Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00309 LG1 5623093 5625899 PREDICTED: transcription factor RF2b-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   organonitrogen compound catabolic process, carboxylic acid metabolic process, developmental growth, organonitrogen compound catabolic process, cell differentiation, regulation of growth, carboxylic acid metabolic process, root morphogenesis, root morphogenesis, tissue development
Cellular Component   is active in   nucleus
Cellular Component   located in   cytoplasm, nucleus, nucleus, nucleoplasm, cytoplasm, perinuclear region of cytoplasm, nucleoplasm
Molecular Function   enables   protein binding, protein binding, protein binding, protein self-association, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, chromatin DNA binding, chromatin DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/A 5623142 3_prime_UTR_variant
G/A 5623144 3_prime_UTR_variant
A/G 5623220 3_prime_UTR_variant
T/C 5623307 3_prime_UTR_variant
A/T 5623341 3_prime_UTR_variant
A/G 5623349 3_prime_UTR_variant
T/G 5623421 3_prime_UTR_variant
G/A 5623603 synonymous_variant p.Phe363Phe
G/T 5623733 missense_variant p.Pro320His
C/T 5623777 synonymous_variant p.Pro305Pro
G/A 5623916 intron_variant
T/A 5624213 intron_variant
A/C 5624229 intron_variant
T/C 5624235 intron_variant
A/C 5624310 intron_variant
G/T 5624368 intron_variant
G/A 5624412 intron_variant
A/C 5624520 intron_variant
A/C 5624555 intron_variant
A/T 5624771 intron_variant
A/C 5624776 intron_variant
G/T 5624777 intron_variant
A/T 5624782 intron_variant
A/G 5625029 intron_variant
C/A 5625033 intron_variant
A/G 5625149 intron_variant
A/G 5625168 intron_variant
G/A 5625182 intron_variant
T/C 5625207 intron_variant
A/C 5625252 intron_variant
A/T 5625357 synonymous_variant p.Pro181Pro
C/T 5625389 missense_variant p.Ala171Thr
T/C 5625396 synonymous_variant p.Ser168Ser
C/G 5625531 synonymous_variant p.Thr123Thr
T/C 5625576 synonymous_variant p.Thr108Thr
T/C 5625597 synonymous_variant p.Pro101Pro
C/G 5625702 synonymous_variant p.Ser66Ser
G/A 5625769 missense_variant p.Ala44Val
T/C 5625805 missense_variant p.Asn32Ser
T/C 5625807 synonymous_variant p.Ser31Ser
C/A 5625858 synonymous_variant p.Leu14Leu
