Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00040 LG1 1272305 1275008 PREDICTED: L-type lectin-domain containing receptor kinase VIII.2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to bacterium, defense response to oomycetes, protein phosphorylation, defense response to oomycetes, defense response to oomycetes, defense response to bacterium, protein phosphorylation, defense response to oomycetes, defense response to oomycetes, protein phosphorylation, defense response to oomycetes, defense response to bacterium
Cellular Component   is active in   plasma membrane
Cellular Component   located in   chloroplast, plasma membrane
Molecular Function   enables   transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, kinase activity, transmembrane receptor protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity
SNP Position Effect Amino acid change
C/A 1272343 3_prime_UTR_variant
G/C 1272371 3_prime_UTR_variant
G/T 1272644 3_prime_UTR_variant
A/C 1273135 missense_variant p.Asp594Glu
C/T 1273234 synonymous_variant p.Val561Val
C/T 1273671 missense_variant p.Ala416Thr
C/T 1273710 missense_variant p.Glu403Lys
C/A 1273713 stop_gained p.Gly402*
G/A 1274030 missense_variant p.Pro296Leu
G/C 1274031 missense_variant p.Pro296Ala
A/T 1274039 missense_variant p.Leu293Gln
G/T 1274378 missense_variant p.Pro180Gln
C/G 1274383 missense_variant p.Gln178His
T/G 1274386 missense_variant p.Arg177Ser
C/A 1274387 missense_variant p.Arg177Ile
A/T 1274524 synonymous_variant p.Ala131Ala
C/A 1274661 missense_variant p.Ala86Ser
T/A 1274668 synonymous_variant p.Ser83Ser
G/A 1274816 missense_variant p.Ala34Val
T/A 1274893 missense_variant p.Leu8Phe
A/T 1274894 stop_gained p.Leu8*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00040.1
MHSMASSLCNIFLLLCLLKVLASIGPYPVAVHSAGDAPINVTKHFSFYNFSFSNNPRLVHDVKLLGSAKFSDEKGSLQIPDESQYADIRHQAGRGIYSFPIRLLDPTTKTPASFQTTFSFQLNNSTASEQAAYGGSGLTFIIVPDEFTVGRPGPWLGMLNDACENDYKAVAVEFDTRQNPEFGDPNDNHVGINLGTIVSTKVINVSDVGVSLKDGFVHRAWITYDGPQRRMDIRLGRANEEDYPSTPIFSESVDLSPYLNEYMFVGFSASTGNHTQIHNILSWNFTSVSQAFLRFPSSETCQGKILLENSTAAPTTEKSSKNEPPRSFLIFMASVALALALFLGFYFISRHRRNASKIKTSVETEIHLPRPPNKPRRFTFSQLSSSTRSFSEIELLGSDSRGEYYRGKLSNGSQVAVKRFSTQFLHTHGSDKKRLLKEIKVIGHVRHPNLLPVRGWCQDNHEIMVVYDFVPNGSLDKWLFGAGVLPWTRRLKVIKDVADGLSFLHTKHLAHKNLKCSSVFLDVNFRAVLGDFGFVLLGAESKQFESAVCHGADVFEFGVLVLEVIAGRVRDEKEEGNPEERNLLDYAWNLHQIDEKVKLVDRRMGSLINLEQAIRVLEIGLLCTLNENKGRPSMEQVVEFFLNMDKPIPELPRTRPVSLFPYNSANTGLCNTYSCTF*


