Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00284 LG1 5348446 5349495 PREDICTED: LOB domain-containing protein 13 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, lateral root formation, lateral root formation, lateral root formation, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/G 5348570 missense_variant p.Leu205Pro
G/T 5348588 missense_variant p.Pro199His
G/C 5348702 missense_variant p.Ala161Gly
A/G 5348720 missense_variant p.Leu155Pro
C/G 5348761 missense_variant p.Arg141Ser
C/T 5348773 synonymous_variant p.Leu137Leu
G/A 5348788 synonymous_variant p.Ser132Ser
T/C 5348811 missense_variant p.Thr125Ala
A/C 5348836 synonymous_variant p.Val116Val
C/G 5348919 splice_region_variant&intron_variant
T/A 5348921 intron_variant
A/G 5349133 missense_variant p.Phe51Ser
G/T 5349153 synonymous_variant p.Pro44Pro
T/C 5349339 intron_variant
C/G 5349349 intron_variant
T/C 5349357 intron_variant
G/A 5349380 intron_variant
T/C 5349383 intron_variant
G/C 5349385 intron_variant
A/G,* 5349404 intron_variant
G/T,* 5349408 intron_variant
C/G 5349467 splice_region_variant&intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00284.1
MFGHQDIDRLEEITKVRAEVEASSQMGRKHFYGPTPGITLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEGQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAEILKYKYREAASLISSNHAALVSSADAISAAIPTNSQPQGLSQPLTPPPPPKPLHTPPLKPLLSPSVILSSFSSSSTSSVYTPPKSSMSLGSISSTENVPYFV*


CDS Sequence:
>Vu_00284.1
ATGTTTGGACATCAGGATATAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCTTCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTGAGAGATCCTGTTTATGGATGCATGGGTGCAATATCAACTTTGCAGCAACAAGTTCAATCCTTACAAGCAGAACTGAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACCATTGCATACTCCTCCACTAAAACCATTGCTTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG


Promoter Sequence:
>Vu_00284::LG1:5349495-5351495(-)
ATGAATTTTATTTGAGTATTTATTTGTAGATTTAAGTTACTAAAATTAAATTATTATTAGTCAGAAAAATATGAATCATGAAATAATTAATTAAATTTTGATTTCAAATATTTCTAATTTTTTTTTATTTGAGCATATGAAAATTGAAGTTATTTTATAAAATATTTATTTTTAAATATTTATATTTCGATATTGCTCATTTAAATTTATTTTTTAAAAACCCAAATTTATTTATATTAATATTTTATTGACTATAATTTGATTTGAATAGTACTTAAAATTATTTTTTATCTGAATCTATATTTGAAAAAATTATTTTTAAATAATTTTATTTCAATATTAAAAGATAAATTATAGAAATATCCGTTAGTATCCATAAATACCCGCATATATATATATATATATATATATATATATAAAAGAAAACTTATAGATATTTTTTCATGATGATAAATAATGGGATAAATAATAGGATATATTTATTTAGTATATGGAGTAAGAAGACCCAATCCGTTATCATTCTAAGTGAGATTGTTAAAGTTTCTTTAAAGGCAACAAAAGAAGTTTTGGTGAGGCATGACATGAAGCTACACATTTTGGAATAACTTAGGTAGGGTCATGGAAGGAAAAAATAAGTTTGTCGTGAGAACTTAATTTACATAACGAAAAAAGGTTTGTATATGAGAGGTGAGGTGATGTTGATGCTGAGCCCGTGCAATACACACAATCTGTTTGATTAAAGTTCTCTATCATTCATTCTCTCAATTCAAATTATCCGCCCTTCAATTTAAACTGTTTCCAAGCTCAAGGGGAGAAAATGACCAAAGATACTTAAGAACTGCAATCTTTTTATTTAGGATAATAATTGTTTGATAATTTTTTTTATAATATTTTAATATTATTTATGTGTTATTCTGTTATTGGTTTATGTTGGTGTTTATGATTATTATTATTGATTGTGAAGTAATTTTAGACTAATCACAAAATAACACGATATTAAAATGTTGCCAAAAAATTGTTGTGAAAGTGTTATTATTTATTTATTTAATTGGTCCCTCATACTTGAAAATTTATGTAACAAATATAACAAGAAAAATAATTTTTTAACAACTTTTTTTTTATAACTTTTTATAATAATTTATATATTAGTTTATAACTGATTCATTTAAAAAAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGTTGTTTCTGGTTTTCGTTTCAAAGTAAGGTACAATTTGGTCCTCATTTTTTTCGAAACGTTCATTTTAGTCCTCGAAAACTAAACACTGTTTAAAAATTTGGTCCTTAAATGAGGATTAAAACCAAAATTCCGAGGACTAAAACAAACGTTTCGAAAAGAATAAGGACCAAATTGTACCTTTGAAAGAGGAACGAAAACCAGAAACGACCAATAATTTAGAGACTAAAAACATATTTAACCCTTTAAAAAAATATACCGACGAATAAGATAGTATGACTTAATTCATTATAAAAAATTGTTAATATATCGTATGCGTACCACAATAAACAGAAGTACACCACTTTGCAACCCATACTAGTTTCTCCGATAATTTTTTGAGAAAACTCAATTGCTGAGTAGTCTGACACTGATGTAAATTGTTTCTTGTATTTTTTTTTTCCAAAGTCAATTCTCAGTTTCCAATAGAACTAACACGTGTGCAAGCTATTGACAAAGAGTGCTACCTCTCTCTCTTTAAATGCTTAATGCAACCTAATCATTTTGTTTGTATTTTCTCCTTCCCCTTAATTAAATATTTCTGTTAAAAATATTCATATGATCTGCAGACTTTTTTTCTTCTAATAATTCCTATCTTTTTTCTCATAAAAAGCATTGACCTACTTTTCCTAATCACCACCACCTTGCCTTTAAGGACTCGTTTCCCTGCCTTTTCTCTCACCTTCTGTGTCTCTGTATGAAACAAAATCTTTCTCCCTCCCAACCCTCCACTCAGTTCAAGAAAATCAAAAAGGC


