Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00292 LG1 5443200 5446372 PREDICTED: transcription factor MYB108-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, positive regulation of unsaturated fatty acid biosynthetic process, somatic embryogenesis, regulation of endosperm development, positive regulation of transcription, DNA-templated, positive regulation of fatty acid biosynthetic process, regulation of endosperm development, positive regulation of transcription, DNA-templated, regulation of embryonic development, somatic embryogenesis, negative regulation of endosperm development, regulation of glucosinolate biosynthetic process, positive regulation of transcription, DNA-templated, regulation of glucosinolate biosynthetic process, positive regulation of transcription, DNA-templated, regulation of embryonic development, regulation of endosperm development, negative regulation of seed maturation, positive regulation of fatty acid biosynthetic process, regulation of seed maturation, regulation of glucosinolate biosynthetic process, vegetative to reproductive phase transition of meristem, fatty acid homeostasis, regulation of glucosinolate biosynthetic process, endosperm development, positive regulation of transcription, DNA-templated, regulation of seed maturation, positive regulation of fatty acid biosynthetic process, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, somatic embryogenesis, regulation of endosperm development, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, vegetative to reproductive phase transition of meristem, vegetative to reproductive phase transition of meristem, regulation of glucosinolate biosynthetic process, somatic embryogenesis, positive regulation of transcription, DNA-templated, regulation of seed maturation, negative regulation of endosperm development, endosperm development, positive regulation of transcription, DNA-templated, regulation of seed maturation, vegetative to reproductive phase transition of meristem, endosperm development, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, endosperm development, negative regulation of seed maturation, negative regulation of seed maturation, negative regulation of endosperm development, negative regulation of endosperm development, negative regulation of seed maturation, somatic embryogenesis, positive regulation of unsaturated fatty acid biosynthetic process, positive regulation of unsaturated fatty acid biosynthetic process, positive regulation of unsaturated fatty acid biosynthetic process, positive regulation of fatty acid biosynthetic process, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   sequence-specific DNA binding, sequence-specific DNA binding, sequence-specific DNA binding, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, sequence-specific DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G,* 5443449 missense_variant p.Asn84Asp