CDS Sequence:
>Vu_00040.1
ATGCATTCAATGGCTTCTTCCTTATGCAACATCTTCCTCTTACTTTGTTTGCTTAAGGTTCTGGCCTCCATAGGGCCATACCCAGTTGCAGTTCATTCAGCTGGTGATGCTCCGATTAATGTGACAAAGCACTTTTCCTTCTACAATTTCAGCTTCAGCAACAACCCCAGACTAGTCCATGATGTGAAGCTTCTTGGCAGTGCTAAGTTCTCAGATGAAAAGGGTTCTCTTCAAATCCCAGATGAGTCACAATACGCAGACATAAGACACCAAGCTGGTAGAGGGATCTATTCCTTCCCAATTCGCCTGCTAGATCCAACCACCAAGACCCCAGCTTCCTTTCAAACAACTTTCTCTTTTCAACTCAACAATTCCACTGCCTCTGAGCAAGCTGCATATGGGGGTAGTGGCCTCACTTTCATCATTGTCCCTGATGAGTTCACTGTGGGAAGGCCCGGGCCATGGCTTGGCATGCTCAATGATGCTTGTGAAAATGACTACAAGGCAGTGGCCGTGGAGTTTGACACAAGACAGAACCCAGAGTTTGGAGATCCTAATGACAACCATGTTGGCATCAACTTAGGTACCATAGTATCTACCAAAGTTATCAATGTTTCTGACGTTGGTGTTTCCCTTAAGGATGGTTTTGTTCACCGCGCTTGGATCACCTATGATGGTCCTCAGAGGAGAATGGACATTCGTCTTGGAAGAGCCAATGAAGAGGATTATCCTTCCACGCCTATCTTCTCAGAATCTGTGGATCTCTCTCCTTATCTGAATGAGTACATGTTTGTGGGGTTCTCAGCTTCCACTGGTAACCATACACAAATCCACAACATACTCTCTTGGAACTTCACTTCTGTAAGCCAAGCTTTTCTGCGCTTCCCTTCATCTGAAACCTGCCAGGGTAAGATCTTACTTGAGAATAGTACAGCAGCACCAACTACTGAGAAGTCTTCTAAGAATGAGCCACCAAGAAGCTTTTTGATTTTTATGGCATCTGTGGCATTGGCTCTGGCTCTTTTCCTTGGCTTTTACTTCATCAGCAGGCACAGGAGAAATGCTTCCAAGATAAAGACTTCAGTGGAGACAGAGATTCACTTGCCAAGGCCTCCAAACAAACCACGCCGCTTCACATTTTCTCAACTTTCATCTTCAACTCGGTCATTCAGTGAGATAGAGTTGCTTGGCAGTGATTCTAGAGGAGAATACTACAGAGGAAAGCTTTCTAATGGAAGCCAGGTGGCTGTGAAAAGGTTCTCAACTCAGTTTCTCCACACACATGGATCAGACAAGAAGCGTTTGCTGAAGGAAATCAAAGTCATTGGCCATGTTCGCCACCCGAATTTGCTTCCTGTCAGAGGGTGGTGTCAAGACAACCATGAAATCATGGTGGTCTATGACTTTGTTCCCAATGGCAGCCTAGACAAATGGTTATTTGGGGCTGGTGTTCTTCCATGGACTAGGAGATTAAAAGTTATTAAGGATGTAGCTGATGGCTTGAGCTTCCTCCACACTAAGCACCTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTTCTAGATGTCAACTTCAGAGCTGTTTTGGGTGATTTTGGCTTTGTGCTGTTGGGGGCAGAATCAAAACAGTTTGAGTCAGCAGTGTGCCATGGTGCAGACGTGTTTGAGTTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGGGTAAGGGATGAGAAAGAGGAGGGAAATCCAGAAGAGAGGAACCTATTGGATTATGCTTGGAACTTGCATCAGATTGATGAGAAAGTTAAGCTTGTGGACAGAAGGATGGGATCATTGATCAACTTGGAGCAGGCAATTCGTGTTCTCGAAATCGGGTTGCTTTGCACCTTAAATGAGAACAAAGGAAGACCCTCAATGGAGCAAGTGGTGGAGTTTTTTCTGAACATGGATAAGCCTATTCCTGAACTGCCAAGAACTCGCCCTGTTTCCTTGTTCCCCTATAATAGCGCCAACACAGGACTTTGCAATACATATTCTTGCACTTTTTAG


Promoter Sequence:
>Vu_00040::LG1:1275008-1277008(-)
