Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00362 LG1 6419785 6420294 ethylene-responsive transcription factor RAP2-3-like isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, response to ethylene, response to jasmonic acid, ethylene-activated signaling pathway, response to jasmonic acid, heat acclimation, positive regulation of transcription, DNA-templated, response to other organism, regulation of transcription, DNA-templated, response to cytokinin, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to cytokinin, response to ethylene, heat acclimation, response to ethylene, response to ethylene, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway, response to other organism, cell death, ethylene-activated signaling pathway, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, cytoplasm, nucleus, plasma membrane, nucleus
Molecular Function   enables   DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, protein binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 6420036 missense_variant p.Thr63Ile
C/G 6420208 missense_variant p.Gln29His
G/A 6420272 missense_variant p.Ser8Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00362.1
MCGGFVISDFIELHIKNAPESTTHHLFSQLHTFNATSSSTLNKVEETCEKVKNSRVIAEKGDALVRKNTHKGIRRRSWGKWAVEIRDPRKGVRMWLGTFAIAEEAPRAYAAVAVRIRRDKARLNFLEHHRCPPNMNNNPCLSPELT*


CDS Sequence:
>Vu_00362.1
ATGTGTGGTGGTTTTGTCATCTCTGATTTCATAGAACTTCATATCAAGAATGCTCCAGAATCCACCACCCATCACCTCTTCTCTCAGCTCCACACTTTCAATGCCACCTCTTCTTCCACACTCAACAAAGTGGAGGAGACATGTGAGAAGGTCAAGAATAGCAGAGTAATTGCAGAGAAGGGTGATGCACTAGTACGGAAGAATACTCACAAAGGAATCAGGCGAAGGTCGTGGGGCAAGTGGGCTGTGGAAATAAGGGATCCACGCAAGGGCGTTCGCATGTGGCTTGGCACCTTCGCCATTGCAGAAGAAGCCCCACGCGCCTACGCTGCCGTCGCCGTACGCATCCGTAGAGATAAGGCTAGGCTCAACTTCCTCGAGCATCACCGCTGCCCACCCAACATGAACAACAACCCATGCCTCAGCCCCGAGTTGACTTAA


Promoter Sequence:
>Vu_00362::LG1:6420294-6422294(-)
TCAATATGTGAGAACATGGTCTAAACTCTCTTTTTTTCTTTCTTCTTTTCTTTTTTTATTTTCCTTTCTTTCATGTTTTTCCCTGCATTAGATTTGAGAGCAATTAAGATGGTTTTTCTCATTAAATTAATTTGTTTGGTTCTAAATGGTTAGAAATTATGAATTATGAATATGTATTTCATAGTATTATTATTCAAATGGTTATATATTTGAAATGATATATAATGAATGAATGTATGATATTTTTGACAAACAACTGTATTAAATAGTTTATATAGGATTTGACATTATCGTTGATTTGGATGAAATGTTATTCTATTAATGATAAATGGTTTAATATAGTTAGCTGTCAAGATGTCATACATTAATTCATTTATAAAATGTAGGAATGAAATTAATATAAAATTTATGAGAAATGTAATTTCGCTTGAAAGTTTATAAATAAAAATATAATTAACTATTCAAAATGTTAAGTACAAGAAGTTATCATTCGAGAGAGTTATATCTAATTTAATGATAATGTAAATCATATAAATTAAAATATCATAGTGAGAAGTTGAAGACAAGTTCATATATTAATGTACAATTTTGTTTGAAGGTTTATAAATTAAAACATCTATAAAGGTTTATTAACCTTAAATACTTAAAATGAGTCAAATGTTAACATGTTTAATATAAATGTTTTCGAAAAGTATTCATTTAATATCTCTAATTTGTGTATATTATAATAGACTGATGTATAATGCATGACAATAGTTTAAATAAAGTTTCTTTGATTTTGAAATGAATACAATTATAATGTATATTGATTCTAATGCTAAATAACCTACTTTGATAAGTTTTTTATTTTTTTTTGTAGTGAGTATATTTGCTAGGTGGAAAAGAATGTTATAGATTGAAATAGAAAAGCTTAGATAGATTTGGACACACATTCTTTTTTATTTTGTAAACCATATTATTGAATAATTATACATTTAGCTTAGAATGTAAATATTAGACAATTAATAAATTTAATTCCTGTGAAGTAAACAGGTTATATTTATGATAACAAAGTTGATAATATCTTAAATAGACCTCAGGAAAAATGATATTTTCAATCTAATTAAAGAAGTTAGTTAAAAATTTCAATATGATTTTCAATTCTATTTCCATTTATGTGTTTCATCCTCTAATTCTATATTTAATTTGTCCCACATTGCTAATCATAAAGATGATGACTAGGACTCTTTGACAACAAGTGTCATTATGACACAACATTACAGGGAAACTCCACTTGGAGATTGTCAATGTCCATTCAAACTCTACAGTAACATACTTCCTTGAGTTGGAGGCTTTAATAAAACATAATCATTATTGGATTGACCAGTGGGTTAATTATATAAAGAGGATATATTAGACCTTCAAGATAGGAAGTTAAGTACGTCATCTATTAATTAATTAATTAAGTTGAATTTTAGTAGTTGATAATGAGAACAATGATGGAGGACGAAAATGGAATTTCAACACCAGATTTTTCAAAAATAATTTCCTTAACATGTTATATATAATTAATATATAGCTTAGATAGAAAAAACTCCTGTATAACTGAATGCACTTAAGTTTAAACAGCTAGTAAAGATGTGCATGTTTGAGCCATAGTCATAAATAAATAAATATTAATTATTTCGAAGGTCCTTAATTGTACATATTCGTGTTAATTAGATTCTTGTATTTTTAAAGAGTTCAATTAAATCCATTTTATGTAAAATTGAGTCAATTATGACATTGTCATTAAATTTACTGTACATAATTTGTATGTTGCTGACTGCACAATTTTTAATGATGTGCAGGTTACGTGGAATCAACGTCTTGCTGCCAACCCGCCACCAGGAACCAACCCCAAATTAGGTCGCGATGTCCTTTATAACCAACCCAGAAACGCGACGCTTCCTCCATTGACACACCATCACGAAGCTTCCTCTCATTCAATTCATTTTTCTTACACACTCTCTCAAATCAAA


Gene Sequence:
>Vu_00362(-)
ATGTGTGGTGGTTTTGTCATCTCTGATTTCATAGAACTTCATATCAAGAATGCTCCAGAATCCACCACCCATCACCTCTTCTCTCAGCTCCACACTTTCAATGCCACCTCTTCTTCCACACTCAACAAAGGTAACACCTTTTTCTTCTCACTAATTATAATTTTTGGCATTATCATGATTGTTGTTGACTTTGATGTAGTGGAGGAGACATGTGAGAAGGTCAAGAATAGCAGAGTAATTGCAGAGAAGGGTGATGCACTAGTACGGAAGAATACTCACAAAGGAATCAGGCGAAGGTCGTGGGGCAAGTGGGCTGTGGAAATAAGGGATCCACGCAAGGGCGTTCGCATGTGGCTTGGCACCTTCGCCATTGCAGAAGAAGCCCCACGCGCCTACGCTGCCGTCGCCGTACGCATCCGTAGAGATAAGGCTAGGCTCAACTTCCTCGAGCATCACCGCTGCCCACCCAACATGAACAACAACCCATGCCTCAGCCCCGAGTTGACTTAA