Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00472 LG1 7682897 7683887 PREDICTED: transcription repressor MYB4-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of phenylpropanoid metabolic process, negative regulation of transcription, DNA-templated, negative regulation of sinapate ester biosynthetic process, negative regulation of transcription, DNA-templated, negative regulation of sinapate ester biosynthetic process, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, response to UV-B, regulation of phenylpropanoid metabolic process, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, negative regulation of sinapate ester biosynthetic process, regulation of phenylpropanoid metabolic process, negative regulation of sinapate ester biosynthetic process, response to UV-B, negative regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 7682942 missense_variant p.Pro170Leu
C/T 7683038 missense_variant p.Arg138Gln
T/C 7683066 missense_variant p.Ile129Val
C/T 7683159 missense_variant p.Val98Ile
T/A 7683209 stop_lost p.Ter81Leuext*?
G/A 7683269 missense_variant p.Pro61Leu
G/A,* 7683315 upstream_gene_variant
G/A 7683441 upstream_gene_variant
C/A 7683863 stop_gained p.Glu9*
T/G 7683864 missense_variant p.Lys8Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00472.1
MRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAVQEFLTVPFLWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSRPHASSAEAASTSESMNNKVPIFKSPLAATHHRISFTEQESAIISSPSLNLDLTIALPSSMIGALEDKPVQNSESTKTLDMEIDLNC*


CDS Sequence:
>Vu_00472.1
ATGCGAAAACCTTGCTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATCAGAGTTCACGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGTACAAGAATTCCTTACAGTACCATTTTTGTGGTCACTCATTGCTGGAAGATTGCCCGGAAGAACAGACAATGAAGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTGATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCCGAGGCTGCATCAACATCCGAATCCATGAATAATAAAGTTCCTATCTTCAAATCTCCACTTGCTGCCACTCATCATAGGATTTCCTTCACAGAACAAGAATCGGCAATAATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCTATGATTGGTGCTTTGGAAGACAAGCCTGTACAAAATTCCGAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG


Promoter Sequence:
>Vu_00472::LG1:7683887-7685887(-)
TAATTATTATTATAACATAAATTATATTTTAATAATTATTAAAATATAAAATTATATTAAATAATATTTAAATTTTAAATTTAATTATTATTAAGGTGATACAAAGTCTTTTTAACAAGAAAAAGAAGAAAATAAAAATATATTTATTAAAATTAAAAATAAATTTTCTATAAAGTTAAAGGTGTAGGATAATGATGAGATGTCAGAAGATTAAAAGTGAAATTTTTGGAGGTGCAGGATGAGATCTTGAAGGTGTAGGATGAAACACTAAAAAAAAAATAACGAGGAATGTCTCTAACGTCCAAAATGAACCTCTATCATATCTCTTAAGCTAGTTTCCTATATTCCTAAGGTGTGTCTCTCTAACTTTGTCAAACCTCCAAAATGAGCCAAGAATTTGTACTTGATTATTTTGTAATTGAAATACCCAAATTTATTGCTAATTGGTTTTGTTGAAATAACTAATTTTGTTAAAATATTCTTCAATCTTCAAGAATTTCTACTTATGTGCATAATTTTCCACAATTTATTAAATAAAAATCTTAACTATATGCAAAGTAATAATAAAAATATCAATAAAAAATAAAAATAAATGAAATAAAAAATAATAGTAATGTCAATTATCATGATAACACAATTTTAATTCAATTTTGATAAAAGTTGTGTCACGCTGACACAACTTACTCTAAAATTAAAGTTGTATCATATTAGTACGATTTCAATTTTAAAAATGCTTGCTACAACTTTTTCACATTAAAGTTGTCTCACATTTTTTGTAATTTTGTTCAAATTTTCCCATTTCATTTAAGTAATTTTTAAAATAAATTGCAGCAGAACGATGCTTTTGCCTACCAAGTTACTTATGTCTATCTATATATGTGATTATGGTGTTTAATTATCTTATAAGTTTATCATATTAGATAATGATATATAATATAAGTATAATGACATAAACAAGGAAGTGCAGATGCGACTTGTTGTTGAGCTAGCTTGTTATATATATATACCGAGTTAGGTATAAGTTCATGATTCATGATTGCAGCACGATGGACCTGTTTGTTCTTATATATATATTTTGGTTAGAACTAAACAACCTCGTTTCCGTGTCTACGATGATGTTCGTATGAGTCACGCTGTGTGGTTGGAGACATCAACTTCTTCACTTGCATTCATCCATCACATGCATCTCATTAATACGTATAAATCTGCTCTTCATCTCACTCACTTTTTCTCTTAAGACAAATTTCATTTATAGTTTTTTTTTTTACCTCAAAAATATGTATTCCAACTGTATCATGACTTTTAAACATGTAATCATATGAAAGTTACTACATGTATTAGACATAAAATCAATTTATAAGATATAAGTAAATATAGATTTCACTTTACAAAAGTTCATTTAGATTTGGAAAAGTAAAAGTTTGAATGATTGAATTGACATGGATAAACTTGTGGAAAGATGCTTTAGATGTAGGATGGTCAAGAAGGACATGCAGAGAGTGATCTTGGGCGGTTTGATGCCTGTTATATATATATCTCTGTCTTTATCCAAAATTTGGCTTATCATGCGTTACTTTCTCCAAATAAAAGCTATTACAGACACCAGAGTTTTTTGTATATCTGTACGAAAACTGTGAATTAGACCCAATAACCACCATATTATATAGTGTGCAGATGTTTAAGATTCATGACAAGGACATTTACTTAACGGTAAGCAATGGAATGCTAAGAACACCTAAGGTCAAATGCATGCCCTTAACCTATCATATCACCAAAACAAACACATTTCACAGTAAGTTATAATAACCATTCACCACCACCAACAACAACACAGCAAAACCACCAGTCCAAGTCCACACTTCATCCTCTCTCCTTTACAAATATATATCCATCTACCCTCTCTTCTGCCGTTTGTCAGACCTTCCATCCCTTCTTTTTCTCTCTCTCTCTCATCACAACCTCAACCTCCTACAAAGGTGGACTTCACAAAGAAACAAACT


Gene Sequence:
>Vu_00472(-)
ATGCGAAAACCTTGCTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATCAGAGTTCACGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGTTAGTCTTTATTTTACTTCCACTCATGAGGGTTTATCATTGGAGAGAGTTGCAGTTTCAAGAGGGTTTAACACAGTTGAATCATTTTAAGCTATAAAGAAGAAAAAGTTTCATTTGCATATGGAAATTCATTCAACTGTTATCAGTACAAGAATTCCTTACAGTACCATTTTTGTAATCATTTGTCGTTCAACATATATATAGGGTTGCATCGTTGTGGCAAAAGCTGCAGGCTGAGATGGTTAAACTATTTGCGACCAGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCACGCCCTCCTTGGTAACAGGTAACTTCAATTACTATATCAGTTATGAAAATTGAATAAGAACTTTTTCATTAACAAATATAACACATTATGAGAAACTTTTGGCAGAGAATTCATTTTAATTGGATGCATATGTTTGAAAATATAGGTGGTCACTCATTGCTGGAAGATTGCCCGGAAGAACAGACAATGAAGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTGATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCCGAGGCTGCATCAACATCCGAATCCATGAATAATAAAGTTCCTATCTTCAAATCTCCACTTGCTGCCACTCATCATAGGATTTCCTTCACAGAACAAGAATCGGCAATAATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCTATGATTGGTGCTTTGGAAGACAAGCCTGTACAAAATTCCGAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG