Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_00506	LG1	8083259	8084358	PREDICTED: LOB domain-containing protein 33-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, hormone-mediated signaling pathway
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/T	8083373	missense_variant	p.Ala39Ser
T/C	8083447	synonymous_variant	p.Asp63Asp
G/A	8083692	intron_variant
T/A	8084259	missense_variant	p.Asp186Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_00506.1

MTGFGSSCGACKFLRRKCTSDCVFAPYFSYDQASSHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEEIDALGSMVANSTVSVVNCGTVQAPMYSDNGIPYDTLQHDATRTQYFQNNLANFLSEDGNARALQSLESQMNIELPNAHVEEPSFGDSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKG*

CDS Sequence:
>Vu_00506.1

Promoter Sequence:
>Vu_00506::LG1:8081259-8083259(+)

ACTAGAAATAAGTTTATCTAAAATTCGGTATGAGTTTTCATTGAGTTAATATAAAATATTTAATTAGTTTCCAAAATCTCAAATTTGACCACTTTAATTCATGAAATTTAAAAATTTTCGGTTTCTTTATGTAAATATAATTAGAAATTTCTTCTAAGGAACTATAGATCACTATTATATTATTCTAATTTTATATTTTTATTATTAAATGTTTTATGGTAAATAGTATTGTCAAAATGGATCATTCAACCAAATTCAACCCAGTTCACTACGAGTTGTCTAATTAGTGAGTTAATTCAACTAAACTATTTATTAACAAACCAAAAAAAATCTGAATTCAATTCAGCTCACCATAGGTTGGTAGATTACACAAGTTGGCTCATTGGCTTACCTATTGACAAGGTTTTTTTTTTCATTTCTAAAAAAATACATATTTTTTCTAATTCAAATCTAAATAAGTTTCAATCCAAAATGAAGTTAAATTCTAAAGACAATTCAAAATAATAAATATATATATATATATAATATAATCCAAATACAATCCAAAATCATCTCAAACTCTAAAAATAATCCAAAAGCAAACAATAAAAATAAAATTAGATAGGTTGGCGAGCTAACTCGACTCACCACAGGTTTAATCTGAGTGAGTCAAATTCTTAATAGATTGGACTCAAAATTGACCTGTATCAAAATTTCAAATTGTTTTTGAACCCAACTCGGTCTGAACCTATGATGGATCAGATTGATTTATGAATTCCAACCCATTTTGACAACACTAATGATAAATGTAGTTTTGAAAGTATTTATATTTAACATCAAAATGCATTAATAAAAAGAAATCTAATTTTAAACATTAAAAAATTAAATTTAAATTTAGAGAATAAAAAGAAATTTATATACTGTGAACTAAAAGCTTATTTAAATAATTAATCTATAAGACAGAGAGTTGTAGGTATCTACAGATCAAGAGGATGAGGATGTAACTTGACAATAAAGAAGGTTGAAGAGATAACAAAGATGATTGATGCATGATAGAGAAAGACAATTTCATCGTTAAACTCGAAAGCTCAAGACAATGCCATCCACCAACTCATACCTCTCCCTTCTCACGCATGTCCATGCCTCAAAGACAAAAAAGTTCACAGTTCTGAAGTGACACAAACCAGAAAGTTATCCAACTCTTACTGCCATTGTCTCCCAACTCCTTCTTCCACCTTTCATCATCAACCTTCTCTCTACAAACAAAATTATTGGATAATTTCTACATCTCTTCTATACTTCCAAGTCACGTGATATCATCCAGTGAAACAGACACCGAAACAATAGTGAGACAGATTTTGTATTGCTCATATGTTGTGTTTTTTTTTTTGGGTGAGAAAGAATCCGAAATGAGCACCAAAGAAGTAACAGATAACAGTGGGAACAGTCTAACTCACCTCAAACCATAGTCTAAGTGGCCAACAGCTGAACCTGAATTATGGTGGGGATTAAAATATGCACACAAAGAACAAGTGGCAGATGAATGAATATTAAATTGGAGGAATTAAAGGACCATTAACAATCTCCAGACAAATGGCCGCAATGAGTCATGAACTCTATGCTACAAACTAGATTATTAGCTAAAGCGTGCATTATAACTCAAACTCACAAAAACACAAATTGTAGTAACTATACTTTTCTCCCAACCCCAAAAAATGATGATGATTGGATATTCAATAACAGAAGCATTAGGGAAAAAACTTTACGAAAAAAAGCCCTTTTGAGGCATAAAAGAGGAAAAAAATACCCTAATTGACAAGGACAATGTAGGCCACAAAAGGGACCCAAAAGAGCAACATACTTTAAACTAAACCAAGTGAGAATGTCCTTTGGACACGGCAGAAGGAGCTGACGCTCCCAGGTGGTGCCTATAAAGGTTCCAATCTTGAGCTCTCCTTAGACAAAATTAGTACAAACTCTTGTATGTAGAAATCATTCACATCGTAAAACCTTGGAGACAA

Gene Sequence:

>Vu_00506(+)

ATGACAGGGTTTGGCTCATCGTGTGGAGCATGCAAGTTCCTAAGGAGAAAATGCACCAGTGATTGTGTATTTGCTCCTTACTTCTCCTACGACCAAGCTTCATCCCATTTTGCAGCAGTGCATAAGATTTATGGAGCCAGTAACGTCTCCAAGCTACTGTCACATCTTCCAATCCAGAATAGAAGAGATGCTGCCATCACCATATCTTACGAAGCCTTGGCTCGCATGCATGATCCTATTTATGGCTGTGTTGCTCATATCTATGCATTGCAGCAACAGGTGCTGTGACTCCACGACATGCTTTATCACACCATCATTTAGGAACCCGAATTCCCTACAGTTGGATTTTCACTCATTCAGCAATCTGAAGCCTTCGGATGAGATTAGATGGCTCGTATTTTATCTGGGAAAACTACACTTAAATCACGTATTGGGCTCTGAACCGTCTAATCTTCATTCGAAGGTTTCAAATGCAACGACTGCATAAATGTGTGGAAAAGTAACTGCTCTGAATCAGTTCAATAACTTACATATAGTTTAATGGTTATGTCCTAATAGTTTTACATTTCAACTATTAAAATCACTATCATATGTTTCTTAACATAGTTATTTTACAAGTCAATAAGTTTATTATATACCTTAATTAGGATTAAACTAGTATGTTTCTTAACATAGTTGTTATATAAGTCTTGTGTTTTGTATAAAAACTCGAACTTGTGCAGGTTGTGAACTTGCAAGAGGAGATAGATGCTCTTGGAAGCATGGTGGCAAACTCCACAGTTAGTGTTGTCAATTGTGGCACTGTCCAAGCACCAATGTACTCAGACAACGGAATACCTTATGATACTTTGCAGCATGATGCTACGAGGACACAGTATTTTCAAAACAATCTAGCAAACTTTCTTTCAGAAGATGGAAATGCCAGAGCCTTGCAAAGTTTGGAGTCACAGATGAATATAGAGCTTCCTAATGCACACGTGGAAGAACCTTCCTTTGGTGATTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTGTTCGTGAATCATCCATGGTTCAAGCATAATGCAGACATAAAGGGCTAG