G/T 5443487 missense_variant p.Lys96Asn
G/C 5443535 synonymous_variant p.Val112Val
G/A 5443553 synonymous_variant p.Gln118Gln
A/G 5443803 intron_variant
C/T 5444121 stop_gained p.Gln197*
T/C 5444402 intron_variant
T/C 5444614 intron_variant
A/C 5445037 intron_variant
A/C 5445190 intron_variant
A/G 5445499 intron_variant
A/C 5445584 intron_variant
C/T 5445605 intron_variant
G/A 5445639 intron_variant
C/A 5445647 intron_variant
A/C 5445655 intron_variant
G/T 5445687 intron_variant
G/C 5445727 intron_variant
T/A 5445728 intron_variant
A/T 5445929 intron_variant
T/A 5445930 intron_variant
A/G 5446132 synonymous_variant p.Ser288Ser
C/T 5446188 missense_variant p.Ser307Leu
C/A 5446230 missense_variant p.Pro321Gln
A/T 5446239 missense_variant p.Asn324Ile
G/A 5446340 missense_variant p.Gly358Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00292.1
MEFDPCFQGPQYLSSICPKIPYLNPHAQNMFPSQSSIFIPPSQPIMFNPNHVFHHFQDHIVNVPPFVMDGSNPIVTPMYGSFANINSHQPVMLVPKNNSKIEALYDDHKGKVIWDFSQKTMVHPFEASSPNSPSPFCLSNEYGLGMSEFHRDTDRRMVEVENNTHNATHNIIKGQWTPEEDSGLVELVNQFGPKKWSEIAKLMCGRVGKQCRERWHNHLRPNIRKESWSLEEDMIVMKAHQEFGNRWSEIAKRLPGRTENSIKNHWNGTKRRQSCRSYNGSKKNPYEGSMLRAYVKRVTAMEESTKVSKKATSKKNLLRFDPCTNEMFIGNSSNYAPLQVKNNNIRVSYGAIGTNAINGGMNPISTKY*


CDS Sequence:
>Vu_00292.1
ATGGAGTTCGATCCGTGCTTTCAAGGGCCACAGTACCTATCTAGTATATGTCCCAAAATCCCCTACTTGAATCCACACGCTCAAAACATGTTTCCATCCCAAAGCTCCATTTTCATTCCTCCATCTCAACCCATCATGTTTAACCCTAACCATGTTTTCCACCATTTTCAAGACCACATCGTCAATGTCCCTCCGTTTGTGATGGACGGTTCCAACCCCATCGTAACCCCCATGTATGGGTCTTTTGCTAACATTAACAGTCACCAGCCTGTGATGTTAGTACCCAAGAACAACAGCAAAATTGAAGCTTTGTATGATGACCATAAAGGCAAAGTGATATGGGATTTTTCCCAGAAAACCATGGTTCATCCTTTTGAAGCGTCTTCTCCCAACTCACCATCTCCTTTCTGTCTCTCTAATGAGTATGGATTGGGTATGAGTGAATTTCATAGGGACACTGATCGAAGGATGGTAGAGGTGGAAAACAATACCCACAATGCTACTCATAATATAATCAAAGGACAGTGGACTCCCGAAGAAGACAGTGGTCTTGTGGAGTTGGTGAATCAATTTGGACCGAAGAAATGGTCAGAAATTGCAAAGTTGATGTGCGGCAGAGTTGGAAAGCAATGTCGAGAAAGATGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCGTGGAGCCTGGAAGAAGACATGATTGTGATGAAAGCCCACCAGGAATTTGGCAACAGGTGGTCAGAGATTGCTAAGAGGCTACCTGGAAGGACTGAAAATAGTATTAAGAATCATTGGAATGGAACCAAGAGACGCCAGAGTTGCAGGAGCTACAACGGGAGTAAGAAAAACCCTTACGAAGGATCAATGCTCCGTGCTTACGTTAAAAGGGTCACTGCTATGGAAGAATCTACAAAAGTGTCGAAGAAAGCCACAAGCAAAAAGAATTTGTTGAGGTTTGATCCATGTACAAACGAAATGTTTATTGGAAATAGCAGCAACTACGCGCCATTGCAAGTTAAAAATAATAATATTAGGGTTTCATATGGTGCAATTGGAACGAATGCAATCAACGGGGGAATGAATCCGATAAGTACAAAATACTGA


