Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00390 LG1 6766005 6768677 zinc finger protein 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of abscisic acid-activated signaling pathway, glucosinolate metabolic process, regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, glucosinolate metabolic process, regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, glucosinolate metabolic process
Cellular Component   located in   chloroplast
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 6766287 missense_variant p.Asp252Asn
C/A 6767048 5_prime_UTR_variant
C/A 6767440 intron_variant
A/G 6768223 intron_variant
A/G 6768227 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00390.1
MKPNFDLEVEAHAEYESEVSSQVASNVSIQETSIGPCSDSLTNISHTTNPIGSHPNSDAISLDLTLNFKNSEPGGRDSIGFSFSSTSESSNEPASQTTAATISRVFSCNYCKRKFFSSQALGGHQNAHKRERTLAKRALRMGFFSERYANLASLPLHGSFRSLGVKAHSSLHHGFSPTMRPPEIKSNARFDQGYVGIPIFLEDDESDLLWPGSFRQVVEAGDSHQNFILTGSSDLSFTGVNPPVDIENSTPDLTLKL*RT*FGTVPALSCLLYCYVVVQ*


CDS Sequence:
>Vu_00390.1
ATGAAACCAAACTTTGATCTTGAAGTTGAGGCACATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATTGGGAGTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATATCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTTCATGGTTCCTTTAGGTCCTTAGGAGTAAAGGCACACTCTTCACTGCACCATGGCTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAGCAACGCAAGATTTGATCAAGGGTATGTTGGCATCCCAATATTCTTGGAAGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCTGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAGATTTGAGTTTTACTGGGGTTAATCCACCTGTAGACATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGAAGGACGTAATTTGGTACAGTTCCGGCCTTGAGTTGTCTGCTTTATTGTTATGTTGTTGTACAGTAA


Promoter Sequence:
>Vu_00390::LG1:6768677-6770677(-)
ATATATTATGATAATTGAGTATTATGAACTCAGTAGAGCGTGAGTAGAATGTGAATGGAACGTTTTGGAGTGTGAATTGAGCATAAGTGAAAACGTACCTGACTTTGTATTTATAATTTACCTCATGGATCCTGAGTTGATACAAGCCCAATAAAATATAAACAGAATAAGATATAATCAGATTACTTAAAAATCCGGTTGGTTGCAATATCTGTAATTAGATATTCTTTGATTATTTTATCATCTGCTGGACTGTTGACCCAGTAACAACTTAAGCGCTGACCCAATTACGGCCCAAACCATTTGACCAATAGCAGATAGACCGATCGACTTTATTCAGTAACCGTTCGGTCCATATTTCATTCGATACACTCACCAATCACAAAAATTCAAAGGATGTTGGTCAATGACAGATGAATATAAAGATGAAGAGGATCAATTACATTATAATAAAAAAGGTGTAGAAATAATAAAAAAAATGTTGATCCAAAACATAATATGGATCAATATTCATCTTATAAAAAAAAGAATGTCATACTAAGAAAAGAAAATTATCGTAATCAATACATAATAATAGTAAGAAAATTGCTATTATAGACACATAATTGCAACTCTAAAGAAGAAACTGTTAATATAAATAAAGACTACACTTCAGAAAGATAATATATTGACAATGAATACTCTGACTTTAAGGTTTTCCTAAATTCTTCCATACTCGAATGATTTACTAAACTCTTGAATACAACAATATCAAACATTCATATCATGACATCCATGTCATGATTATACAATTAAATCCCATAAATATTAGGAATCTTGAGATATGGAAGAACTTTATTTCTTTCCCAAATATGATGAAGCAATACTCAAAAGCAATAGATAGCAGCATTTGTCAATCTTTTAATACAAATTCTATGTAAATTATTAAATGAAATTTGAATTCTGATATAAATGAAAACGGTACACACAAGTTATGTATGTTCTAAGATGCTCGTGAAAAACAAACCCAACCGTCTTCTAAGTGAATAAATTAATAACAAGATGCTTTAATTGGTGTCTCTTTATAATTCTATCTAAAACCCGAAAGCAAGTTGAAGGAGCAGAAATGGAATTTAGAAAGAAAAAAACAGCGAGGGGGTTCACATAATTCATAAATACTATGTAAAAAAGGGTTGTTGGGAAGTGAAGGACAGGAGTTGCATTATTTATTGTGAGTGGAGTTGTTAAGAAACAAATGATGTCATATCATAGTACATGGGATCATGAATAATATATGGATGGTCCGAATAGGATGGGAAGAGTAGTTATGCTAGACGTGCTAGATGGAACCAAACATGAAACTTTGAAATCTGACCCCATGCATTGGTGTTATCTGAAACACTTTTGAAGTGGTGAAGATGGAGAGAGAAAGAAAGCTAGAGGCTTCAGAATCTTTGGTGGGAATAATGATTACACTGTTGTTGGCCTGTTTTTCGGTTCTTCCTCATCAACCTACTTCTACTTTCAACTTTGTAACTGCTTCTCACTTGTTAGCTTTCTCAGAAAAGTCTAAATTTTTGCAGAAGGAAAACAAAAAAGTTTAGATTTTTATATGTTGTTCTTAGCATAAACTTTTTTGCACAGTCATGGACAAAATTTTCATTTATGGCAAGTTGTAATGAGATAACAATTTAAAAGCACCGTTTTATAGACTATTTACTTAAAGAAAAAAAAAAAAGATTAGAGTACACTAACTAAGAGACACTGAAAATACTGTAGCACATTATTAATTTGATCATATCTCCCACTCTCTTTTTATATATCCCAAAACCTCCTTTTCTTCCTCTGACTTCTCTGTTCCCTAACTCTCCACTTCTTTCTTACCTGTTCTTTCCCATAATTAAACATCAATACCCACCATCTCTATGTCTCTCTCTCCCCATTTACTCTTCTTTGCTTTTTATTCCTTTTCAGTTAAACTTGTTAAATAAAAAAGAAAAAAATATCTAAGCCCACACCTT


Gene Sequence:
>Vu_00390(-)
ACCCTCTATTAGTGTTTCAGAAACATAGAAAACTCAATGACCAATTTTGTCTTCTCATAAACAGTCATAGCTAGGAAAGCTACACTGGAAACAGATGTCTCCGATTTCAAAGCAGTTTTTAGGTGATTTCAGAAGCAGGCCACTTTCACTTGATCTTGAAATTTGAGAAGGTATGCAACCTTCTTGCACTCTCATCTATGTACTTAAGTAAGTACTGTTTGTCTTACTTTGGTTTTCACTTTTGCTTCTCTCAACTCTTTCTTGGGTTTAGATGACTCTGAAATACTGAATAAAGGAAATGGTATGTGGATTTTACCTTCAAACTTTGTGTCATCGCATCAGTGCCTGCCCCGTTTTGCCTCCACCAAAATCTGCCTCTCTAGCCAAGCCTCCAGAGTAATTTTCCTCTCTAAACTGTCATAAGTAGGCTTTCTTTGTTGCTATACTGGGTGTTTGTTTATACAGAATGGAAGTCCAGGTAGATTTAATTCTAAAATTGAGAGGGACTGAGATGAAACAACCATCTTCATGCAGTTCTTTGTTTTCGATATGTTGATGTTGTTGGATCTCCATATTAATGTTCTTCTTTGTCTCTGTTTTGTGTGCTGAATGATGGTCTTACTGTCTCCAAGCTTTGACTTGCTCTTACAAACTGATGGTGTTCAAGTTTTTTCTGGGTGCTTCGTCCTCTCTCTCTCTCTCTTTCATCAGGAGACACTCATGACGTTCAATCTCCTTGGTCAATGAGTCCTTGGAAATATATAATAAGAAAGAATCTCCATATCAGATTCAACATTGATTTCAAAATAGATATAGTATATTACTAAATATAGTTAACAATTACAGGATTTTGATGATACTTTTGGCCATGATGAAATGTGAAAACACTGATATTGGCTAATTAATTATTCATGAACTTCATGGCATGTCCTTGCTAATCACTTACAACAAGCATATGTGAAGAAGATTCAGACAGTATGAGTTCCTTGCTAAAGATTTTAGAATTGTATTCTACAATCTGATTTCACCCTAATTTCAAATATTCGATCATACTTTCGTAAATCGGATGGCTTTGAATGTTTCCTATTAAGCACTCGGCATTCTTGTTTATATGAATTTTTAGTCGGCAAGTCTGAAAAAGCTAGAATATAGGATGGTTGAATTTTTGTGTTGAAAATAGTAGTAGTTTTTAAACATTACATTTTTCAACCGAATATGTCATAACAAATTCCGAAAAGGCAATTAAATAATGGTTTTGTTAGCAGATTTGAGTAGAGTTACGATCACTGCTACGAGTTACCAATCCAATATCCCATTTGGCTGGCCAAACATATAATGAAACAAACAAGCACCAACTAGAAATGCTTTTCCAGCAGGGAAAGTTCATTTTTAAGCCATAGGAATCATAAAACACGGTACTTGGATGAGTATCTAGTCATCTTTCACAGTATCAGTATTGATTCAAGATTTTTGTTATGATTGCTTAATGAGCTGATTGATTTTCTTGGCTTAACTAATTGCAGGATAAAGTAAATATCCCAGAGCAAGCTCAGAAATAGATTTCATTCTGGATAATCTGGTGGTTAACTCCCACTCCTATTTGTTAAATTAGCTTCTAACTTGAGCACAGCTACATCATGAAACCAAACTTTGATCTTGAAGTTGAGGCACATGCAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATGTTTCTATTCAAGAAACCTCTATAGGTCCTTGTAGTGACAGCCTCACTAACATTTCCCACACCACAAATCCAATTGGGAGTCATCCTAATTCAGATGCTATTTCACTTGACTTAACTCTCAACTTCAAGAACAGTGAGCCAGGGGGAAGAGATTCAATAGGATTCTCATTCTCAAGCACTAGCGAGAGCAGCAATGAACCTGCTTCTCAAACCACAGCAGCGACCATATCACGAGTCTTCTCTTGCAATTACTGTAAGCGCAAATTTTTCAGCTCTCAGGCTCTTGGTGGACACCAGAATGCCCACAAGAGAGAAAGAACATTAGCAAAAAGGGCTTTGAGAATGGGATTTTTCTCTGAAAGGTATGCCAATCTAGCATCTCTCCCTCTTCATGGTTCCTTTAGGTCCTTAGGAGTAAAGGCACACTCTTCACTGCACCATGGCTTCTCACCAACAATGAGGCCTCCTGAGATAAAAAGCAACGCAAGATTTGATCAAGGGTATGTTGGCATCCCAATATTCTTGGAAGATGATGAGTCAGATTTGTTGTGGCCGGGTAGTTTTCGTCAGGTTGTCGAGGCTGGTGATAGTCATCAGAATTTCATACTGACTGGAAGTTCAGATTTGAGTTTTACTGGGGTTAATCCACCTGTAGACATAGAGAACTCAACACCAGATTTGACTTTGAAACTTTGAAGGACGTAATTTGGTACAGTTCCGGCCTTGAGTTGTCTGCTTTATTGTTATGTTGTTGTACAGTAAGACATGCATGCAAGGGGCCAAGATTGCCAGATTCGTTACTAGACTTGTTGGGTTTCCTTTTAGTTTCATTTTCAGTTTTCTCTTAGGAATCTTGCTTTGGTATTTTGCTTTGTATGTTTCTAGTTGTATAAGGGCTCCGGGAGGACAATTTTGGAGCTTCTGTGCTTGTTATATAAATCATGTCTTTCCTTCACTG