Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00076 LG1 2173079 2176885 PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, response to abscisic acid, response to abscisic acid, response to cold, response to hydrogen peroxide, response to salt stress, response to cold, response to hydrogen peroxide, protein phosphorylation, response to salt stress
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   calmodulin-dependent protein kinase activity, calmodulin-dependent protein kinase activity, calmodulin binding, protein serine/threonine kinase activity, protein serine/threonine kinase activity, calmodulin-dependent protein kinase activity, protein serine/threonine kinase activity
SNP Position Effect Amino acid change
G/C 2173089 3_prime_UTR_variant
A/G 2173712 downstream_gene_variant
T/C 2173777 downstream_gene_variant
A/T 2173794 downstream_gene_variant
C/T 2173798 downstream_gene_variant
A/T 2173963 downstream_gene_variant
A/C 2173995 downstream_gene_variant
A/G 2174351 downstream_gene_variant
G/A 2174456 downstream_gene_variant
A/G 2174524 downstream_gene_variant
A/T 2174527 downstream_gene_variant
T/A 2174825 downstream_gene_variant
C/T 2174957 downstream_gene_variant
C/A 2175133 stop_gained p.Gly334*
C/T 2175495 downstream_gene_variant
C/A 2175590 missense_variant p.Gly233Val
C/T 2175616 splice_region_variant&synonymous_variant p.Gly224Gly
G/C 2175707 downstream_gene_variant
A/T 2176017 downstream_gene_variant
C/T 2176018 downstream_gene_variant
G/A 2176020 downstream_gene_variant
A/T 2176472 downstream_gene_variant
A/T 2176553 missense_variant p.Asp73Glu
C/T 2176684 missense_variant p.Glu30Lys
T/G 2176788 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00076.1
MKKTASPKFQQSSQRKQNHNHQVLATVNDEERHNPKTGSALKSFKNAVKKCAQIFSLFLLGKRKSASYVVGNDDRKNTSKVRGVASSSTDLSSESNTKNSSKWKFSYSYASSSTASGQLGIGNFSFEEIYKSTAKFSPDNEIGQGGFGTVYRGKLNDGSMVAVKRAKKEVIHSHLHEFKNEIYTLSQIEHRNLVRLYGYLEHGNEKIIVVEYVGNGNLREHLDGIRGEGLEMGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILVTENLKAKVADFGFARLSDDPTATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMVTGRHPIEPKRPLDERVTIRWAMKMLKQGDAVFTMDPRLRRNPASIKAVKQVLKLAFQCVAPLKQSRPPMKNCAEVLWEIRKSFRDETNSDHPSLPSHHSADFPQREKNKHTVFGIEDDDSYKFVSVPNHIHS*


CDS Sequence:
>Vu_00076.1
ATGAAGAAAACAGCATCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATCATAATCACCAAGTTCTTGCTACAGTCAATGATGAAGAGAGGCACAATCCTAAGACCGGTTCTGCACTCAAGTCTTTCAAGAATGCTGTGAAGAAATGTGCACAGATTTTTTCATTGTTTCTCCTTGGCAAAAGAAAATCAGCCTCTTATGTTGTTGGAAATGATGACAGAAAAAATACATCTAAAGTCAGAGGGGTGGCATCATCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCCTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAATGAAATTGGACAAGGTGGTTTCGGAACTGTCTACAGGGGAAAACTAAATGATGGATCTATGGTTGCCGTAAAGCGTGCCAAGAAGGAAGTAATACACAGTCACTTACACGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACACCTTGATGGGATTCGGGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAGTCACTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGATCCTGAGTATCTCAGAACATATCAACTCACTGAAAAAAGTGATGTTTATTCCTTTGGTGTTTTGCTTGTTGAAATGGTGACAGGAAGACATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTACCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTCCAATGCGTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACCAATTCTGATCATCCTTCTCTTCCTTCACACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAGCATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCATTCATAA


Promoter Sequence:
>Vu_00076::LG1:2176885-2178885(-)
AATATAAACAACTCCAGCATATAAAGAAGGAGTATTCTAAAATTATTTTGAAGATTCTTGAATGGAATAGAAGATAAATGCAATGAATTAGTGACCAAAGGTTTGATGTGCAAGTTTGACTTCCACAGCATATACAACTCATACTGACCCACACATTTATATCGATTGAGTCTATAACATATTCTATATATTTATTTTTTATTTATTTATCTTTCAAGATAATAGGGATTGAAAAATTTACTTAAATTTATAATAAATCAATTTTATTAGAAGGGGGTAAAGTGTACTTATAAATTGAGTCCAATTAACTATGTTTTAAGTATATTCATTATTTAAATCATAATAAAAAGCTTATGAATAATAATTTGAAAAATTATATTTGGATACATCTCAACCTTTTCTATTTCTATTCAAAATTTAGTGAAAATTTATTTCTTTTTACATTTTTTATTTAACTTTTATATTCTGTAAAAATAAAAATATAGTTTTATTGGTATTGTGTAAGTGTAAAGTAAAAGGTTATTATCTTAATATTTTTTGCTAAAATTTATGATTGATATATTAATATTTTTAATAAAATATTTCCTATTTTGATTATTTATTCAGCTTCAAGCATTATTCATTGAGTATTTATGTTAGCATCGGTGAATAAAGATAATACTGAAAAGATGATGAATACTTTTCAATTTTATAAAGGAATACAAGTAAATTTACATATTTAAGGAGAAAACAAACATTATTTGATTTTAATTTTTAGTAAATAATTATTAAATACTGTTAAGTATTGTTTAAAATAATTACTATAAAAATTCTTTAATATTATTTAGATCATATGTGATAATTTATAATCAGTTAGTATAATGTAACTCAGTACCTAGCAAGAAAAAATAGGTATGCATTGACATTATAAGGTAGGGTTTAGGATTTACAATTTACTTATCTAAAAAACTACAAAAAAAAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATAAACAAATTTTAAAATAAAAAATTAAAAACAAAGAGTAACCTAACTTTTTTGGAAATTTATTGCAGAGAAAAATTGAACATGTAAAATACAGAGGTGCCACAAGAAAAAATGCACTGAAGAATGAAAATTCACTTTTTAACTAAAATAGTATGCTACAAAAAGGTGAATTTAGAGTACAAAGTAAGGTTGAATATATAAATTTTAAGTCAAACACGGTTAAGTTTAATATTTCAATGATATCTTCTTATTGATTTATGAAATGATTTTTTTTTATTCTTATGACATGTAATCTTACATTACAAGAGTTATTATACAATATCTTAATTAATATATATCTGTACAATTTTACTTCCATAAAATGATTTTATATAAACACGCACTTTAACTAATATTTGATTTGTTTACCAATGTTCTTAAGAAAAATAAAAAACTATTGTACTTTAAAAAAAAAAACCCAATCCATCAAATGAAAATAATTTCTTATCTGAAAAATGAAAAAAATAGAAACAGTTGGAAAAGTAAAGACTGACGTGGATGAACACCATTGGCCAAAATTGGACGTTGGATCTGAGGCCGGCCATGATGTTATGTTACAAAATGTCACTCACCTAGCAATTGACCTGGTATCACACAAAAACAAAACCGTTGACCTAGTTTTTTCCTAATAAATCATCAAATTCATCGTTTAATTTTCAAACTGTAAAATGTCACTCATTTCTCTCTCTATAAATAAGCTTGTTCAAAGAGATATTAAAATGAAAGTAATTTTAATTTTTTAACTTTATTTGACAATATTTTCCATTTAAAAAAGTAAAATGTGACTTAGTTTATCATGATTATTATTTTGAGGTAATTGTTTGATCGTGTTTGATGATTGGTAGAATATTTATGACTTTGACTTTCAAAATGTTAACTTGTAAAGGCAAACCTACTTGTGTTGATTGGACTGATACAAAACGTGAATGAAGAAATGGTCTGAGAC


Gene Sequence:
>Vu_00076(-)
AAATAAATTATGAGGCAAGAAAGTAACAGATGAGCAGAATGAATATCAGACCTTCTTCTTTATATTTTTGACACAAGAAATGATCTGGTCTTTGAATAGCTCTGCCATCTCTAAATGAAGAAAACAGCATCTCCCAAATTTCAGCAATCTAGCCAAAGGAAACAGAATCATAATCACCAAGTTCTTGCTACAGTCAATGATGAAGAGAGGCACAATCCTAAGACCGGTTCTGCACTCAAGTCTTTCAAGAATGCTGTGAAGAAATGTGCACAGATTTTTTCATTGTTTCTCCTTGGCAAAAGAAAATCAGCCTCTTATGTTGTTGGAAATGATGACAGAAAAAATACATCTAAAGTCAGAGGGGTGGCATCATGTAAGTATGATGATGAAAATAGAAAAATGTTTTGGTTTTTTGGTGATCTGAAATGATTTTGTTGTTCTTGCTCAAGATCAACCCTTTATATTAACTGGGGTTCTGATGGCAAATGCCAAGTCACTTCTGCATGATGCTTTTGTAGAATTCTTCTGAGTGAGATTTTCTTAAACTGAGATGTGCCAATTTGCAGCATCAACTGATTTATCTTCGGAGAGTAACACCAAGAATTCATCAAAATGGAAGTTTTCTTATTCCTACGCCTCATCTAGCACTGCAAGTGGACAACTTGGAATTGGCAACTTCTCCTTTGAAGAAATTTACAAGTCAACTGCAAAATTCTCACCAGATAATGAAATTGGACAAGGTGGTTTCGGAACTGTCTACAGGGGAAAACTAAATGATGGATCTATGGTTGCCGTAAAGCGTGCCAAGAAGGTAAATTAATGTTCATATTTGACTGTTTCCCATCTCAAAATTGGCTCAATTGTGCTGTAGATGATGAAAGTGAAACATGTCCATCAGATTGCTGTCTTTCACAAATTCTGTTATGTGATATGAGCCTAATGTAGTGAATTCCTTGCAGGAAGTAATACACAGTCACTTACACGAGTTCAAGAATGAAATATACACCTTGTCTCAAATTGAGCATCGGAATCTGGTGAGGTTGTATGGATATTTGGAACATGGAAATGAGAAGATCATTGTTGTTGAATATGTTGGTAATGGTAACCTTCGAGAACACCTTGATGGTAAGTCCTGTGTATCCAGCCATCTACCAAAGTAGGCTCATGCAGTCTATATACTGTTCATTATTCAATAAAGCAATACTCTGATGCAGTTCCTTAATTATACAACACAGTGGTGACTAAAAAAGCAGTAAATTATATTGCAGGGATTCGGGGAGAAGGATTAGAAATGGGGGAGCGTCTAGACATAGCAATTGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGGTGTGTTCATAGAACTAAATTAGAAAGGAACAGATCTGTTACAACATATTTGAATTCTGTATAACTGTGATGTATCTAATTGAACTCTCAGGGAAGGGTATTTGCAATGTCTGCTAAAGTAACCTTACTGTGTCTTGTATTGTTTTTAATATCAGATAATCCAATTATCCATAGAGACATCAAAGCATCAAACATCTTAGTCACTGAGAACCTAAAGGCCAAAGTGGCAGATTTTGGTTTTGCACGGTTATCTGATGATCCTACAGCAACTCATATTTCAACTCAAGTAAAAGGAACAGCTGGTTACATGGATCCTGAGTATCTCAGAACATATCAACTCACTGAAAAAAGTGATGTTTATTCCTTTGGTGTTTTGCTTGTTGAAATGGTGACAGGAAGACATCCAATTGAACCAAAGAGACCCCTTGATGAAAGAGTGACAATCAGATGGGTAAGTGTATCAGTTCTTCAAAATTTCAACTTAAAGAGTAAATTACCACATTACTTTGGAGTAAGCAGTAACTGTTTAAACTACTTATGAAAGTCAAACAAAACTTCAATCAACATTCTGCAAGCAAGAAGTGAACTTTTGACTGGCAACACCCTCAATTTAAAAGGGTGCATGATAGATACACATTATTTAGTTAGGTTAGTGGGTTGAAGGAACAAGACATTTTGCCCAAATAATAAATAAGAGAAAGGAGGTATCTTGTGGCTTGAGAGAGAATTGATGCTTTGGGGAATAGGAGGTATCTTATCTAGAGAGAAATACCTAATTCTCTTTATGATAAATGCTACTAGCATCACATTATTTGGTTGAAAACTAAGTTTCAGCAAACTTTAGTCAAATAGAAGTTTGCTTTGTCTTTCTAATTAGATACCATCTGTCGGTGTATATGTGAGAAAAAATAGGAGATGCTAACTCATTGTTATTAGTTACCTTGAAGATTAAATTATCATCTATAATAATTAATAAAAACATAAACTTTTATAAGTGCTTTTTTTTTACATAAGGCAATTTTATACTTAACATTATGCTAACTGTTGTTCTTTTTAAGTTAATTTTTTTATCGTAAAACTTATGCACACGTAAGTGCAATGGTCCCTTTCCTTCTTTTTCTGGCCTAGTCCAGCTGTGAAGACTTCTTATATTTGAAGTGCACAGTGAATAAATTCTATGGTCATAGAAAAATAAATCTACTTGCTAGCAAAGGAAGTCAATTTCAGTTTCTCTGTTCATAGAATGTGTATGGAGGATGTGATATATAAGCATTTTTTGTTTAATCGAGTGATGAAGTTAGATCCTTAGTCTTCCATGCTAAACAGGGTCAGCTTTGGTCATGTTTCCGATTGATTCACTAATTTTTGTGAGATAATTAGTTATGCAGATTACCATGTTATCTGTTGGAGATCCCATGTTGATTAAGATGAATTTACATAATATAAGATGCTACAAACTTCATCTTACTAGTCAGTTTTGTAGGTTGAACTAGATTTAAAGTTTGTTTCTTAAAATAATATCAGAGTCATCCTAATACTATCCTAGTGAATAGTTTTTTTCAATTAAACCTATTGTATCATCTACTATTGATCTATTATTATTAATGTTTAGTCCCATATAAAAAACTATCCTAGTGAAAGTTTTTGTTTGTTGGACCTATCGTACCATTTAGTGTCGGTTCCCTATTAATTTTTAGTCTTATGCTTAAAATATATGTCTCGATGTGAAGGAATGTGTTAGAGATCTCACATTAACTAAAGATAAGACAAATTTAATATATAAATAGATACAAACCTCACCTTACCAAGTTTGATTAGAGATATGGTCAAATTATCTTATAACTAAATCATAATATTTTACATCACCTAAAAATATGAACAGACTACTTTACAAGTTTGATTTTTGTGACACTGAATTAAGCTTAGAATCTAAGTCTGAATATAATGTCAAAGTCTAATATGTAATTAAAGGAACATAATTTGCATGGATGCAGGCAATGAAGATGCTGAAACAAGGGGATGCTGTATTTACCATGGACCCTAGGCTGAGAAGAAATCCAGCCTCCATCAAGGCAGTAAAACAGGTTCTCAAGCTAGCTTTCCAATGCGTTGCTCCTTTGAAACAATCACGGCCACCTATGAAGAACTGTGCAGAGGTTCTGTGGGAAATCCGCAAAAGTTTTAGAGATGAAACCAATTCTGATCATCCTTCTCTTCCTTCACACCATTCTGCAGATTTTCCTCAAAGGGAAAAGAATAAGCATACAGTGTTTGGCATTGAAGATGATGACAGCTATAAATTTGTCTCTGTACCTAATCATATTCATTCATAAAATTTTGTTCATTGTTTGTTCAGAGTTGTCAACATCTTGTCAGTTTCGTTTATTCCTGATTGGCCTCAATATAATTGTAATTTCGGTGCTCATGTGATATAGATTCTATTCATATT