Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00464 LG1 7598021 7599270 PREDICTED: putative transcription factor bHLH086
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, root hair initiation, root hair initiation, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, root hair initiation, regulation of transcription by RNA polymerase II, root hair initiation
Cellular Component   is active in   nucleus
Cellular Component   located in   mitochondrion, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding
SNP Position Effect Amino acid change
G/T 7598071 synonymous_variant p.Gly17Gly
A/T 7598092 synonymous_variant p.Ser24Ser
C/T 7598093 stop_gained p.Gln25*
G/A 7598171 missense_variant p.Gly51Ser
G/T 7598302 missense_variant p.Met94Ile
A/G 7598452 synonymous_variant p.Ser144Ser
C/T 7598636 synonymous_variant p.Ser175Ser
G/C 7598769 intron_variant
T/C 7598937 intron_variant
T/C 7598938 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00464.1
MALSLTSHGVSEYQKCGVEEEDGSQSTNGFSNDSASAITQSLINFKADEFGSLMQGSESFLSFQQSWMFSKESNLHEGCNQWNHVSPKNNTADMRLVQNFSCSETATCYSSIFNGEKEKKQCESSASGWLYSEPNVHSSSLNESAAQESVLRKRSFMGETMQAANNAKKPCTTASKATKPKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVQGGKAPDISQVRQAIDSILSSQR*


CDS Sequence:
>Vu_00464.1
ATGGCACTCTCTTTGACATCTCATGGGGTCAGTGAGTACCAAAAGTGTGGGGTTGAAGAGGAAGATGGTTCACAAAGTACTAATGGCTTCAGCAATGATTCAGCTTCAGCCATAACTCAATCTCTGATTAACTTCAAAGCTGACGAGTTCGGCAGCCTCATGCAAGGTAGTGAGTCTTTTCTTAGCTTTCAGCAGAGCTGGATGTTTTCCAAAGAGAGTAATTTGCATGAAGGTTGCAACCAATGGAACCATGTTAGTCCCAAAAACAACACTGCAGACATGCGCCTAGTCCAAAATTTCAGCTGCTCTGAAACTGCTACTTGCTATAGCTCCATATTCAATGGTGAAAAAGAAAAGAAACAATGTGAAAGTTCAGCTTCTGGGTGGCTATACTCAGAACCAAATGTCCATAGTTCTAGCCTGAATGAGTCAGCAGCACAAGAATCGGTCTTGCGAAAGCGATCTTTTATGGGAGAGACCATGCAAGCTGCCAATAACGCCAAGAAGCCTTGCACAACTGCAAGCAAAGCAACAAAACCAAAGTCAAGCCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCCAATGGCTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATTCCATTCTTTCATCTCAAAGATGA


