Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_00095	LG1	2436728	2441528	PREDICTED: myb-related protein A-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of cell division, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/A	2436751	synonymous_variant	p.Leu8Leu
G/A	2436770	missense_variant	p.Val15Ile
G/T	2436779	stop_gained	p.Gly18*
G/A	2436802	synonymous_variant	p.Thr25Thr
G/A	2436814	stop_gained	p.Trp29*
G/A	2436836	missense_variant	p.Gly37Arg
A/G	2436853	synonymous_variant	p.Ala42Ala
T/C	2436879	missense_variant	p.Val51Ala
G/A	2437034	downstream_gene_variant
T/C	2437116	downstream_gene_variant
A/G	2437155	downstream_gene_variant
G/C	2437287	downstream_gene_variant
G/T	2437385	downstream_gene_variant
C/T	2437408	downstream_gene_variant
G/A	2437497	downstream_gene_variant
A/T	2437504	downstream_gene_variant
A/T	2437528	downstream_gene_variant
C/T	2437768	downstream_gene_variant
T/G	2437867	downstream_gene_variant
C/T	2438008	missense_variant	p.Leu75Phe
G/T	2438065	stop_gained	p.Gly94*
C/A	2438114	missense_variant	p.Ser110Tyr
A/T	2438132	stop_lost	p.Ter116Leuext*?
A/T	2438133	stop_lost	p.Ter116Tyrext*?
A/C	2438227	downstream_gene_variant
T/G	2438464	downstream_gene_variant
A/T	2438474	downstream_gene_variant
A/G	2438498	downstream_gene_variant
T/A	2438622	downstream_gene_variant
T/A	2438737	downstream_gene_variant
A/C	2438785	downstream_gene_variant
T/A	2439130	downstream_gene_variant
G/C	2439135	downstream_gene_variant
C/A	2439324	downstream_gene_variant
T/C	2439335	downstream_gene_variant
T/A	2439387	downstream_gene_variant
T/A	2439388	downstream_gene_variant
A/T	2439411	downstream_gene_variant
A/C	2439613	downstream_gene_variant
T/C	2439722	downstream_gene_variant
T/C	2439763	downstream_gene_variant
G/A	2439786	downstream_gene_variant
T/A	2439790	downstream_gene_variant
T/C	2439794	downstream_gene_variant
T/C	2439833	downstream_gene_variant
T/A	2439835	downstream_gene_variant
T/A	2439869	downstream_gene_variant
T/G	2439898	downstream_gene_variant
A/T	2440009	downstream_gene_variant
A/T	2440218	downstream_gene_variant
C/A	2440280	downstream_gene_variant
A/G	2440315	downstream_gene_variant
C/A	2440436	downstream_gene_variant
C/G	2440484	downstream_gene_variant
A/G	2440780	downstream_gene_variant
C/G	2440906	missense_variant	p.Thr202Arg
G/C	2441317	missense_variant	p.Ser339Thr
C/T	2441343	missense_variant	p.Pro348Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_00095.1

MMLWKLYLGARGECVAYGDGGDFDTWIEWYYVGVEPGLCYRAVLGDLRDHVGDGEEERRVSVEEAPDTDQFLCGHFLHHQQQQQTKNNDACGFSEEAFKWTNINQNLTLCLDDMQCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQHGDKKWSEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDMHTRLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKTSNGKPHSSILEDYIRSKTIITTNSTPLTAPTPSQDNNAHNPFNHLFYQPFPNEPLFMQQIFTENVEASKQSKMMSPTSYLDHWNMMNVDDVDESEVVYSLQYPDNMHFNDSFFPRETHPPATYLPSDFYVSPLFNVASGYGNQNLNMDFRHQGASQVKGEEIW*

CDS Sequence:
>Vu_00095.1

Promoter Sequence:
>Vu_00095::LG1:2434728-2436728(+)

