Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00387 LG1 6739159 6741547 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   carpel development, adaxial/abaxial axis specification, abaxial cell fate specification, abaxial cell fate specification, plant organ morphogenesis, radial pattern formation, plant ovule development, xylem and phloem pattern formation, carpel development, carpel development, regulation of transcription, DNA-templated, polarity specification of adaxial/abaxial axis, regulation of transcription, DNA-templated, plant ovule development, plant organ morphogenesis, plant ovule development, regulation of transcription, DNA-templated, plant ovule development, carpel development, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
A/C 6739305 synonymous_variant p.Ser49Ser
A/C 6739381 missense_variant p.Thr75Pro
T/A 6739687 missense_variant p.Tyr177Asn
T/A 6739720 missense_variant p.Ser188Thr
G/A 6739887 synonymous_variant p.Leu243Leu
G/A 6740107 intron_variant
C/A 6740110 intron_variant
T/C 6740146 intron_variant
C/A 6740277 intron_variant
A/T 6740283 intron_variant
A/T 6740286 intron_variant
A/T 6740293 intron_variant
T/C 6740296 intron_variant
A/G 6740305 intron_variant
C/G 6740313 intron_variant
G/A 6740358 stop_retained_variant p.Ter306Ter
T/A 6740870 intron_variant
G/A 6740871 intron_variant
C/T 6740881 intron_variant
C/G 6740934 splice_region_variant&intron_variant
C/A 6741012 intron_variant
A/C 6741013 intron_variant
G/T 6741251 intron_variant
G/A 6741295 intron_variant
T/G 6741317 intron_variant
A/C 6741322 intron_variant
G/T 6741329 intron_variant
C/A 6741451 missense_variant p.Gln365Lys
A/G 6741495 synonymous_variant p.Gly379Gly
A/T 6741498 synonymous_variant p.Leu380Leu
A/C 6741547 splice_region_variant&synonymous_variant p.???397???

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00387.1
MTLEGIFIEPTSTTAPDLSLHISPPSISSSLISNTNNIINYEPQPSFLSRTVSQAHTELSLGRNFTSARETPPPTPTPTPHNPYYPTQTQTQTHFHHLLHSSSSSTTTTSNIPTSVPTSANTPLNHINYGVSLLDVSSSDGLRPIKGIPVYHNRSFPFVAMDHARDNKDPHTKMCLYHHMPSYPSLSSSCSSLCSTAAPSSSPSPYFVDPMSFLNNASTVGCRTATATRFNGFSGDAFKSHPLHQYGVGSSEASSGFMRSRFLSKLPNKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGHSDGSGEDDLSPIGSTADRGSLRQFPSHRGRPDWVAQQDMDYSSTTTLWSNSSRYNT*


CDS Sequence:
>Vu_00387.1
