Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00228 LG1 4532212 4535731 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of seed germination, regulation of transcription, DNA-templated, response to abscisic acid, regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, response to salt stress, positive regulation of cutin biosynthetic process, regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process, response to water deprivation, regulation of growth, positive regulation of fatty acid biosynthetic process, response to salt stress, regulation of transcription, DNA-templated, response to water deprivation, negative regulation of seed germination, positive regulation of cutin biosynthetic process, positive regulation of fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, regulation of transcription, DNA-templated, response to water deprivation, regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process, response to abscisic acid, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A,T 4532518 stop_gained p.Gln198*
G/A 4532527 missense_variant p.Pro195Ser
C/T 4532568 missense_variant p.Arg181Lys
T/C 4532653 intron_variant
A/C,* 4532686 intron_variant
A/G 4532758 intron_variant
T/G 4532809 intron_variant
A/C 4532819 intron_variant
A/G 4532832 intron_variant
C/G 4532840 intron_variant
G/A 4532848 intron_variant
C/T 4532853 intron_variant
C/T 4532864 intron_variant
C/T 4532868 intron_variant
A/G 4532876 intron_variant
A/G 4532878 intron_variant
A/T 4532884 intron_variant
A/G 4532887 intron_variant
C/T,* 4532889 intron_variant
T/C 4532902 intron_variant
G/A 4532977 intron_variant
T/G,A 4533000 intron_variant
G/A 4533048 intron_variant
C/A 4533219 intron_variant
A/C 4533655 intron_variant
G/C,A 4533674 intron_variant
G/A 4533704 intron_variant
G/A 4533705 intron_variant
C/T 4533909 intron_variant
C/A,* 4534316 intron_variant
T/A 4534420 intron_variant
T/A 4534429 intron_variant
C/A 4534431 intron_variant
G/C 4534532 intron_variant
T/C 4534533 intron_variant
G/T 4534702 missense_variant p.Thr136Asn
G/A 4534709 stop_gained p.Gln134*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00228.1
MARKSQKTLKNTDTNNNTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAAAYDMAAIEYRGANAVTNFDVSRYINWPGPKSEEEHKNVAINENVNSNGDIELGFVSHEHGSITDENTTEHVAQSTESNPSRRTFPEDIQTIFESQGPDIYTENDDIIFGDLGSFGAPIFHFELDV*


CDS Sequence:
>Vu_00228.1
ATGGCCAGAAAATCGCAGAAAACCCTCAAGAACACTGACACCAACAACAACACTGCAAAACGCACACGCAAAACCGTTCCGAGAGACTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATCTCTGGGACAAAAACTGTTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGGGGCGTATGATGATGAAGAAGCCGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTAACAAATTATGAGGAGAAGCTGAAGGAAATGGAGGGTCAATCGAAAGAAGAATACATTGGATCCTTGAGAAGAAAAAGCAGTGGATTTTCTCGAGGAGTTTCAAAATACCGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTCGGCAACAAATACCTATATCTTGGAACATATGCTACACAAGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAATACAGAGGAGCTAATGCTGTTACAAACTTTGACGTGAGCCGTTATATCAATTGGCCAGGTCCTAAAAGCGAAGAAGAGCACAAAAATGTTGCTATAAATGAAAATGTAAACTCTAATGGCGATATTGAACTAGGATTTGTTTCACATGAACATGGTTCAATCACTGATGAGAACACAACAGAGCATGTAGCACAATCTACAGAGTCAAATCCTTCTCGTCGCACATTCCCAGAAGACATTCAAACAATTTTTGAGAGTCAAGGACCAGACATCTATACTGAAAATGATGATATCATTTTTGGTGATTTGGGTTCATTTGGGGCACCAATTTTTCATTTCGAGCTTGATGTTTAG