Promoter Sequence:
>Vu_00292::LG1:5441200-5443200(+)
TTCAAGAATGGAATAGATATGAAAAACTACATTTTCTTAAAAAATAGTTTGTTTTATTGCATATATTCTCTCGTTTTGATTTTATGAACTTGGTATTTTAAAAGACTTTTTAAGAAAATATTTGAGAAATATTATAATATAATATGATAATTATTATTTTGTAGTTTTATGTTTTATATCAATATATTGAACACTTAAATTAATAAACGATTTTCTATTAATTTGAAGTGTCTGTATCATCTAATTAACTGAAAAGTCTAACACTTACCACTCAATTGAAAAGCCTTAAAGTTTTTAGAATTCAATATTATACAAAACAAATTTAATAAGGACTCACAAACTTATAAAAAAAACTACTTAATTAAGCCTTTTATTTTTTATTTAATGCACTTAATTCAAAATTAAGTATTTTTTTAAATTTATTTTTCTTATTTGTATCGGTCCAATCAATGATTAGTGTATTTTTTTTATATTGTCTAACGTCGACTAACTCATGCTTATATTAAAAAAATATTTTTTTACCAGTTAAATCCACATAGAACTTTTAAGTATTTAATTATTTTTATTAGGACTTACATGGATTAGAGGATACTAAAGAATTTATTATTTATTTTAAATTATGAAATTATTTTTTATTTTAATGTTAAAAGCAAATTTTTACACTCCTAATTCAATTGAAAAATTTAAAATTTTTTAAAATCCAGTAGAGTAAAAAAATTAATAATTAATAAGAATTGGGAGTTTCTAAATTTATTCCGAATTTGAAACTTAATTTAGTGCACTTAGTTTTAAAACCGACTTTATAATTAATATATTTTTAAATTTTTTTTTCTTATTTAACATTGGTCCAACCAACACTATGATATAATGTATTTATTTATTTTTATATTACCTACTCAATATGGACTTGACTCATACTTATATTCATAAAAAAATATTGGATAAGTTAGATCCACACATAAATTTAATATATTTAATTATTTTTATTAGGATTAATAGATGATGTTAAAAAATATGTTGTTTATTTTAAATTAAAAATATTTTCTATTTTAATGTTACATATGTTAATGTAAATAACTTTTTTTTAATTTATATTCTCTATTCTTTATTTGCAATAATAATATTATTATATAAGTTATCATGAATATTCAATTTACGTCTTTGTTCTCTACATTTACTAGTTATACTGACAAATACTTTTTTTTATATAATAATCAATATACGCATTAATCCAACTTCGGACTGGGTTGGTAATTGTTAACCATTAATGGTAGGTTGGTAAAATTCTCCGCTTCACTAAACATATAAGACTTGACTATTTTTTTATTTTATTTTATTAAAGAACATTACTGGAAGGGGCAAAATCATCAAAAATATATAAATATAAAAGATAATATACATTTCAATAAACCAAATTATGACTAAGACATAAAGAGAGAAAAATATAAATATAAATATAAAAGATAATACATTTAAATCAACCAAATTATGACTAATGAAAATTAATGAGGAATTAAGTGTTAACAACAATTAGATGATATATATATATATATATATATATATATATATATATAATATATAGTAAATCCTAGATGATTATGTACCTGTATGGTCTTAACTAATTTGAATGTACTTATTTTAATTTGTAAAAATAATTAATAAAACCTAGTTATTAGATAGAAACAAATTAAAATTATGGTTATCCTTCCATCTTAACAATGTGGTTATAAATTTATGTTTATGATTCTTGTCAAAATTTTAAAAAAAAGTTGAATAAAGTCACATTTTGTTGCCAACATAGCAAAGAGTGGAACACGAACCGACACAGTGACTATGAATCACGACCGTAGAAAGCATACACATAAATTTCTTCACTGTACAAATCTATGTCAAACACTACATATAACTGTAAGAATCCTCTACTATATCTGCATACGTACAAGTTTCTCTCTTTCAGTCTCTGTTTCGTAACCCGCTGAATTGTTGTGAGCATTTTTACA


Gene Sequence:
>Vu_00292(+)
ATGGAGTTCGATCCGTGCTTTCAAGGGCCACAGTACCTATCTAGTATATGTCCCAAAATCCCCTACTTGAATCCACACGCTCAAAACATGTTTCCATCCCAAAGCTCCATTTTCATTCCTCCATCTCAACCCATCATGTTTAACCCTAACCATGTTTTCCACCATTTTCAAGACCACATCGTCAATGTCCCTCCGTTTGTGATGGACGGTTCCAACCCCATCGTAACCCCCATGTATGGGTCTTTTGCTAACATTAACAGTCACCAGCCTGTGATGTTAGTACCCAAGAACAACAGCAAAATTGAAGCTTTGTATGATGACCATAAAGGCAAAGTGATATGGGATTTTTCCCAGAAAACCATGGTTCATCCTTTTGAAGCGTCTTCTCCCAACTCACCATCTCCTTTCTGTCTCTCTAATGAGTATGGATTGGGTATGAGTGAATTTCATAGGGACACTGATCGAAGGATGGTAGAGGTGGAAAACAATACCCACAATGCTACTCATAATATAATCAAAGGACAGTGGACTCCCGAAGAAGACAGGTATATAAATTTCTGTCTCTCATTTTCTTTGATTTTTCTCATTTTTCCATCATGAAGAATAGAATAATTTAGTAATGAAAACTATTTATCTAGTGGTAATAATATAATGAAAATTATTAAATCATTTAAACAATTATATGTAAAACTTGTCATTTACTTTTATTTTGTTTTTGACGTGTTTTTAATAAAAATAAAGTCAACTAACCGATTGTATTTTAAACTATTCGTGATTTGCTTATATTTTAATTATTGAGAAGTTTTCTTTTCAGTCATCTGCCTATGCTGAAAAAATTATTAATGTTTAATTAAATCGAAATTTCTGGGTTTTGTAGTGGTCTTGTGGAGTTGGTGAATCAATTTGGACCGAAGAAATGGTCAGAAATTGCAAAGTTGATGTGCGGCAGAGTTGGAAAGCAATGTCGAGAAAGATGGCACAATCATCTCCGGCCAAACATTAGGGTTTTTCTTCCTTCCATTCTTATGAATATAGAACTTTTGGTTATGAGATTGAAGTTTAAACTTATTAAACGAATAGCACATAAATTAATGTAATAAATTATACATAAACATGGTGCAGTTAATGATAATCGTTGTAAAAATAAAAATAAAAATTTACTTAATTAAAGTTGCATTTATATAATTTCTTAGTGATTTTTTTAAGAGAATTAATAATTTCTAATAAGTGTCTGTGTTCCGTACCATTTCAGTTTGTTTATAATTAATAAAGGATTTGTCCATCCTAAGACAAGGTACGGTTGATTATTTTTAATTTAATTTTATAATATATATATATATATATATATATATATATATATATAAAAGCAAGAAATAATATTTAATGGTCCCTTTTTTTAAAGTTTTATAAAATATTTATTTTTTGATAAATATTTTTCATTGTGAAATTAAAGAAAATTCTTCTAACTTTAGAGAGAGATATATATTATTTCTTTTATAGACTTTCTTATAGAGGTAGTTACTTTTTTCACTTTATAGACCAGATATTTGAATATAATTGCTTTTTAATATTATTTTTATTTTGTAATTTATTATTTTATTTCAGGTTTTTTCTCGTTTACTATTTTTATATTTTAAATAATAATTAATTTTTGATAAATATTTTTCATTGTAAAATAAAGACATTTCTTTTAATTTAAGAGAGATATGTTACTTTTTACGGACTTTAATATTAGGAGAATTGTTTCTTTCTCTTTATAAATCAGATATTTGAATATAATTTATTTCTCATTCATTATTTTTATTTTAAAAAAGTTACATTGCAAATTTTTGTTAGCATGTCTTTTAAACTTGATTATAAATAATATATTATGAAATAGTTATTACATTTTAAAAATGTAGTAAGCTAAATTATGAACAGTACACAATTTGAAATATGCTAACAAATTTACTCTAAATAATTTATATTTTTCCTGATTTTTAGACATTATATATAACAATTTAACATGCAGTCGATTAGGTGCATGAGTCCCAATTGGAGAAACAAATTGTATAGTTGAATTACATTAAAGATTTATTATGATTATTTAAATGCATGGAAAACATAATTTTTAATAAAAGATAAGCTTATTTTAATGACATAATTATTTAGATAAGCTAAATAGACATTGATATTTATACACGTCAAGCATTGATTTTTTTTTTAATGAAAATTAAACTTATAATTATGATATATGCGAAACTGATGACCTAAATGTGTGATTTTGATTTTTTTTTTCTTAGAATATTTAGTTTATTTTAAATTTATATATAATTTCTCTTTATGATTTAAAAAGTTATTGAAGTTACAAAACCTTTTCAAATGAAATTTTATATATAACAAATATTGGTTCCGTCATCAATAAGCAAAGTAAATTCATGAGATCACTTTATTACTGAAGCAAAAAACAAAAAACACATGGTATTACATTCATTTAATTTTATGAATGTTTTCTGATTTATCAATTAATTGTCAAAATCAAATAGTTGTTCCTATTTATACTTAACATAAAAATAATCCAACATTTTCTTCATAATTAAATATTACTTAATTATTGATAAATTAGACATCATCTTTAAAAACATATTAATAAATACATTGACCTGAATTTTTATTAAATAAATTGAACATTTAATAAAAAAAAAAGTTAATAGGTATTTCAGACAATCCATATTTTGGTGTATGAACTAATTTTGCAGAAGGAGTCGTGGAGCCTGGAAGAAGACATGATTGTGATGAAAGCCCACCAGGAATTTGGCAACAGGTGGTCAGAGATTGCTAAGAGGCTACCTGGAAGGACTGAAAATAGTATTAAGAATCATTGGAATGGAACCAAGAGACGCCAGAGTTGCAGGAGCTACAACGGGAGTAAGAAAAACCCTTACGAAGGATCAATGCTCCGTGCTTACGTTAAAAGGGTCACTGCTATGGAAGAATCTACAAAAGTGTCGAAGAAAGCCACAAGCAAAAAGAATTTGTTGAGGTTTGATCCATGTACAAACGAAATGTTTATTGGAAATAGCAGCAACTACGCGCCATTGCAAGTTAAAAATAATAATATTAGGGTTTCATATGGTGCAATTGGAACGAATGCAATCAACGGGGGAATGAATCCGATAAGTACAAAATACTGA