Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_00322	LG1	5850332	5851174	PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, leaf development, regulation of transcription, DNA-templated, leaf development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
Pathway	B 09159 Environmental adaptation	C 04626 Plant-pathogen interaction [PATH:ko04626]

SNP	Position	Effect	Amino acid change
G/T	5850578	synonymous_variant	p.Leu199Leu
T/C	5851110	missense_variant	p.Asp22Gly
C/T,*	5851138	missense_variant	p.Asp13Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_00322.1

MSVHSTLNLHPIDPATPNSNFDDNPPCKTKTKTQRRLLRIIITDHDATDSDSDDEQRQNNPTTRKVKREITQISMHLPLPDNSLSSCSYSSGLASASSCSSEQVSKCRRPKKPPPPSEAARRRSKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLTRPPPVESPFAAIDSLSTDGGASYSDLVASPTSVLTYDCDSTPFDSYHYGDVDALGFHIDAPLSLADVDVSLTCHPYKEEEEAFDEFDLDEFMKWPY*

CDS Sequence:
>Vu_00322.1

ATGTCCGTACACTCAACACTGAACCTCCACCCCATCGACCCCGCCACTCCAAATTCCAATTTTGATGATAACCCACCATGCAAAACCAAGACCAAAACCCAAAGGAGGCTCCTTCGGATCATAATCACCGACCACGACGCCACTGATTCTGACTCCGACGACGAACAACGACAAAACAATCCAACAACGAGGAAAGTGAAGAGAGAAATTACCCAAATCAGCATGCACCTTCCTCTCCCGGACAACTCCCTTTCTTCTTGTTCGTATTCTTCTGGTTTAGCTTCTGCTTCCTCTTGTTCCTCCGAACAAGTCTCAAAGTGCAGAAGGCCCAAAAAACCTCCACCACCCTCCGAAGCGGCCCGCCGCCGCAGCAAGTTCCGCGGCGTCCGTCAGCGGCCGTGGGGTCGATGGGCCGCCGAGATCCGCGACCCGACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCACAGAGTACGACAAAGCCGCCGTCAAACTCAAGGGTCCCAACGCCGTCACCAATTTCCCCCTCACAAGGCCGCCCCCGGTGGAGTCTCCTTTCGCCGCCATCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGACCTGGTGGCCTCGCCGACGTCCGTTTTGACCTACGACTGCGACTCGACGCCGTTCGACAGTTACCATTACGGCGACGTGGACGCGCTCGGGTTCCACATCGACGCGCCGTTAAGTCTGGCGGACGTTGACGTCTCGCTTACGTGTCATCCCTATAAGGAGGAGGAAGAGGCGTTCGATGAATTCGATCTCGACGAGTTCATGAAGTGGCCTTACTAA

Promoter Sequence:
>Vu_00322::LG1:5851174-5853174(-)

TCTTTTTATCACATATAATACATGTAATTCTTTTTCTTCTTTCTAATTTTCTCCAGGTATGAATTTGCATTATTTTAGTGTGCATGGATGGTTTTCAACGAAATCGTTTAAACAGTAAGAGCTTCTCCAATAGCAGATTCCTAGTTGGAAATCCAATTGCGGTAAGTGTATTGCGGTTTGAGGTAAAAAATAGGAAAAAGAAAGTTTTTCGGGCACCACACAAATTCGGTTTGGTTGGTGAAATACAATCCGTGCACGATGATATTTCGACCTTTTTGTTGCAGATAACTAATGCTTACAGCGGGGCAGTGTCCTGAAACCTCTGCCCAGACAAATGCTGCAGAAGTTTGTACTGAAAAGACTATGTTACAGCCTCATCATGAGTTGGACTAACCCAGCCCAATACCGTCCTTGCTAAATCATAATAACTTTTCATCAAACATTGTTTGGAGAGGTGAAACAGAAGAAATACGGTCAAAACAACACATAATTGATTTATGGATTTAACTTAATCAATTGCATGATTAAACTCTTGTCGAGATTTTTAAGAAACACAATCATCTGTGTATGTTAGTTTATGTTAGCGAAGAGGTTCGACCTTTGGTGTTTTAGTTGGATGACGGTCGTGGGTGATTGGACCGCGTTGGCAAAAACAAGGAAGGCACAGAGATTGACACCAAATTCAACGCTTGGGAAAAAGTTTCCAAGTCGGGGCTCGTTAATTGCGTTTGGCGTGGTGCGAGGGAGCTAAGCTTGACCAACGTGTAAAGTTGGGAGAGTTTTGGTTAGACCCTCTTTCTCTAACCCCTTCACTGTATATGAAACCGTATATTGGGGTGGTGAAAAAGGTTGAAAAGTCACAGATAAAGTTCACATGAGGCAGCATCACACATGCCCCATCAGGAAGCACGCCCTTGTGCACATAAGGCCCGCTGGAAGTAAAAGAACAAAATTAAAAATTAGGTAGGGTTTAAAAGGAGACGATGATGAATTTTGAAGAGTAAAAAAGGTGAAAGGGTTAATTGGGGGAGTGGGAGTAGGAATATGTTAGTGGGATTTTGATGTTGTATAAGAGTAAGAGTGGGATTTTAGTTGAGGAAACGGACATCATAGAAGGAAGGGAAACATGGGTTGGGACACGTCATCACTGGCAGCTGGAACATGGAACTTATGATTTTTCTACTCCCCGACAAGGACACATTCACACACACTCGCAGGTCACCACCCTCCACTCACACACTCACACTCCTTACCTCACTCCAATGACTCCAACTCAATTTCCCTCTTCAATACAAAACCCCACCCTCACGAGAAAAATGTTTTTCACACCCTAACCCTTCCACAAACACTACTACCCCGTGCACTATAAATACCCTTTACCCTATACCCTTTCATCTCGTTTTCTTCTCCGTTTTCTCCATCCTTCCACTCTCTCTTCGCTCCGGTTACCCTAAACACATCTTTCCTCTCCCTTCCCGCCAAAACCTCCCCTCTCATCACCACCAAGCCTTCAATTCTTGAACCTTCTTTTTCACTATCTTCTTCACTCACTCACTCACTCACTCACTCACGCTTACCCCGTGTGTGTGTGTGTTAGATCCTTCCACCAAAAGCGGAGTGAGATTTCATTTGAAGCGTATCCAAGGTTGGCCATATTCTCTTCTCTCTCTCTCTTGGAATATATCTCCAGAAGAAAAGCAAAAGTTTGTTAGTTGTTACCCATAAACATCTCGGTTTCTTTCTGCATCACCAACACCAAAAGTTCTCAAACGTCTCAATTCCCCCAGCATATACATCTACTTGTCCACTTTTCCCCCATACCCTCTAAATTCTTTCGCCCTTTAAACCCACCCTTCATGCACTCCACCACCACACCACAACTTTCCCTCTTCCACCTCTTACTCTCACACTCACTCAAAAATAAACAACCTTGACACAAAAACACACTCCTCACCCTTCAATTCTTCACTTTCTTCCATCTCTCTCTCAATCCTTTAGAC

Gene Sequence:

>Vu_00322(-)