C/G 5625893 missense_variant p.Glu3Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00309.1
MLELERKKEESSILLGDKTISFWEQMQDPSSNPNSNSNPNPHNANAASQLPRPPPSTAVPAAGASSSSIFARSGGAHHRRAHSEVSFRLPDDMMDLSPSDPFAGGSSTASMEEIGSEDDLFSTYIDVDKLGGANGSGGAGNGADPTGEREKSPARARHRHSNSVDGSSSFAEIMEAKKAMPPDKLAELWTVDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKVATGEMMSHTESFNLGMHHMPFTGSTFSPILSQSGPSGHQNIQLSSFGHSPSTMPTHQLHQTSSHTLSEILQNDQLGRFQGLDISSKGSTLVKSEGPSLSASESSTTF*


CDS Sequence:
>Vu_00309.1
ATGTTAGAACTGGAGAGAAAGAAGGAAGAGAGTTCAATTCTGTTGGGTGACAAAACTATTAGCTTTTGGGAACAGATGCAAGATCCATCTTCAAACCCTAATTCCAATTCCAATCCCAATCCTCACAATGCCAATGCTGCATCTCAGCTACCACGACCGCCGCCGTCAACAGCGGTCCCCGCCGCCGGCGCCTCCTCGTCCTCGATTTTCGCACGCTCCGGCGGGGCTCACCACCGGCGAGCTCACTCGGAGGTGAGTTTCCGGCTTCCGGACGACATGATGGACCTGTCGCCGTCGGATCCATTTGCCGGCGGGTCATCTACAGCGAGTATGGAGGAGATCGGATCCGAGGACGACTTGTTCTCGACGTACATTGACGTGGACAAGCTGGGAGGTGCAAACGGGTCGGGCGGTGCGGGAAACGGAGCGGATCCGACCGGAGAACGGGAGAAAAGTCCGGCGAGGGCGCGGCACCGGCACAGTAATTCCGTCGATGGCTCTTCATCTTTTGCCGAAATTATGGAAGCTAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAGTTGATCCCAAGCGTGCTAAGAGAATACTTGCAAATCGGCAATCCGCTGCTCGATCTAAAGAGAGAAAAGCTCGCTATATACAAGAACTCGAGCGCAAGGTTCAAACACTTCAGACCGAAGCCACAACCCTTTCTGCTCAGTTGACATTATACCAGAGGGACACAACAGGCCTGAGTACTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAGCAAGCACAGCTTCGTGATGCTCTTAATGAAGCATTGAAAAAGGAAGTTGAGAGACTTAAAGTTGCTACTGGTGAGATGATGAGCCACACTGAATCCTTTAATTTGGGAATGCACCATATGCCGTTTACGGGATCAACTTTCAGTCCAATCCTGTCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGTCATCATTTGGTCACTCCCCATCAACAATGCCAACTCATCAACTGCATCAAACTAGTTCTCATACACTATCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGCCTTGACATTAGTAGCAAAGGATCAACTCTGGTGAAGTCTGAAGGCCCCTCACTGTCTGCAAGTGAGAGTAGCACTACCTTTTGA


Promoter Sequence:
>Vu_00309::LG1:5625899-5627899(-)
ATAGGAAACCCCCAAATTCTCGGCTAAATAAACAAATTTCATAAATTTCAAGTCATCCCAATATACCAATTTAATAAATTTCATTGTCAACATATTTTATGCAACTTAACCATTCAATTTAAAGAAACAATGCAATTCCAAGTTCAAAAACAGAAATTCATTACACAATCAACAATTAAAAAAAATTAAATTTAACCTAAATAGTTAAAATTAGTTTTCCTCACCTTAGCCAAATACCTTTCTTCCCAAACAAGGATTTTCTAGAACACACAAACACACACGATTCCTTAAACAAACAACAAAAATCTGATTAGCGTTCTAAGCCTACTATTAAGATAGAAAACAACAAAAAATCACAAAAAATAATCTTAAATCACATTCATGATTTTAGAGCTATTTGCAAATGTAAGGTTTCAAACATAAAAAAAACAAAAGGGTTATTCTATTTGACATTTGATCAAATGGTTTTATAAGATTCCTTACAAAAGAATCACAATTATAATTTTTAATTGTTAAAAAGATAAAAAAAAACGAGTAAGATAAGCTAAAGTGAAATTAGAAAAAATTTAAAAAAATTGGTTGTAAAGAAATGATGGTTTTAGAAAAAAAAAACTTTAATTATTGAAACCTATGTATGATGTCCTTTGATACTAAAAAAAACTGTAGTATTTTATTTTTAATAAAACCACCAATACTGTTATATCCACGCTTATTGATATGCAAAATAATAATATTAAATTTATTAGTTAACTTTAATACATGTTCTTTTCGTGGATATATTAAATAAATATTAGACAATAGTAAATTTAACCTAAATGTTAAAACTATTAACATTTCAAAACATTTTTTTATTCTACATACTTTAACTTCTTCACCTACACAGTTAAATATGTCTAAAAATACCTTTTAAATGGTCAAAACATTAATTCACACAGTGTATAGTGGTGACATATCACTGGACCTTTTCAACCGTGTCACATGATTGTGCATGTGCTGTTACGTGATGTTTGAAAATGATGTGCATAAATTATAATTATATATATATATATATATATATATATATATATATATATATAAAATTCTATATAATACAAATTAAATAGGACTTTTTGGGCAACAACGAATTAAATATCATTTGGGCCCTCAACAACACATACCATAATATATATAAATATCTATAATTTAATTCAAATAGCTTTCCATTGAACAAGGCGGGGATCACAAGGTACTTTATAAAATTATAAAGTAAAATAATAATATTCTATTTCTTCAACAATGATAGAAAGAGTTTAATTAAAACTTCCACAAAAATCATTATTTATAATTTAAAGTAATTACTCCCTTTGCTATTTATTATAGAATACATCTTTTTCAGGATTTTTTTATCCTTTTCATAAAATACTTTATAATGATAATAATAACTTAAAACCATCAATAATAAAAAATTAATCTGATGCATTCATGATATTCTTTAAAAATTCAACTAAATTAATTATTTTATGAATGTGTTTAATTATTATATTGAAAGTGCCCTATCTTAAAATTCAGATGAACGCTTTTTTAGAATAATTCTAGTTGGATTGAATATAATAATTATACATAATTAATGCAATTATTAAAAACTATTTCAAAGTCAAAGTCATCATTTTATTCGAATGGCTTAGTATAATGTTTTTTTATACATGTATCACAAATCTTAATTGTATACTGTTACAATTTTATTTTTAATAATCATGAGCTGGAAAAAAAATGTTATGTAGTATAAATACTCCCCTTCAATATTTTAATGGTGATTTTTTTTTTTGTTTATGTTTAATAATATCATTCAGTCTAAAGAATATGTAAAAAAATCAAAATAGCATATAACAATGTAAAAGTAACGTAAAACGAATATATGGATACATTATAGTTAATTTGATTAAAAAGCTCTTAACATTATATATTTATTATTACTCTTATTATTTAAATATATAGTTTTTATTTACTCGTGTCTATCGGAA


Gene Sequence:
>Vu_00309(-)
ATGTTAGAACTGGAGAGAAAGAAGGAAGAGAGTTCAATTCTGTTGGGTGACAAAACTATTAGCTTTTGGGAACAGATGCAAGATCCATCTTCAAACCCTAATTCCAATTCCAATCCCAATCCTCACAATGCCAATGCTGCATCTCAGCTACCACGACCGCCGCCGTCAACAGCGGTCCCCGCCGCCGGCGCCTCCTCGTCCTCGATTTTCGCACGCTCCGGCGGGGCTCACCACCGGCGAGCTCACTCGGAGGTGAGTTTCCGGCTTCCGGACGACATGATGGACCTGTCGCCGTCGGATCCATTTGCCGGCGGGTCATCTACAGCGAGTATGGAGGAGATCGGATCCGAGGACGACTTGTTCTCGACGTACATTGACGTGGACAAGCTGGGAGGTGCAAACGGGTCGGGCGGTGCGGGAAACGGAGCGGATCCGACCGGAGAACGGGAGAAAAGTCCGGCGAGGGCGCGGCACCGGCACAGTAATTCCGTCGATGGCTCTTCATCTTTTGCCGAAATTATGGAAGCTAAGAAGGCTATGCCTCCTGATAAGTTAGCTGAGCTATGGACAGTTGATCCCAAGCGTGCTAAGAGGTTCTCAACTTCGATCTCAGAAATGCTTCTTTTTTGGGTTCTAATGATTAGACTTCGATGTGACGTGTGAATTAGTAAACAGTAGGGTCTTATCTGTTTAAGGTTTTACTTTAGTTGATTTTCCCGTTTCAAATTTAATTGGTTTATGAAGTTAAATTGAGGCTTGTTGCTGAAGGCCGAAACTGCTCGACCTCTCTGTTGTGATATTTCGATGATGCTGTGTGAATTGATAAGTTTTAATTTATGAATAATTAGAGGCCAGGGTTTTTAATTGCAGTTGTCGTCATTGTTTCACTGCAATCCATGTCATTTGCTAGAAAAGTCAGGCATATGTAGCCTTAAATTGCTTTGCCACTTGGTTGGAGTGTGTAAAAGAACCTTGTTGTGGCAAAAGTTACGGTCATAATTTGGTAAACAGAATTGTTGTAGTGGCTGAAATTGAGGATGTGAATGCATTTTTAAAACCTTGTTACAGACCATGAAGAATCATTTAAATGCCGGGAGCGAAGGGTTTATGTTAAAACTAGTGCTCACTTGTTTTATTAAGTGATTGCTTTGAATTTGATTCTGTATATTATTATTCTCATTATTTTATTGTTTTTGTGAATAGAATACTTGCAAATCGGCAATCCGCTGCTCGATCTAAAGAGAGAAAAGCTCGCTATATACAAGAACTCGAGCGCAAGGTTCAAACACTTCAGACCGAAGCCACAACCCTTTCTGCTCAGTTGACATTATACCAGGTTTGTGCTTGTCTAAAATTTAAAGTGCTTTTAGACGTTCCATTTTACGGAGTAGACTCTGATTTGTTAAGGGATTTCCTGATGCTGCTTGGTGCAATTTCAACTGTATCATGACACATTTACATTTATTCCAGAAGTATTGTAAAATTTGCTTCAACTTAAATTTAGTATACTAATCAAGTTGTCTTCTGTATGCCGCATAGGATTATATTTTTATAATTTGTGTCTGTTCTTGTTACCTTCAAATATTTGCTTAACCCGTAGATGTCATTGTTGCGTTTGTATTTCTCTTCTGGAATTCCTCCTTTTATGTGGAATCTAGAATTGTATAGAATTTTACATAATGTGATATGTGGGTAATGTAATGATGCGTTGTTTTTGAGGATTTACTGGGATGACTTATTTTGTATGCGTATACAAACCAATTGTGGCCAAATAGAAATTACTCAAATACTTAATGATTCTTTATAGAGGGACACAACAGGCCTGAGTACTGAAAATACCGAGCTTAAGCTCCGTCTGCAAGCCATGGAGCAGCAAGCACAGCTTCGTGATGGTAACCATCATTATATTCTTAATATACATAAAAACCACGTACTTTACTAATCTTTTTAATGTAACTTTTAGAAGTGTGTTATTAAGATCAGCTAATTGTACTGAAATTAGTTTCTGATATGTTGTAGCTCTTAATGAAGCATTGAAAAAGGAAGTTGAGAGACTTAAAGTTGCTACTGGTGAGATGATGAGCCACACTGAATCCTTTAATTTGGGAATGCACCATATGCCGTTTACGGGATCAACTTTCAGTCCAATCCTGTCACAATCAGGTCCTTCTGGTCACCAGAACATCCAGTTGTCATCATTTGGTCACTCCCCATCAACAATGCCAACTCATCAACTGCATCAAACTAGTTCTCATACACTATCAGAAATATTGCAAAATGACCAGCTTGGTCGTTTCCAGGGCCTTGACATTAGTAGCAAAGGATCAACTCTGGTGAAGTCTGAAGGCCCCTCACTGTCTGCAAGTGAGAGTAGCACTACCTTTTGAATTGACAGAAATCACTTGACCTGCTGACTTATCCATTTCATTCATTGTTCGTAGTGTTGACGTCTAGTCAACTAATGAAGATACCTTATTTAATCATTCAGATTTGAGGATTAATTCTTAACTATTTATTCTTAGGGATGCTCACCAAAAAGGGGAAGCACCCTTGGGGTTTTGTTGTGAAGTTCACACAATCTTGTTCAGCAAGACATTTGGTGTTTCTGGGCGCGGGAATATCGGGAATGAAAGGTCATTCCCATTGTATCTTTGTATGTTGGGATATGCATGGATCCTCTGATCTTTTGTATCATCGTTTACGTGATAACATGTACACTGTGTGATTTATGTTGTGTTTCACTTCATTAATAGTCCTAGATGGACTCGTTTTTTTATAAATTTAGGTACTTAGTTTTTGGTTTATTC