AATTTTTAAAAAATAAGGATTATAGTTAATTTTAATTTAATGTCGCAAAAGAAATTAACACATTATACTAAAAGGGTTATATTTCTTTTTTATTTTTTAAATTTAAAGACTAAAATATATAAAAATTTAAGAGAAAAAGATATTTTAATTTTATATATAAGTTCATAACTAAAAATACATTTAACCTATTGTTTCTCTTAATATTTAAATCCCCAAACACGTCTTTATTTCAAGTTTGCAGATCTTGTTTCAGATTTTTTTAGCTTTTCTTTTTATGGTGAACATACTACTTCCTTTGGTCTCATACTTCTCCCAAATCATCTTAACGTATTCCTTAAACTCTCTGTTAGAAGCATCTCAAGCGTCTAAAGATCGAATGGCTTTGGGTCCCAATCTATTTTGGAATTTTTACCAACAATTGCACAATGAAAGTGGTATATGTTTTTTTTAAAGGTTAAACCCCTTTAATTGTCCTTATTTATGTAGGTTTTTTTCAGTTTAATCTCCGTTTTTTTAAAATCCCCAGTTGAGTCCTAAATAGTGTTGATTTGAATCAATTGAGCCCCTGCCGTTAATTTGGCTTAACGAGGTTAAGTTTTTGATGAGGTGTGAGGTTGACATGTCAATTTTTTTAAACTTGGCATGGTGAGCGTTGAAACGTGGCATGCTGATACCTTTATTAGTGGAATTTGGTAAAATGTTATAATTTAATATTAGGGAATTAGGGATTCTGAAATGAAATGGGATTTAGGGTTCATTCAAATTGAAATTGAAATTCACACTCCTTCTTGTTCCTTCTTCCTTGTCGAACATCTCGTACACGAAAACCTTATGCACACCGTCCTTCAGCTACGGCGTTCCCATCCGAGACTTCAGGTGTTGCACCAAGCCCTTCAGGTAAATCCAGGCGTAGCCGAGATTAGCGTCGAACTCGTTCCCGACGACGCTAAAGCTAGGCCAGCCAGTTTCGATCACGACGAGTGGGATGGTCTTGTAGCTGGCAACAGCGAGGGCGGTAACAACGGCGTCGACCATGACATTGAAGAGGTTGCGGTAGAGGACGCAATGGTGAAGTTGTCGCGGAAGTTGAAAGGGTATTCTTGGAAGAGCGCAATGCTGAGGGGGATCTCAGGGTTCAAACGATAGAGGTTGTAAGGGTAGAGGTTGATCAAGAAGCAGGAATATGTATCCTGCAAGAATTGGAGGAGCATACTGAAGAGTGTGATCCCCGAGGGTTCTTGAAACTATGCGTTTGAGGGCTGGAACGGGGATGATAAGGCGGAGTAGAGCTTTGAGATGGTGGTGATTTTGACAAGGTTGTGCTAGAAGAAATGAACATTTTCTTTTCTTGGACGTGGGGACACAATTCAATTTCTAGGAATATGTATCCTGCAAGAATTGGAGGAGCATATCGAAGAGTGTGATCCTCGGGGGTTCTTGAAACTATGCGTTTAAGGGCTGGAACGGGGATGATAAGGCGGAGTAGAGCTCTGAGATGGTGGTGATTTTGACAAGGTTGTGCTAGAAGAAATGAACATTTTCTTTTCTTGGACGTGGGGACACCATTCAATTTCATAGAAATGTTCAGTTGCCACTATCTTGTTCATTTTGTTTAACAGTTAAATATTTTATTGTTTAGGATGTAGTGAGTTATTGAATGATAAAGAGAATCGACATTTTGTGTTTAAGGAACCTTTGAGTACATGCTCAGAACTTCTGAACAAAAATACCTTTATCATAGAAAATAGAGGGGCTATCGAATTTCATCCTGGAGAAATGCTTACTTCCTAAAAAATAAAGTTACAACTTTTCCTAATTAATGAAGGAACTCGTCCTAGTCTATATGCAGCAGGTCTTGATGTTTAGATTATTTTTCTTTTGATGGGCGTAATCCTTATTTTCTTTTTAGGTCAAAAGGAAACATCTTCAATATTAAAACACCTTGGAAAGAAGTGGGGAAGTTCAAGTATAGTCGAAGGGGAGCTTATACTTTTCCCATA

Gene Sequence:

>Vu_00095(+)

ATGATGTTATGGAAACTCTATCTGGGTGCACGTGGGGAATGCGTTGCCTACGGAGATGGTGGTGATTTTGACACGTGGATAGAATGGTACTACGTGGGTGTAGAGCCAGGACTCTGCTACAGAGCAGTTTTGGGCGATTTGAGAGACCATGTTGGGGATGGTGAGGAAGAGCGTCGTGTTAGTGTAGAGGAGGCTCCGGGTTATGGATGGGTCCGCATTTTCCAACTAAAAAGTTTAACCTCGTTAAACTAAATTAACGGTAGGGACTCAATTGATTTAAATTAGCAATGTTTAGGACTCAATTGGGATTTTAAGAAAACAGGAATCAAACTGCAAAAAAAACCTACATAAAAAGGGCAACTAAAGGGGTTTTGCTTTTTTGAATTAATTATAATATTTTTATTTGGATAGAAAATGAAATTATGATAACAATAATCTGAGTAATGTTTACAAATAAATTCCATTCGATACCCACCCTAAGAAAAATATAAGGAAAGTGTAAAATAAATATAATTGGGTTTTAAAGACTTTGTTTGAAGTGATAAAAAAAAATATTATTGGATGCATAAAAATAGACTCTTTATATTTTTTATATGATTTTTAATAATATAACCCTTTTCAGTGACCTTAGAACTACCATAAGAGAATTGTGATCGAGAAAGAAAGAAGAAGAAAAAAAGCAGACTTTTCCTAATTTATTTCTTCCTAAATACTTGTATTTATCCAGAATCCATAATATGCCACATTAAAAGATTTTAAAACCAGAAAAGAAATTTAAATATTTATACAATAAATGACCCATAATTGAAAATTAACTGAAAATTATGTAAATGCAATTAACTAGTATATTAAAATTGTATTAAGTAACAATTAAATATGAGTTAAATCTAATAAATTAAAAATAAACATCATGGACTAACAGCACCCACTAATCCCTCTGCCCACACTTTTAATTAGTCCATAATGAATTTTAGGAGTTACACTATAAAAATTCAATCCTGACCTTTGCATAAAGGCACACAATTAATGGCTATTATAATCCACTTGCTTATTACAGTGTTTGGCTTAAGCTTCAGCATTTGTCAACCCTAATTTCACCTAACAGAAAACCCTATACCTGCCCACAATAAACAATACTTTCCCTTTTGATTTATTCTCCTGTTCATGGATATTGTATTAAGAGGAGAAAGTCATGGTGAAAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCATGCTTTGACATCCACAGACACAGATCAATTCCTATGTGGCCACTTCCTTCATCATCAACAACAACAACAGACAAAGAACAATGATGCATGTGGTTTTTCGGAGGAGGCTTTTAAGTGGACAAACATCAACCAAAACCTTACACTGTGTCTGGATGATATGCAATGTAAGAACACAAAAGTGGTGGGAAGGAGAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAGTGGAATAAGGAAGAGGACAGGTTGAAAAAATTAAGACAAGGCTGTGTTTTTCAAATGTTTTTTAGTCTGATAAATTGTTGTGAATATAAATTTGTGCTGAGCATTGAAGCTTATTTGGTATAACTGCAGGAAACTGATAAGGTTGGTGAAACAACATGGTGATAAAAAGTGGTCTGAAATAGCTGAGAAGTTGGAGGGAAGAGTTGGCAAACAATGTCGAGAAAGATGGAACAATCATTTGCGTCCTGATATTAAGGTTTGTTACTTCAACACTTAACAGTTACATTACATCCTAAGATTAGTTGAATTAGAATAAATCTTGTTCACCCTAACACAATAAGGTTGGTGAATCTGAATTTGAATATAGTTTTTTATGTTTTTTTTTCTTTTTTTCTGTACTTGACTCTTAGTTTATGCTGTTTTCTTGGGTGAATGAATCTTAACACTGCTATTTATCAGTATCTACACTCATTCTCTTCATCTTGAGAAGTATGGTTTAGGATTTTTTTGGTTATGTTTTTGAAACTTCAAAAGTGGATTCAATTGTAAAATGAGAATAGGTTCAAAACTAGTTCAAGGACAGTATCATTTTAACTAAATATTGATATTATGTTTCTTTTATAGTTATGATATTATAATTTGTTAGCTTTATTATAATTTTAGATTTAAACTAGTATCTTTGAGAGATTAATAACAAGATTAAAACGCTGATATTTTGACATTTTTTATTTCTAACTCTAATTCTCTTGAATGAGTTATATCCTTCAAATAAGGATGGTCAATGTTTCTTTTGGAATTTTAAAATGTTGTCAGGAGATGATATTCTCCTCAGTGGGAATCAGTTTTTAAGATATTGTCTAATACACAACCAAAATGTTGATCTACATTTAGATAAAAGAAAAGAAAGAAAATATGTTATAGAAGATATATAATATAAGAAAACAAAGATAAAAAATAATGTTCTTAATAGACTTTTATTAAGAATGTGTTTATGTATATATCACTACTCACAAAACATCTTTCAAGATGTGAACAAATCTTAATACCTCCATCTATCAAGATGTGCACTATTCACATCAGATTTGGTGCATCAATATAATCATACAAAAGAGATTCATTTTTTTTTCTTATAATGGTTTTTCATGTTAATTTGTAGAGAATATTTTTATCATATACTAAAATTGATCTCTTTTACAAATAAGTATCTTAAAAAATTTTAATTTTTTTTCAATTGATTTTCAAACTTCGTCTCATTTATAAATAAGAATCTTTGAATTTGAATTGTATTCAAATTATTTCTTAGATTTTATCATTTCTAGGGAACATCTAAAATTTTAATTTTGTTCTAATTAATCCTTAGAAGAAGTTATCAAACTTCTATAAATAGCTTCTTCTTTTTTTGTAACTTTAAGTTAAATTATATACATCACATAATCCTTCAGACTTGTGACATTTTTAATTGATTATGTAATTGTAAAATAAACAACAAATTTTGGAATTTTATTTTAATTAAACCTTAATTTATCATGTCTTATAAACAATTTTCTGGAAAAGATTATTTAAAATGAGAAATAGTATAAACAATTGTGTTATTAATACATTTATTTGTTTGAATACGGTTGATGCTTCTATTAATTTATTTAAAATTTTGAATTTGAATACTGTTGATACTTCTATTAATATATTCACAATTTTGAATTTGAATACTGTTGATACTTCTATTAATATATTCACAATTTTGAATTTGAATGCTGTTGATACTTCTATTAATTTAGGATGTATAGATTCTAAATCTTATGATTCAAACTTGTAAAATTAATCTTTTCAAGATAACATTGTAAATATAATCAAATAAAATCAAAATAAAATATTTTTACAAAATCAATTAAAAATGATAATAAATTTAAAAATTGGTGTAAAATTAAAATAGATCTTTAAATATTTTTTTCTTTATTTATAAATTTTTATTTTATATTTAAATTTATAAAAAATGAAGTATAGCAAGCCAAAGAAGAAAAATAAAAAATTAATGGTATTTGATGTAAATATTTTGCTTATACTTATTAAAAAAATAAAAAAGAACACTATTTGTAAAAGTTGGATAAGTTTTAAAGATTAGTTATAATCAAATTAAAAGTTTAGGTATTTATTTAAAAGAAAACAATTGATTTCAAGGATCAATTGAAACAAAATTGAAGTTCAAGCTATCTATTAGTAAATGTGATGGATTTTGAATATCAATCAAAATAAATCAAGATTAAAGTACCTATTTATAAAAGGGATAAACTGTAGGGAGATTACTAATTTTTTTTACCTTTTAATTTGAATTTCAAAATTGTATTATTTTAATGTCACACAAGTTTGCAATATAATATATAATCTATTTAGAACATTATATAAGTTTTAGCAGATAAATTTTTTAGAATTTATAGATCATAATTATTTAAATTTATAATAAATTATAAATTATATAAGAATTTTAATTTAAAATTCACTTTATATAGCCATAAGTTATAATATTATTATCTATATGTTTATATATAGTTAGTTTGTAAATTATTTACTTGTAAACTATATAATTTAATATTATTATATACTTATAAACAATAGATTATGTTTGAAAAAAATAGTTATATTTTTTGGAAAAAAAAATGATCAGAAAGATAGCTGGAGCGAAGAAGAAGAAAGAATACTGGTAGACATGCATACGAGGCTTGGAAATCGTTGGTGCGAGATGGCGAAATGCCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCGACGAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAGACCTCTAATGGAAAACCTCATTCCTCCATACTCGAAGACTACATCAGAAGCAAGACCATCATCACCACAAACTCTACACCTCTTACTGCCCCAACACCCTCACAGGACAACAATGCACACAACCCTTTCAACCATCTCTTCTATCAACCTTTTCCTAACGAACCACTCTTCATGCAACAAATTTTCACGGAGAATGTCGAAGCCTCTAAGCAGTCTAAGATGATGTCTCCAACCTCATATTTGGATCACTGGAACATGATGAATGTTGATGATGTTGATGAGAGTGAGGTTGTGTATTCTCTGCAATACCCAGATAATATGCACTTCAATGATAGTTTCTTCCCCAGAGAGACCCATCCCCCAGCTACTTACCTTCCTTCGGATTTTTATGTCTCTCCCTTGTTCAACGTAGCATCTGGGTATGGAAATCAGAATCTCAACATGGATTTTCGGCATCAAGGTGCCTCACAAGTAAAAGGAGAGGAGATCTGGTAG