Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00254 LG1 4859568 4862370 PREDICTED: probable WRKY transcription factor 25
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   systemic acquired resistance, systemic acquired resistance, response to water deprivation, camalexin biosynthetic process, systemic acquired resistance, cellular heat acclimation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to heat, positive regulation of autophagy, response to water deprivation, camalexin biosynthetic process, cellular response to heat, positive regulation of autophagy, cellular heat acclimation, defense response to fungus, response to heat, cellular heat acclimation, defense response to bacterium, positive regulation of autophagy, response to osmotic stress, response to cold, response to cold, cellular response to heat, response to osmotic stress, response to water deprivation, regulation of transcription, DNA-templated, defense response to fungus, response to heat, camalexin biosynthetic process, defense response to bacterium, regulation of transcription, DNA-templated, camalexin biosynthetic process, defense response to fungus, response to salt stress, defense response to bacterium, response to salt stress
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
T/C 4859574 missense_variant p.Tyr528Cys
G/A 4859622 missense_variant p.Pro512Leu
A/T 4859880 missense_variant p.Val426Glu
T/A 4859999 intron_variant
A/G 4860027 intron_variant
A/G 4860164 intron_variant
A/G 4860199 intron_variant
G/A 4860237 intron_variant
C/T 4860250 intron_variant
A/G 4860259 intron_variant
A/G 4860313 intron_variant
C/A 4860340 intron_variant
C/T 4860430 intron_variant
T/C 4860433 intron_variant
G/A 4860437 intron_variant
A/T 4860444 intron_variant
T/A 4860445 intron_variant
A/C 4860490 intron_variant
G/C 4860575 missense_variant p.Ala407Gly
G/T 4860587 missense_variant p.Ser403Tyr
T/C 4860611 missense_variant p.Tyr395Cys
T/C 4860635 missense_variant p.Gln387Arg
A/G 4860694 intron_variant
A/T 4860703 intron_variant
A/C 4860720 intron_variant
A/T 4860724 intron_variant
C/T 4860752 intron_variant
A/T 4860843 synonymous_variant p.Ser356Ser
G/C 4860844 missense_variant p.Ser356Cys
T/C 4860855 synonymous_variant p.Gln352Gln
G/C 4860915 synonymous_variant p.Ala332Ala
A/G,C 4860991 missense_variant p.Leu307Arg
T/C 4861023 synonymous_variant p.Arg296Arg
G/A 4861032 synonymous_variant p.Ser293Ser
T/A 4861063 missense_variant p.Lys283Met
T/C 4861116 synonymous_variant p.Thr265Thr
G/A 4861122 synonymous_variant p.Cys263Cys
G/A,T 4861130 missense_variant p.Pro261Ser
T/A 4861170 missense_variant p.Lys247Asn
C/A 4861173 synonymous_variant p.Val246Val