ATGACCTTGGAGGGGATTTTCATTGAGCCTACTTCAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCCCCAAGCATCTCCTCTTCCTTAATTTCCAATACCAACAACATCATCAATTATGAACCCCAACCTAGTTTCCTTTCAAGGACTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAAATTTCACTTCGGCAAGGGAAACACCACCACCAACACCAACTCCAACACCACACAACCCTTATTATCCAACCCAAACCCAAACCCAAACCCATTTCCATCATCTTCTCCACAGCAGCAGCAGCAGCACTACTACTACTAGTAATATTCCAACAAGTGTTCCTACAAGTGCCAACACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCATCAGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCGTTCCCTTTTGTGGCCATGGACCATGCTAGAGACAACAAGGATCCTCATACCAAGATGTGCTTGTATCATCACATGCCTTCTTACCCATCTCTCTCTTCCTCGTGTTCCTCTCTGTGCTCCACAGCCGCTCCTTCTTCTTCGCCTTCGCCTTACTTCGTGGATCCCATGTCCTTCTTGAACAACGCTTCCACCGTGGGGTGTAGGACAGCCACTGCCACAAGGTTTAATGGGTTTTCCGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTAGGCTCTTCAGAAGCCTCTTCGGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCGGTGGAGCTTCTCGGAGGCCATGAAAGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTAGCTCATGTGAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGCCATTCAGATGGGTCTGGAGAGGATGACTTATCTCCTATTGGCAGCACCGCCGATCGGGGCAGTCTCCGGCAATTTCCCAGCCACAGAGGGCGGCCGGATTGGGTGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTTTGGAGTAATTCTTCAAGGTACAACACTTAA


Promoter Sequence:
>Vu_00387::LG1:6737159-6739159(+)
ACAGTGCCTCTGAATTAGTGTTTTCCTTTGGTAACATTGGAGTTGGTGGCAGTGGGACAATACACTAACTATAAACCTTCATTAATTAACTGCTTGATTAAAAAAGCTGAGACTCCAAGACCAAGCTTAGAGCATTGTTTGTCATCTACGGTGTCAGCATTTAAAGATAGGGGTTACTTCCCAATATCATACTTATGGATTCCTTTTCTTTTTTATCATAAAATTACCATTTTCTTCGATTTAGCCTAGGGTTTTGGAAACCCTAACCCACTGGTCAATGCTAAAGGATTTTCAATCATTCCAATATAGTGTCAAATCCTCATTCAATTTTCATTTTTTAATTCTCTAAATGTTTCTCACTTTCTAAACAAAACAAATGTATTTCCATTTTGCTCAATAATTATAATTATTCAAAACAGTTAACAAAACCTTTATGTTTTAAAACATTAAATATGTGTACTTTTATTTATTTAATGACCAGAGAATTATTAAGAAAATATAAATACGTAACGAAACTCTTTATTTGTAAGAGAATGAATGTATTTGGAATAAGAATTATTATCGTTTAGAATGATTATAAATAGGTTGTTTATGGATGAGAATGTAGGTGTTAAGTAAAAGTGAAAGGTATAGGATGAGCAGTAAAAGTTTTAAAATGGCCGAAATATTGAAATTTGTAAGACGATAACTTGATTAGCTAAATGTAATGAATGCTAATTTAATTTGATTGATTACCATGTGACCTGGTTAGAAAAAATGAAAATTAAAAGTGACCATTATTTCTAATAATTTCCCAACTAATGAATGAAGAAAATCTTGAAATGCACACCATTAAAAATGAATAAAATATTGAGAGAAACAGAAGAAAGAGAGAGAGAAAGTTTGTATGGGAATTAAATTGAGAGTGAAAGTCTTTGTATGGTTTTCAAAAACAGGAATAAAGGGTAATGAAGAAAGGAAGAAAAAAGAGGGTGGGTTTTTTGTCACTGTTTGATAAGTCAATCAGCTGTTTTTGTGTGTGTGTGGTTGTTTTTTATGTTGGTGCAGAGAAGATTACAAAATCTGAATCCAAAAACGAAATAATTTTGTAGGAAAGAAGAGTATTGTCCTATAGCTAAGCATTCCTATTTAAGGAAGAAAATGAGACAGCAGTGGTTAATTTACTTAAAAGAATAATAATAATAAGAATATTATATTTAATATTGTGATGAAGAAAGAGATGATGATGATGATGGTGATGATGGTAGCGAAGGGAGTGGGGGAAAAGGAATCACAGTGACTAAGAGTTTTTATCCCGTCCACTCCGCGGAAGCCAAATCTAAAGTCATCTTATTTTTTGGTACAATTTTTGTAGGTTTTGACTAAAGAGAGAGAGAAAGAGAAAAACAGAAACATCTTGTGCTCTATCTTCTTCCTTCATCTTCTTCTACTGTCATTTTCCGATATATACTCTCGAGGAAAACAAAACCCAAATCCACCTCTTTTCCTTCCCATCCCTCTCTCCATTTTCTTTCTCCTTTTATTAATTCAATTCCCTTTTAAAATTCCATTCCTTCTACCTCACTCACTGCTATAGCTTAACAACAACAATCTCTCTCTCTCTCTCTCTCTTACTCTCACCACATTCACAACAACCTCTTCGGCATGTCTGTTTTTTGTTTCTCAAAAATTTCCAACACTCACTTCTTCTAGCTCGCTACCTCCTTTTCTTCATCTTAGCTTTTTTTTTTCTCTTTTTTCACAACTTCTTCCTGGTAAGCTTTCCAGATTCTTTTCTTGGGAAAGACTGAAAATACAAAAGTGAAAAAGGGATTATATCACACACACTGTTGCAGGGTCTAGCTACCTTATATATCCTCCTCCTCACCTTGTGAATATTGCACTTTTAATTGCCGAGGAGTGTCAAAATCTGATGCCATTTTAATAAAGGAAAAGGAAAGGTGTTTGATATATACATACATATATATTTTGTGAGCATCAAGCCATCCAAATAAAGAAGA