Promoter Sequence:
>Vu_00228::LG1:4535731-4537731(-)
TTTAAGGTTAAGGGTATTTTAATAATTTTCATTCTCAAAACTTAAAAAAAAAAAAAAAGAAACCCCCAAACCCTTACTCACCTCTCTCATTCCTCTCAATCCTTTCTCTTTCATCTCTCTCACTCCAACCTTTTCTCTGTCATCTCTACTGTAGCCCCAATTGAAAAAAAATCAGAATTCATTCAAGATCTCTTCAATTTCACCATCTTCACTAACCTCTCTAATTTCATCATCTGTATTTGTTGAATCATCATCTCTAAAAAAACCCTCCAGGCCAATTACCAATTCTTTCGGATGTCATTATGCTTGTGAAAATTAGATAAAATTATATACGACACTAACCTCTCTAATTTCATCATCTGTATTTGTTGAATCATCATCTCTAAAAAAACCCTCCAGGCCAATTACCAATTCTTTCGGATGTCATTATGCTTGTGAAAATTAGATAAAATTATATACGACAAAAATTATAAAATGAAAACTCATTATAAAGTCATTTTTTGTAAGAAATTGTTTAACAACTGAGTGTTTCTAATTTTTTTTCAGGCCAATTACCAATTCCTTTGATGTCATTATGCTTGTGAAAATTAGATAAAATTAGATTAGACAAAAATTATAAAATAAAAACTCATTATAAAATTGTAAGAAATTGTTTAACAGCAAGTATTTCTGATTTTTTTCCACGTCAATTATCAATTCCTTTATGCTTGTAAAAATTGGATAAAATTAGATAAGACAAAAATTATAAGATGAAAACTCATTATAAAATCATTTTTTTGTAAGATTGTTTAACAGCAAGTGTTTCTGATTTTTTCAATTGGGGCTACAGTAGGGATGACAGAGAAAAGATTGGAGTGAGAAAGAGGAAAGAGAAAGAGTTGAGAGGAATGAGAGAGGTGAGTAAGGGTTTGGGGGATTTCTTTTTTTCCTTTTTTAGTTTTGAGAATGAAAATTATTAAAATACCCTTAACCTTAAAACTTGGAATCCATGATATATAAGGATATTTTTGTCTACTAAAACCCGGTACACATTGCTAAAATGTACCAACTGAAAAACAGGCGTACGCGCGTTAGCAAACCCCATATATATATATATATATATATATATATATATAATTCTTAAATTAAATTATAAAGTATTTTGTTCTTCTATCTTAAAGAAGTTTTCATCTCTACAACACCTTAATAGGTCAATCATAGATACGTGAAATCGTCTGTTTGTTAGATCGTTAGTTAGATAGATAGCTTATATGACTTTTATAAAACGTAAGAACTAAATATTTTATTATTTAATTTAAATATCAAATATAATTTGTTTATAACAACTTAAAAACAAAAAACTAATTTAATCTAATATTTTTTAAATTTAATGGTCAAAAGAGAGTTATTTTCCAAAAATAAAAAATATAACTTTTACATACAAATCTTCAAAAATAGTATTTTTCTTATGATATAAAAATTAATTAGAAAATATTGTTGCAATTCATTGATTATGTTAGCTAAACTAACTGCCTAGGTTTCGTGTAACCACATTGACTTTACTTTTTTTTTTTTCATTCTTTAAAAGAGAATAGGTTACCCAACCAGAAGCAGTTTTACAGTGAAAAATATAATTACAAAAACTCAATAATATTAACTTATTAAAAAATGTAAGAATGGATGAAAAAGTTTATGAAAGCATTAATGATATGATAGAAAAGTAAAATACAGAAAAAGTATTAATGAAGTGTTAGAGATTATTACTCCTTTCCATCCTGAAGAATCTGTGTGTTCAACCACTAACCGCTACTGCATCAACAATAAAAAGGAAAATAAAATGTGAATAAATATATTATTAAATTATATAATTTATTTATGGGAGAAATAAAGAATAAACCTACTTTTTCATTCCCTCACTATTTCTATTAATTAATGCCTTTTTTATTGGATGACTTGGTCATATTTATAACCCTCTCGAACTGTATGCACTGCAGTGGTCCTCTCTTCTCTGCTGAGTTTTC


Gene Sequence:
>Vu_00228(-)
ATGGCCAGAAAATCGCAGAAAACCCTCAAGAACACTGACACCAACAACAACACTGCAAAACGCACACGCAAAACCGTTCCGAGAGACTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGGTTATAATTATAACAACACTTCTCACTGTCTACTCATCAATCCAGATCTATGTCTCTGACATTTTTCTTTTTCGTTTTCTTTCTTAGCTCTTTCCCGTGTTTCATAATGCTGTCTTCTCCTCAAATGGCTCATGAGCTTGTTTGCATGCATGTGGTTTTTTTTTTTCAGACATCGTTGGACTGGTCGGTATGAGGCTCATCTCTGGGACAAAAACTGTTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGGTTTGCTGCTTTTTTAATTTCATCTCTTCATTATCACTTCTCTCTCTGTTTCTGATTTTCTTCACATGATTTATGTTGTCATGTTGATTGTGTTCCGGCAATGGAAAACAACTCCGTTGATGCAGTGTATCTAGGTATGATATGAATCATGGTAACTTTCATTGATGTTGTTTTTTTCTTCCTTAATTTTTGGCATTGAAAATTGATTGCGATGGACTTTGTTAGGGGCGTATGATGATGAAGAAGCCGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCAGTATTATTTTTCTCACCTTTGATTCAAATGATGTTTCGATAAACAACTTTTGTTGTTCATACATCAGATTTGATCGATCAATGTTTTTGGTCACAGTTAACAAATTATGAGGAGAAGCTGAAGGAAATGGAGGGTCAATCGAAAGAAGAATACATTGGATCCTTGAGAAGGTTGATTTTCAGTTATTAATTCCATTAATTTCTACACATGATAATGCATTTCCGAAGCTTTTTCTCTGTCTTCTTTATTTTTGGAACTGTTGAAGTTGTTTCTTATTATATTCAATTTTCATTTTGCAGAAAAAGCAGTGGATTTTCTCGAGGAGTTTCAAAATACCGAGGTGTAGCAAGGTATTCCAACCTTGCTCTGTTTTGTTTGGAAAATGCTAGGTTTCGTGACATTTTATATATATATATATATTTTTAAAATATATAAATGTGGTAATTGTATCAGTTCTAAAAGAAATTAAAGGGAGTAGCTGAATAAAAGTCAGTCTATTGATAGACGAAAGGATAAATAGTGTAAATTATATAAAATATTATTTCTTTTGAAGTACAATAAATGAGTTAGTTTGCAGGTAGTATCCAATATTCTTGGAGGCAATTAGGAAAAATAAAATTAATAAAATATCCCATTTTAGATGGATTCTCTCAGGGAGAGAAGAAAAATACAAAAAGCAAAATAAATATAAGAAAAATTAAAATTTACATTTATAATTATTGAACAATATTTTTGTGCTAAAAGAGTAGTGAGTTCTCACCATTAGTTGTGGACATTTATTAAAATTTCATATTTTAAAGATCAATTATGTAAAATACAATAAGTGTGAAATTACAATCATATATACCAAACAAGTTTTTCAATGTCTCTAACTTTTAAGTTAATTTTCATAAACATAAACTTTCTCCCTCATTCCCTTTTTCTCTTTATATAGAAAAATGATATTTCAACACACATAAATTTATACATTTGACCCTGTTTTTTAATTTTTTTATTGTATTTTTTAAATACAAAAATTTATTTTTTTATAATTATTTTATTTTTGTAACGTGTTTTAAAAGCACGTTACTGAACCATTATTTCTCTGTATATAGTTAGTTAGATTGATGAAAAATAGTCTGAATTTTTGTTTAAAATGATTAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTCGGCAACAAATACCTATATCTTGGAACATATGGTAATTTTCTTAGACTATGATCTCATATTTAGATTAGGTATGACTCATAATTGTAAAAAAGAAAAAAAAGGGTGTTGGTGTCTATTTTAATTAATGGTTTTTATGTGCAATTCCCATCTTTACAACGAAGCATATGGTCTTTACATTTAAATGCATCTTTAATATGAAATTTTGAAATTGTATTTGACCATTGTTTGTAATTCTAACAAGAAAATACCTACTTCATTTCAAGAGGTCCCGCATAACAAATATAAAGGTCAAAATGTGCAATCAAATCACATTGGTTGCAATATAGATCACCAAACTCCAACTGCTTAATAAAGCTATTTAAGAGTGACATCATTCTTCCCTGTTCTTTTTTATTCTAAACCAAACCGAAAGAAGAAGAAATATCATAGGTTTGGTAGTGACATGGGCATATGTCTCAACACATTATGTCAAAATTGTACCTTAGGTTTTAACTGCTATTGTTCCTTACCTAATTAAATATAAAGTTTAGAGTAACAATATAATGACATATATTTATATTTATTTTACACCCATTATAAAGATCAAGTAGTTATAAAAAAAATGAATTTTTGTATTTTAAAAAAAAATAGTAGTATTAAATGAAGGTAAAAATATTATATATATTAAAGTATTATTTCTGAAAAGTTTAATATCTAATTTTTAATATATTTTCAACTTACTTTATCTTAAAGGATTTCATGTGTACTAAAGACAAAATTAATTTACAATATATAAATACATGTAAATATAATCTCAAAAACTTAAGTTTCTAAAATTAATCGGGTTAAATATGTCTTTTTTTTCTTAAATTTTTTTAAAATTAGAATAGTCCCTCTTAGAAATTTTGGTCCAACTTAGTTCTTTAATTTTATAAATGGGTAGATTTAGTCTTTTTAACCAAAATTTATTAAGTTTATTTGATGTTTCAAATGTATTTCATGATAGCATTTGAGTTGTTTACATTGTTTGACACATTTTTTCTTCAATGTTAGTTGAGAAACACATTTAAAACCTTAAATAAAATTAACAAAATTTGATTAAAAAGATTAATTTCACCTACTTCTAAAGATGTGAGACTAAATTAGACCAAAATTTTGAAGAGTCACTAATTTCGATTTTTACTGAAAGTTAAAGAGCCAAAAATATATTTAACTTAAATTGATTTAGATTTTAAAATTTTCATGTTATATTTGCAGCTACACAAGAAGAGGCAGCAGCAGCATATGACATGGCAGCCATAGAATACAGAGGAGCTAATGCTGTTACAAACTTTGACGTGAGCCGTTATATCAATTGGCCAGGTCCTAAAAGCGAAGAAGAGCACAAAAATGTTGCTATAAATGAAAATGTAAACTCTAATGGCGATATTGAACTAGGATTTGTTTCACATGAACATGGTTCAATCACTGATGAGAACACAACAGAGCATGTAGCACAATCTACAGAGTCAAATCCTTCTCGTCGCACATTCCCAGAAGACATTCAAACAATTTTTGAGAGTCAAGGACCAGACATCTATACTGAAAATGATGATATCATTTTTGGTGATTTGGGTTCATTTGGGGCACCAATTTTTCATTTCGAGCTTGATGTTTAG