T/C 4861191 synonymous_variant p.Lys240Lys
T/C 4861206 synonymous_variant p.Gly235Gly
G/T 4861246 missense_variant p.Pro222His
G/A 4861342 missense_variant p.Thr190Ile
G/A 4861422 intron_variant
A/G 4861425 intron_variant
C/T 4861503 missense_variant p.Ala163Thr
T/C 4861580 missense_variant p.Asn137Ser
C/A 4861613 missense_variant p.Gly126Val
C/A 4861675 synonymous_variant p.Leu105Leu
T/C 4861715 intron_variant
C/G 4861716 intron_variant
T/A 4861751 intron_variant
A/G 4861768 intron_variant
T/C 4861779 intron_variant
T/A 4861783 intron_variant
A/G 4861786 intron_variant
A/T 4861795 intron_variant
C/A 4861825 intron_variant
C/T 4861938 intron_variant
G/T 4861955 intron_variant
T/C 4862005 intron_variant
G/C 4862030 intron_variant
C/A 4862083 synonymous_variant p.Pro96Pro
G/A 4862121 missense_variant p.Pro84Ser
T/G 4862124 missense_variant p.Ile83Leu
A/T 4862125 synonymous_variant p.Ala82Ala
C/T 4862367 missense_variant p.Ala2Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00254.1
MASSTGSLDTSASANSFTNFTFATHPFMTTSFSDLLASPTDNNRSQGALSEKNASGVPKFKSTPPPSLPLSPPPISPSSYFAIPPGLSPAELLDSPVLLNSSNILPSPTTGAFVSQSFNWKSSSGGNQQIVKEEDKNFSNFSFQTQTRPPASSTLTYQSSNVAVQAQNPWNFQDATKQDSFSSGKSMMKTENSSSMHSFPPEIASVQTNHSNGFQSDFGNYPPQSQTLNRKSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQSTRRNSSSSSSLPILPSNPISNEIQDQSYATHGSGQMDSAATPDNSSISIGDDDFEQSSQKCKSGGDEYDEDEPDAKRWKIEGENEGMSAPGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPSGSHSVNRPLPNNAANPTTAATAIRPLPVIHHSDNSVQSQRPQAPPSGQSPFTLEMLQSPGNFGFSSFGNPMGSYVNHQQLSDNVFSSRTKEEPRDDLFLESLLC*


CDS Sequence:
>Vu_00254.1
ATGGCTTCTTCTACTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCTTTCACCAACTTCACCTTCGCCACGCATCCCTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCACAGACAACAACAGGTCTCAGGGTGCTTTGTCTGAAAAAAATGCCTCTGGTGTGCCCAAATTCAAGTCCACTCCACCTCCTTCTTTGCCTCTTTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTCCGGTTCTCCTCAACTCTTCTAATATACTGCCGTCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTAAAAGAAGAAGACAAAAACTTCTCAAATTTCTCTTTCCAGACCCAGACGAGGCCTCCTGCTTCATCCACATTAACATATCAATCTTCAAATGTTGCAGTTCAAGCACAAAATCCATGGAATTTTCAGGATGCCACAAAACAAGATAGTTTTTCTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCACAGTTTCCCTCCTGAGATTGCCAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCACAATCTCAGACCTTAAACAGAAAGTCAGATGATGGATACAATTGGAGGAAATATGGCCAAAAACAAGTGAAAGGGAGTGAGAATCCGAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCCACTAGGAGAAACTCATCATCGTCCTCTTCTCTTCCAATCCTTCCTTCAAATCCCATCAGCAATGAAATCCAAGATCAATCATATGCGACTCATGGTAGTGGACAAATGGATTCCGCCGCCACCCCAGATAACTCATCTATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCTGGTGGAGATGAATATGATGAAGATGAACCTGATGCAAAAAGATGGAAAATTGAAGGAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTAAGAGAACCTAGAGTTGTGGTACAGACAACCAGTGACATTGATATCTTAGACGATGGCTACAGATGGAGAAAATATGGGCAGAAAGTAGTAAAGGGCAATCCAAATCCAAGTGGTAGCCATTCTGTTAACAGACCCCTGCCAAACAATGCTGCAAACCCCACCACAGCAGCCACTGCCATAAGGCCATTGCCAGTGATCCATCATTCTGACAACTCTGTTCAAAGCCAAAGGCCACAAGCACCACCATCAGGGCAATCACCCTTCACCCTAGAGATGTTACAAAGTCCAGGAAATTTTGGATTCTCAAGTTTTGGAAATCCAATGGGTTCTTACGTGAACCACCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACTTGTTCCTTGAATCTCTCCTATGCTGA


Promoter Sequence:
>Vu_00254::LG1:4862370-4864370(-)
ATTCATGATAATAATATTAAAATATTTTATTATATTAAATAAAAACGTCTTTATTAAATTGCAAAGTGGTAAAATTACACTTATGATAAAAAATTCAAAAATAGAAGTAAATATAAATCAAATTTAGACATAGATCTTTCAACTTTTAAGCTTCATCATAAATGAAATTAAATTATTGTATTATACTTAATAAAACATCTTTATTCAATTGAATGGTAAAATTGCGCTCATAATAAGGAATTAGAAAATATAAGTAATTATATACAAAATTATTAGAAAATATTCTACATAACATAAAACAACAAATAAAAATATCAAAAAAGACAAAAATATCAAATGTATTTTCTATAAGTGATTTGACACACAATTGAATGAAATTATATAAAGAAAAAAAGATATGATCAAAAGTATAATAGAAAGTTACTTGATATTAGACCACATTTTCCAAATATCAAACTAATAAAACTATTCAAAAAGATAATGAAAATTGTTTGAAAAAACAAAAAAAAAATTAAATAAAAAGAAAATAAAAAAGATAAGCTTTTTTATATTATCAGTAAATAAATGGTTTACGAAATTAAACGTTTGAAATCTAAAAACTATTTAATTAACTAAAATTGATAATACACCAATTCAATATAATTATACAAATAAAAAAGTTAATTGTGATAAAAGAAAATTTGAATATGTGAATGAATTTAGTGATATATAAAAAACTAAACAATTAAAAGAATGAAAAAAATTGAATAGCAGGAGAAAATAAAAGGGTTACAAAACTAAATACTAAATAAGTAATTTGGATATTAATTTTAATAGCTTAATTAATTTTTAAGTTCGTCATAAGTATTTTTAATTGATTTTTTATTATTGTTTACAAATTTTATATTTTTAAATTGAATCTCAATTATTTACTTTGAGTCACGTAGTTGATATCTTGTTCACAATCTTCTTTATTTTCATTTATTAAGAAAATAAGGTTATGTAGTTAATATAAAATTAGAATAATATTTTAATAATATAAGGTCACATGTTACTTTTATTGCTTTTATTTTAAATTGTCTTGGTTATTATCAATAATGGTGACATATATAATTATTAGATAACTAAAAATGATGATGTGAAAGCTATTAAATAAACATAATAATTTCATTATTTAACAAACTTTTAATAAGAATGAGAAATCATTTTACATTTGTTGTAATATCAATTTTATATTGTTCTTAACACATATACAAATTAGTAAGGAAGATAACATAATAAAATAATAATTATTTATCCTATTAAAAGAATTAAGTGGCATATTTAATTAAAAAATATAGAATAATAAGAAAATGAAAGAAGACTCAATTAAAAATATCCAAATTCATCCTTAGTTAAACTTAATTTTTTTAAGGTATTCTTTATCATTGTTTTTATTATTTTTTTCTTATTATTACAATTTGTCTCATTTCTCTTATATCTCATCTTCTTTACCATTATATTTTCATTTTCCAACACATTATGTAAGCAGTCTGTCAATTTATCTCTCTTTTTATGTGTCTTGTTTCCCCTGACACACGGAACATGTACAGAAGTGTTCACATAAACACCTTTTTGTGTTTCTTAAAAAAAAAAACAAAAGCAATCTTTGTTAGTCTTTTAAAGCATAGGAGCTGAAGCCATTGAAGATTCCAAACTACACACAAGCAGTAACACAAACAAAGAAGCAAATCTCAGTGCAAGCCTAGCAGCCATCCAGTCAAACCCACGAGCTTTGACTAAAAAAAGCACTTTTAAAAATTTCAAAAAATAGAAAAAAAAGATATACACGGTGGCAATTTTTCAGCGGTCAAACAATCCCTTCATTTCTAGTTTCTTACCTTCCCAGAAATATCGTCTCCCAATAGAAACCAAAGCCTTGTGCAATACGTACCCTCATCCTCTTTATATTAAACATTTCCATTTCCAACTTTCAAAGATTTTCTCTCCACTCCTTCTTCTTCTTCTTCTTTTTCTCTCCC


Gene Sequence:
>Vu_00254(-)