Promoter Sequence:
>Vu_00464::LG1:7596021-7598021(+)
GGTGAGCCAAACGTAATGTACATGATGTACCTTATTAAATTTATATCATACATAAAAGCTTTTTCTAAGTGATCTTCAACTCCTATGATGTGTATGAAAATAATGTGTAATTTCTACTTTATATATCATATAATTACTTATATCTATTAAATGTTTCTTTGACTGATAAAAAATGTAAGTAGCAGAATTTCTCCATCTTTATTATGCTAACGATTTTGTTTTGTGTGTTTTTACTTCTTAGGTTATAAGAAAATAACAACGACATTAACACATCTAATAGCAAATAAATAAATACCTATCTAAGCATAATTTTACATACCATTTCCACGAGTAACTACATCTTAATTTCTTATATTTACGTACTTACACTTTGTATAAGCTATTATTATTATTAATAACATATTATCCCGTCTATCGTGGTTTATTTTAATAACTAAAATGTAAATATAAATATCTAATTATAAATTTATAATTTTGCACTCTACAGAATATGAAGTAACATACTATTAACAATATTTTATTACAAATCTTTTATTTATATAGGTTGAATATATGAAATTAATCTCTATTTATAACATAAAATATGGGATAAGTTCAAAATATAAATAAATAATAATAATAAATTAATTAAAGATAAAAATAAATATAAAATAAAGATAATATATTTAACACTCTTTTTCAAGATAATACATACAGATCGTATGTATCAATCTTGTTACTAATATAATCCCTAAAGACGGTGAAAATATCTCCTTCTGCACTCGTGATACCAAATTATTAATTATTTGTGAAGACAACATAGAAGACGAAATATTAACCTAAAAAACTTTCCTAAGCAACAAATGTGAGAGGTTACTCTATATAAATATCTTCTTGCAAATCGCCATTGAAGAATGCATTGTTGACTTTCCGAGGATAAAGAGATCATTGTTAAAGAGCTACCACGGCTATAAATAAATTAACAAAAATCATATTTGCCACAAGAAAAAAACATATATAAACTAATCAAAAACAATGGTGATAGAAGGAAGGTGAGAAGAGACAATAATGAAAAATGTCATTGATGAACAAAAAATAAACCTTAAAAATCTAAAATTTTTCGATCAAAATGCATCACGAAAAGAAAAAAAAAATGACCTCATCACTTTGAATCATTGTCTAAAAGAAGATAACACATACTGTCATACACAACGGAAAAGGGAACATATTCTCAACTTAAAAAAGCGTAGTATTTGTACATATATACTTTATTTTTTTTTAATCTAAAAGGTTCCAGTTGCATGTACTCACCGTTTAGTAAGTGAAGAAGTAGGGCTAGAACACATACTATATGGTCGTAAGCAAATAAGTTTAATTAGTTATTTGTATATGAATTAAAAAAAAATGTTCCACGTTACTTCTCCCTGCACATTTTTCAATCTTGGAGAAAATAAAAAGAGAAAATAAATAAAATTATGTACAGAAGCCATCATGCATGCCAATCAGTGCTATCTTAGCCAGTTCAATAACTAACGCAGACAGCTACACAGAATGTTATAACATATATATAATATAGACTTCACAAAATAGAGTATGAATCCACGTGCTTAAGTTTTAAAAACGAAGCATGTGAGAAGCTAAGTTAGTAGCTACAACTTCTTCATCAAAGTGAGACTAACCAAATTGGAATCAATCAAAGAGAGACGTGGGTTTTGCGAAGGATCCGGCGACCCTTATGCTACTTTCCATTCTCTTTTGCCAGCTAACAATCCCAATAAGAAGATGAATTAAACTAACACTTTTTAAATTCCTAAACACACATCAATATTTTAGTATTCTACTTTGATTTTTGCTCCCCATCATACTAAAATATTTCAGTTCCAATTCCCATCAATGCAATATGGTAGTTGCTTTCTGAAGGCTATATAGAGAGCTCTTCTTCACTAGTTCTGTCATGCTCATTATTGACCTTAAAAAACCTTAGCTAATTCTACATTTGGGTGGGTCGTTTACTTCCCTAA


Gene Sequence:
>Vu_00464(+)
ATGGCACTCTCTTTGACATCTCATGGGGTCAGTGAGTACCAAAAGTGTGGGGTTGAAGAGGAAGATGGTTCACAAAGTACTAATGGCTTCAGCAATGATTCAGCTTCAGCCATAACTCAATCTCTGATTAACTTCAAAGCTGACGAGTTCGGCAGCCTCATGCAAGGTAGTGAGTCTTTTCTTAGCTTTCAGCAGAGCTGGATGTTTTCCAAAGAGAGTAATTTGCATGAAGGTTGCAACCAATGGAACCATGTTAGTCCCAAAAACAACACTGCAGACATGCGCCTAGTCCAAAATTTCAGCTGCTCTGAAACTGCTACTTGCTATAGCTCCATATTCAATGGTGAAAAAGAAAAGAAACAATGTGAAAGTTCAGCTTCTGGGTGGCTATACTCAGAACCAAATGTCCATAGTTCTAGCCTGAATGAGTCAGCAGCACAAGAATCGGTCTTGCGAAAGCGATCTTTTATGGTATTGTTGGTTCCTTAATCACATCTTAACTTCATTTTTTTTGTACGTATATTCTTAGAATGGAAGATTGATGTGAGATTGGTGTCTATAGGGAGAGACCATGCAAGCTGCCAATAACGCCAAGAAGCCTTGCACAACTGCAAGCAAAGCAACAAAACCAAAGTCAAGCCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGGTTTGCTTAATTGCTTCAAACCTAACATAGATTATGTTGCATATAAGTGTACGAAGTTTTGATTGCAAATTAAGAGAACTTAAAATATGAGATTCAATGCTGATAGAATGTTTGTATGTGTGTATCACAGAATAGAAGAGAGAGAATAAGTGAGCGGCTTAAGATACTCCAAGAACTGGTCCCCAATGGCTCCAAGGTAGATTTTTCAAACTAGTCTGAAATGCTGCATTCTTTTGCATTTCCTTTGCAACAATAACTATGATTATGATTGAACTCCATTGATGAATTTTGCAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGGGAATAGCACACAATGCACTAATTTCCTTGTTCTTTTGATATGCATATATATTTTTTGGTCATTCAAGGTCATCATGGAATCTCACCTGTTCTGTGAAACATCTTTGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGACATTTCTCAAGTAAGACAAGCCATTGATTCCATTCTTTCATCTCAAAGATGA