Gene Sequence:
>Vu_00387(+)
ATGACCTTGGAGGGGATTTTCATTGAGCCTACTTCAACCACTGCTCCTGATCTTTCTCTTCACATAAGCCCCCCAAGCATCTCCTCTTCCTTAATTTCCAATACCAACAACATCATCAATTATGAACCCCAACCTAGTTTCCTTTCAAGGACTGTGTCTCAAGCCCACACAGAACTCTCTCTTGGAAGAAATTTCACTTCGGCAAGGGAAACACCACCACCAACACCAACTCCAACACCACACAACCCTTATTATCCAACCCAAACCCAAACCCAAACCCATTTCCATCATCTTCTCCACAGCAGCAGCAGCAGCACTACTACTACTAGTAATATTCCAACAAGTGTTCCTACAAGTGCCAACACTCCCTTGAATCACATAAACTATGGAGTTTCATTGCTTGATGTATCATCATCAGACGGCTTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCGTTCCCTTTTGTGGCCATGGACCATGCTAGAGACAACAAGGATCCTCATACCAAGATGTGCTTGTATCATCACATGCCTTCTTACCCATCTCTCTCTTCCTCGTGTTCCTCTCTGTGCTCCACAGCCGCTCCTTCTTCTTCGCCTTCGCCTTACTTCGTGGATCCCATGTCCTTCTTGAACAACGCTTCCACCGTGGGGTGTAGGACAGCCACTGCCACAAGGTTTAATGGGTTTTCCGGCGATGCTTTCAAATCTCATCCATTGCACCAATATGGGGTAGGCTCTTCAGAAGCCTCTTCGGGGTTCATGAGATCAAGGTTTTTGTCTAAGCTTCCCAACAAGAGGAGCATGAGAGCACCCAGAATGAGGTGGACAAGCACCCTCCATGCTCGATTTGTCCATGCGGTGGAGCTTCTCGGAGGCCATGAAAGTAAACAACGTTTCATTAATTTTCTTCCCTTTTAATTTTTCTTAATTTCTCTTGACCCCTCTATCTTTAATAGTATCATGTGATTATTCAAGTAGCTGATTTCATCGAAAAGAAAGATTTTTTTGTTGTTTGTCCTCTCATTTTCTAAAGTTGACTATATTTTGATTTTCTACTTTGTCTGGTTCTTTATTTTTATAAATGAGTTAATGGTGTGTACTAGTTTCTGTGTATTAAATTATAGGTCTTTATTTATCTAATGCGTTTGGATATGGTGGAATCAGGAGCTACTCCAAAATCAGTTCTTGAGCTCATGGATGTGAAGGATCTAACATTAGCTCATGTGAAAAGCCATTTGCAGGTATAGTTTTGAATTTCTCTTTCTGTTCTCTCTCTATGTTCATGTGGGGCGGTGTTTGTTGTCTATCCTACTGGCACGGTAACCGATGAAGAAAGCAGTGAATGTGGGAGTGGATGAATGAATTTAAAGTCTGTAGTCAGCTGAGTAGTGAGCCTTTAACGTCTGAGAAGACCAGACAGAAAACAGTTTCTGCTTTGAAAGAGAGAGAACAGACAAAGATCATCATTTTCCAATAATACACCCTCTCATTACAACCTCATCAAACATCAACCTCGTGATTAATGAGGTAACCCACCCAGACAATCCCAGAAGCCAACATAGAAAGAGAGAGAGAGAGAGAGTGAAAAAAAGGATCTAAATGGGAAATGATTTTCTATTCTTTAATGAATTTTGCAATAAAAAATTTGGATTTTTATATACATATATACACATCTTGCGCAGTCACGCACACTAATTAATGGATTTTCTTCCAACCATGGAAAAGCCTTTTATATAATGCCTTGTTTTTGTTTATGACTTCTTCCCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCATCTTCAGGTAATTCGTATTGCTTAATCTTCAACCCATTTTTTCTTTTTTTAGCAGCCTTATCTTTTTCTTAAGCATGCACCAACTAATTTTTTTGTCATAACATAATAGGGAAATAATATTGTCACACCTTGTTCTTTTTAGACCCTACATTTTTTTACTATTACCTTTAATTTTACCGCAAACTATTCCTTTCTTGTTCCTCCTCTCGTACTTTTACACAAACCACACACCCTTTAATAAAAAAAGGCCTCTCCACAGAGATATCAGATGTTGAACAAGACTCCACACTAGTACAAAATAAATTATACAAAGTACTGAGATGCATGCATGCGCATATATCATAAACATGTGTATGCTATATATATGAAACGTTAAAAGCTTTTGACTTTGCAGGCCATTCAGATGGGTCTGGAGAGGATGACTTATCTCCTATTGGCAGCACCGCCGATCGGGGCAGTCTCCGGCAATTTCCCAGCCACAGAGGGCGGCCGGATTGGGTGGCGCAACAAGACATGGACTACTCTTCCACCACCACTCTTTGGAGTAATTCTTCAAGGTACAACACTTAA