ATGGCTTCTTCTACTGGTAGTTTAGACACCTCTGCAAGTGCAAACTCTTTCACCAACTTCACCTTCGCCACGCATCCCTTCATGACCACTTCTTTCTCTGACCTCCTTGCTTCTCCCACAGACAACAACAGGTCTCAGGGTGCTTTGTCTGAAAAAAATGCCTCTGGTGTGCCCAAATTCAAGTCCACTCCACCTCCTTCTTTGCCTCTTTCTCCTCCTCCCATTTCTCCTTCTTCTTACTTTGCTATTCCACCTGGTTTGAGCCCTGCTGAGCTTCTTGACTCTCCGGTTCTCCTCAACTCTTCTAATGTCAGTTTCACCCCCTTCTCTTGTCTTACTTCTTTTGTTGTTTGAGTCAGGTAGTTAAGAAAAGTTTGAACAAACAAAAAAAAAATGAAAGAGTTTTTTTAGTTTTCGATGGATATTTATGTTGGAACCAGACATGATTAGCATGAGTTGTCTGAGAGAGTTTTGTAGTTTAGTTTTTCTTTTTTGTTTTCGACTTATGTGAGATAATTGTGTCATGTAAGTAAGAGATTTGTTCCGTAGTTTGTATGTCAAAACAAGGAGATTTCTTTGGAATTTGAACTTACTTTTTGCTTTAGATTTTTGTTTTCTGATTTTATAATTTTGTTTTCACCGACTTTTTTTGTTGATGTTGAATTAATGAGTTTGTGTTTCTAAATACAGATACTGCCGTCTCCAACAACTGGAGCATTTGTTTCTCAGAGCTTCAATTGGAAGAGCAGTTCAGGGGGAAACCAGCAAATTGTAAAAGAAGAAGACAAAAACTTCTCAAATTTCTCTTTCCAGACCCAGACGAGGCCTCCTGCTTCATCCACATTAACATATCAATCTTCAAATGTTGCAGTTCAAGCAGTAAGTTGCTTTTCTCTTGTTAGATTTTTGCATTATATGTTATTCTTTTCTAAATTTTCAATCTGATCCCTTGCAACAGCAAAATCCATGGAATTTTCAGGATGCCACAAAACAAGATAGTTTTTCTTCAGGGAAGAGTATGATGAAAACTGAAAACTCTTCTTCCATGCACAGTTTCCCTCCTGAGATTGCCAGTGTCCAAACTAACCATAGCAATGGGTTTCAATCTGATTTTGGAAATTATCCCCCACAATCTCAGACCTTAAACAGAAAGTCAGATGATGGATACAATTGGAGGAAATATGGCCAAAAACAAGTGAAAGGGAGTGAGAATCCGAGAAGTTATTACAAATGCACATACCCCAATTGCCCTACAAAGAAGAAGGTTGAGAGGTCTTTAGATGGACAAATTACTGAGATAGTTTATAAGGGTACTCATAACCATCCCAAGCCTCAATCCACTAGGAGAAACTCATCATCGTCCTCTTCTCTTCCAATCCTTCCTTCAAATCCCATCAGCAATGAAATCCAAGATCAATCATATGCGACTCATGGTAGTGGACAAATGGATTCCGCCGCCACCCCAGATAACTCATCTATATCAATAGGAGATGATGATTTTGAGCAGAGTTCTCAAAAGTGTAAATCTGGTGGAGATGAATATGATGAAGATGAACCTGATGCAAAAAGATGGTGAGTTTTTCACTTCATTACTTTTGTATCATAATTAAGGTTCCCTGTTCCACTTTTTCTTGTAGTATCATTTGTGTGTTTGATTCCATATCTAATTTTTTCATTAATTTTTCAGGAAAATTGAAGGAGAAAATGAGGGTATGTCAGCGCCTGGTAGTAGAACAGTAAGAGAACCTAGAGTTGTGGTACAGACAACCAGTGACATTGATATCTTAGACGATGGCTACAGATGGAGAAAATATGGGCAGAAAGTAGTAAAGGGCAATCCAAATCCAAGGTAAACAAAGACACTCACTGTAGTTTTAACTTTTGTCCAACTTTTTACAAGTTGTTATACTTTGAAGAAACAGTAGATGGAATCCATTAAGGAATTCCTCATTCTCATGCTAATTATAATTGAAACAGTTGGATTTAGATATAAAGAATTTCCCTAGGAGACTAACAGGAATTCCTTGTAGGTAATGTAGTTATTAACTTACTTTATATGGCGGTAGGTAAATTTTTTTTGTAAGTGTACATACCATTTTGTCTTATGTAAATGTGGTAAAGACATTATAACTGCATGATGACTGCTATTTCTTTGCCTATATCTTCCTATCTTGTAATGATGATTTTCTTTGTGGAAATTCTGCTATACTACTATACTTGTGCCAGTTTTTCTTTTCCCTTGTCTGAAATTCCTTGGTCAAATTTGGTAACTTTGATTTTTCTCATGTGATCTAGAAGAATAAAAGTACTCTCGCATTAGCTGGTCTGATATTGTTATTAACTTGTGACATGTAGGAGTTACTACAAGTGCACACACCCAGGATGTCCAGTGAGAAAGCACGTGGAACGAGCCTCACATGACCTCAGAGCTGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCTGCAGCCCGTGGCAGTGGTAGCCATTCTGTTAACAGACCCCTGCCAAACAATGCTGCAAACCCCACCACAGCAGCCACTGCCATAAGGCCATTGCCAGTGATCCATCATTCTGACAACTCTGTTCAAAGCCAAAGGCCACAAGCACCACCATCAGGGCAATCACCCTTCACCCTAGAGATGTTACAAAGTCCAGGAAATTTTGGATTCTCAAGTTTTGGAAATCCAATGGGTTCTTACGTGAACCACCAACAATTATCTGACAATGTTTTCTCCTCCAGAACCAAGGAGGAGCCCAGAGATGACTTGTTCCTTGAATCTCTCCTATGCTGA