TATATACTATTAAACTTTACAAATAAATAAAAGTAAAATTCTCCAAAAATTCAACAATCATATAAAAGAAAATCAAATTTAAGTTCAAGTTTCTTTTTTTGAGGAAAAAACTCATGTTAATAACTTTTTTTTTCTTTTACATTACACGTTAATAACTTCAGTGAATTAAAGTTAGCTAATGTAATTGATTACCTTTTCTAATATATGTCAAGTGAAAGAAAGCTAATCTTTTTATTGATTATAAAATGATTCTACATTTGGTTAAAAGTTTTTAGTGCGCTGTTATTATATAAATTTTTTTATTAAGAAATAAAAAGTGAAAAAGGAAAAGAAAAATATGAAGAAATCATACTAAATTCTTGCTAAAATTACATTGCATTTATACAGAAAAAAAGAACCATTTATGAAAAATAAACATGATTTCCTACACCAAAATCATTTTATATTTTGAATTTCATATACCATGAAAAAGGAAAATTCCTCCACACATTAAGAAGTTGATCATATTTGGAAAATGACATTTAATTTTTACAAGTTTTTGCTTTGAAGGATTTATTATTAGTCTTCTTTGATTTATTCCAACTAGATTTCTTTTTTAGTTTGAACTGATTCATCATTCTCCTCAATATTAGAATTTATCAAGAGTTGTAAAATGGGTCAAGTAGATTTGTTTAAACCCGACTTGAAAAATGGGTCCGGTTAGGTTGGCCTACCAATTGAAAATGGGTTGAAAGGGTTGTCATCCGGTTGTTTCAAATCTTGGTCGAACTGTATCAAATATTGGTTGAGCTGTATCAGACCTTGGTCAAACTGTACTCGACTTTGGCTGAGTTGTATCAGACCTCAGTCGAACTATCTCAAACTTGGACTTGACTGTTATACTGTGTTAATATAAAATGTCGTAATGCGAGTTTCAATTTCTTTTAATGAAGTTGGACTAGTGTGTTAGGTTAACTAACGCAAGACTTATATGTTGAACGGTTAGACTTGACGAATCAGATTGATTTAGGATTCTGAGTTGGAAATATTATACGAGCCTACTTATTAGACAAGACTAACATACTCATCCGTCAAACTTAATTCTTTTTATCATCTTAGAATTTTCTTTCTCATCCAACATATCAGTCTAAGTTAAAAATTATTTTTAATTACTCCACAAAAATAGTTTCTTTAAATATAAAAATACTATAAAATGTGTTTACTGCGTATATAGGATAATCTCAATATACTTTATCTAGTATTTTCTATAAGATACATTTGCATTATAATAGCTGTTATTTAAATTTGTTTTCTATGCATATCATATGTAACAATAAATATGTTACTTATTGAAATTATTTTAACAGTAATTATACTCTCAGTAAATATATTACTCTTACATGTTACTAATTACAAACATCATGCAGTTTATTTACTCAAAGACACATTTAAAAAAGAAAACGTTAAAAAATATTCTGTATTCTGCAATCAATAAATTATAAATATTGATTATGGACTAAACCAATCAGAAATTGTAAAATAATAAGGAGACGGTGTTCTGCATGTTTATTTGATCCACAATTACATTTCTAAATTATCATTCTGCAGAACACATATCACAGGGAACAATATTCCGTATACACGTGTTCAAACTTGCTTGATCTAACATTTGTATCTAAATTATTATGATTATGTTTTTGATTTGCATATAGGTTACGGAAATGATATGGTTGAGCCAGAAAAGCAAAACTGAGTGGACCAGCAATGTTGAGCAACCAATTCTTCACATCATATATCTCCAATGTCATATCAGACCCCACATACCAGGTTGTGCTGCTTCCGTAATATGAGTGATATTAATCAATCTTTCTTTCATCACCCTTCATCATTTTCCTCTTCAAAATTATTTACATCACATAATTTCAATTACTTAATATCTTTTCAACTTGAGTCCAATTCATAGTCTAATCAGATTTGTTTTTTCTGTTCTGGTTTATTAACCTTTGACACCTAATTCAACT


Gene Sequence:
>Vu_00040(-)
ATCTTTGCTTTATCCGTTGCATTACTACCACAATTATTAGCTCTGCCTCAAACCATATCATCCAGCTGAATTATTGGAACATCCTTTGTTCTATGCATTCAATGGCTTCTTCCTTATGCAACATCTTCCTCTTACTTTGTTTGCTTAAGGTTCTGGCCTCCATAGGGCCATACCCAGTTGCAGTTCATTCAGCTGGTGATGCTCCGATTAATGTGACAAAGCACTTTTCCTTCTACAATTTCAGCTTCAGCAACAACCCCAGACTAGTCCATGATGTGAAGCTTCTTGGCAGTGCTAAGTTCTCAGATGAAAAGGGTTCTCTTCAAATCCCAGATGAGTCACAATACGCAGACATAAGACACCAAGCTGGTAGAGGGATCTATTCCTTCCCAATTCGCCTGCTAGATCCAACCACCAAGACCCCAGCTTCCTTTCAAACAACTTTCTCTTTTCAACTCAACAATTCCACTGCCTCTGAGCAAGCTGCATATGGGGGTAGTGGCCTCACTTTCATCATTGTCCCTGATGAGTTCACTGTGGGAAGGCCCGGGCCATGGCTTGGCATGCTCAATGATGCTTGTGAAAATGACTACAAGGCAGTGGCCGTGGAGTTTGACACAAGACAGAACCCAGAGTTTGGAGATCCTAATGACAACCATGTTGGCATCAACTTAGGTACCATAGTATCTACCAAAGTTATCAATGTTTCTGACGTTGGTGTTTCCCTTAAGGATGGTTTTGTTCACCGCGCTTGGATCACCTATGATGGTCCTCAGAGGAGAATGGACATTCGTCTTGGAAGAGCCAATGAAGAGGATTATCCTTCCACGCCTATCTTCTCAGAATCTGTGGATCTCTCTCCTTATCTGAATGAGTACATGTTTGTGGGGTTCTCAGCTTCCACTGGTAACCATACACAAATCCACAACATACTCTCTTGGAACTTCACTTCTGTAAGCCAAGCTTTTCTGCGCTTCCCTTCATCTGAAACCTGCCAGGGTAAGATCTTACTTGAGAATAGTACAGCAGCACCAACTACTGAGAAGTCTTCTAAGAATGAGCCACCAAGAAGCTTTTTGATTTTTATGGCATCTGTGGCATTGGCTCTGGCTCTTTTCCTTGGCTTTTACTTCATCAGCAGGCACAGGAGAAATGCTTCCAAGATAAAGACTTCAGTGGAGACAGAGATTCACTTGCCAAGGCCTCCAAACAAACCACGCCGCTTCACATTTTCTCAACTTTCATCTTCAACTCGGTCATTCAGTGAGATAGAGTTGCTTGGCAGTGATTCTAGAGGAGAATACTACAGAGGAAAGCTTTCTAATGGAAGCCAGGTGGCTGTGAAAAGGTTCTCAACTCAGTTTCTCCACACACATGGATCAGACAAGAAGCGTTTGCTGAAGGAAATCAAAGTCATTGGCCATGTTCGCCACCCGAATTTGCTTCCTGTCAGAGGGTGGTGTCAAGACAACCATGAAATCATGGTGGTCTATGACTTTGTTCCCAATGGCAGCCTAGACAAATGGTTATTTGGGGCTGGTGTTCTTCCATGGACTAGGAGATTAAAAGTTATTAAGGATGTAGCTGATGGCTTGAGCTTCCTCCACACTAAGCACCTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTTCTAGATGTCAACTTCAGAGCTGTTTTGGGTGATTTTGGCTTTGTGCTGTTGGGGGCAGAATCAAAACAGTTTGAGTCAGCAGTGTGCCATGGTGCAGACGTGTTTGAGTTTGGTGTCCTTGTGTTGGAAGTGATAGCTGGAAGGGTAAGGGATGAGAAAGAGGAGGGAAATCCAGAAGAGAGGAACCTATTGGATTATGCTTGGAACTTGCATCAGATTGATGAGAAAGTTAAGCTTGTGGACAGAAGGATGGGATCATTGATCAACTTGGAGCAGGCAATTCGTGTTCTCGAAATCGGGTTGCTTTGCACCTTAAATGAGAACAAAGGAAGACCCTCAATGGAGCAAGTGGTGGAGTTTTTTCTGAACATGGATAAGCCTATTCCTGAACTGCCAAGAACTCGCCCTGTTTCCTTGTTCCCCTATAATAGCGCCAACACAGGACTTTGCAATACATATTCTTGCACTTTTTAGGCAAGTCATGATCTTGGTGAATGATTATGTGGGAGATGTAAGAATAAATGTTGAAGGGACCATTCTTAAGCCTGCAACAATGGATTGGATTGATTTTCCAAATGCTGCAAGTGCTTAAAGTTTGTGTGTTTGTGACATGCTACATAAATAGTGTTGTATTTAGCCTGTGGTATTCAATTTCAGCCTGCTTTGGCATTTCTCTACAAGATTCAAAGCTCGAGGTTAGGAGGATTTGTGCCTCCGTTTAGAGTCCATCTAGCTACATGGCAAGTGAAAGATGGTTGATAATGGTAAAAAGGGAAAACATAATCAATACTATTTTTATGAAGAAATGTTAAATTGTATGAATCAAAGCTCAAGTGTACTTTGTTTTACCCCGACCAGTTCTTTAGCCCCAAGGCCATTACTCTGATTATTTTGTTTTTGGTTTGTGCATGAAATTATGATTGGGCTAATGTGTTTTTATGTCAAGGTAACACTGAAAAAGGCAGTGAGAATTCTTCTTCTTAGCCTTTTAGTGATGTCTGTCTATCATTTTTGTACAAATTACTAGCAATAAAGGGCCTAATATTCAAATC