Gene Sequence:
>Vu_00284(-)
ATGTTTGGACATCAGGATATAGGTAAATGTTAGAAAAATACACATAAATTTTCTTGCTCTCATAAGAATCAATTTACTCATGAGTTGCAATTAGTAGCATACCATTTTAACTATGCTTTTGGTTTTGGTGATGGTGCTAAGAGCATGATGCTCTTAAATCACCCAAAATACAAACTATTTTTTCTTTACAGATTGATGGTTTTAACATGCAGTTTTTGTATTTTCCCAAAGATAGATTAGAGGAGATAACAAAGGTGAGAGCAGAGGTGGAGGCTTCTTCTCAAATGGGAAGGAAGCATTTCTATGGTCCAACTCCTGGGATAACCTTAAACACAGTAACCCCTTGTGCTGCATGCAAGCTTTTGAGAAGAAGGTGTGCTGAAGAATGCCCTTTCTCTCCTTATTTTTCACCACACGAGCCTCAAAAGTTTGTAGCCGTTCACAAAGTGTTTGGTGCAAGCAATGTCTCCAAGATGCTTCTGGTTGGTGCCAAACTAGCTCCTCACACCAGAATAGTTACTCTTTTTTGTTCTTCAATTGGATAAAAACTGTCTTGTTTTCAAATTTTATTTTTATGTGTAGGAGGTACCAGAGGGCCAAAGAGCTGATGCAGCAAATAGCCTTGTTTACGAAGCTAACTTGAGGCTGAGAGATCCTGTTTATGGATGCATGGGTGCAATATCAACTTTGCAGCAACAAGTTCAATCCTTACAAGCAGAACTGAATGCAATAAGGGCAGAGATACTAAAATACAAATATAGAGAGGCTGCAAGTCTCATTTCTTCTAATCATGCAGCTTTGGTTTCTTCAGCTGATGCAATCTCAGCAGCAATTCCCACAAACTCACAACCACAAGGTCTTTCTCAACCTCTTACTCCTCCTCCTCCACCAAAACCATTGCATACTCCTCCACTAAAACCATTGCTTTCTCCTTCTGTTATCCTTTCATCCTTCTCTTCATCTTCAACTTCTTCTGTGTACACTCCTCCTAAAAGCTCAATGAGCCTTGGATCCATTTCCAGCACTGAAAATGTCCCATACTTTGTTTAG