Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00509 LG1 8135219 8136067 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   ethylene-activated signaling pathway, ethylene-activated signaling pathway, response to auxin, response to cold, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to cold, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, ethylene-activated signaling pathway, response to auxin, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, positive regulation of transcription, DNA-templated, ethylene-activated signaling pathway, ethylene-activated signaling pathway, ethylene-activated signaling pathway
Cellular Component   located in   nucleus, nucleus, nucleus, intracellular anatomical structure, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 8135235 missense_variant p.Glu178Val
G/A 8135360 synonymous_variant p.His136His
A/T 8135368 missense_variant p.Trp134Arg
G/A 8135496 missense_variant p.Thr91Ile
G/A 8135553 missense_variant p.Ala72Val
G/C 8135557 missense_variant p.Pro71Ala
G/A 8135608 synonymous_variant p.Leu54Leu
G/A 8135620 synonymous_variant p.Leu50Leu
C/T 8135639 synonymous_variant p.Glu43Glu
A/G 8135642 synonymous_variant p.Ala42Ala
G/A 8135643 missense_variant p.Ala42Val
C/T 8135781 intron_variant
A/G 8135803 intron_variant
C/G 8135870 intron_variant
G/A 8135882 intron_variant
A/T 8136002 upstream_gene_variant
C/T 8136016 splice_donor_variant&intron_variant
G/T 8136018 missense_variant&splice_region_variant p.Ser17Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00509.1
MSITHTLNSAIASFPTSSPTSLHKKPQLNRKPSLQISLPKKAEWIQFGKLENQLEKKHYRGVRQRPWGKFPAEIRDSNKRGSRVWLGTFDTAIEAAKADDRAAFRLYGSKAILNFPLEAGVMDATVEAKGERKWRHQEEEVEEVKPVEKNEKMTEQEVNYFWEMLLTPKVEDDQGKVEDDEP*


CDS Sequence:
>Vu_00509.1
ATGTCCATCACCCATACCCTAAATTCAGCAATAGCTTCCTTTCCAACATCTAGCCCCACGTCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGAAGGCTGAGTGGATCCAATTTGGGAAACTGGAGAACCAGCTGGAGAAGAAGCACTACAGAGGAGTCCGTCAGCGGCCTTGGGGAAAGTTCCCCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACTGCCATCGAGGCCGCCAAGGCTGACGACCGTGCTGCCTTCAGGCTCTACGGCTCAAAGGCCATCCTCAACTTCCCACTCGAAGCAGGCGTGATGGACGCAACCGTTGAGGCCAAAGGCGAAAGGAAGTGGCGGCACCAGGAGGAGGAGGTAGAGGAAGTGAAGCCGGTGGAGAAGAATGAAAAAATGACAGAACAAGAGGTGAACTATTTTTGGGAGATGTTGTTAACGCCTAAGGTTGAAGATGATCAAGGTAAGGTTGAAGATGATGAACCCTAA


Promoter Sequence:
>Vu_00509::LG1:8136067-8138067(-)
GTTTTGGGTTGTGCTGAATTTAGGCCTGTAATTAAGAAGAGAGGGTTTCTCCCTAAACCACCACGGACTTCTTCCTCCACTACCCTATTCCACAATTGCCCCCTCAATGAAAATTGAATTACCGTGGTTAAAAGGTTAAAAAAATAAAAAGAAATCGTTGAAGGAGTCAATGAAAATGGGAGATATGTTACGCCTTCAACGGATATCGACATCCGTTGAAGGTCAACGGATCTCCCATTTTCATTTACACCTTCAACCATTTCTATTTATTTCTTATAACAAAAAATTTTTTTATTCTTTATAAATAAATATATAATAATTATTAAATCAACTAAGAAAACAATTATAAAGTTCAAATAAATAAATCTACAAAAATAATAATTACTAAACTAAAAATTAAAAAAAAATAAACAAGAGAACCGCGAAGGCCTCAATGAAAATGGGATATTCATTGAGCCTTCAACAAATATCCATATCCGTCAACGGATATCGAGATCCGTTGAAGGCCCAACGAATTTCCCATTTTCGTTCAGGGCCTTCAACACTCTCTTCTTTTATTTTCTTCACAGACCACGTCCAAATACAGTAAACCAAACATAAACAAATTTAACATGTTCACATCACCTAAATATACATATAAACAGCAAAGAAATACATGTAAATGAACATGCAAACCATTAAAGGAGAAGAAGAAACCAACCTGGTGTCCAGTCACGAAACCAATCAAGCACGAAAGTTGTAAACGAGCACACCCCTCCGCAAACAAACCAAGCACACCCTCAATAAACGAACAAGCCCTCAGTGACTGGATAAAAGCAAAAAAAATTGAAAAAGAAATTGGAAGAAAACAGGAAAAGAAGGAGAAGAGAACACAAAGGAGGAAGAAAGAATGTTGAGATTTGTGGTGTGAGGGTGGAGGAGTGGGGTGCAACTGAGGGAAGAGTAAAAACGGAAATTTAAAAGGGAGTTTAGGGTTTAAAAAAAGTTAAAAGTTAAATGGTAAAAGTAAAAAATATTTACCTAAGGGTAGTTTTGGAAAATAAAAAAGTTGGGGAGGTGTAGGTAGAAATGTGTGGTGGTGTAGGGAGAAACTCTCTTAAGAAGGACGACGTCATTTTGAGGCTTGGCAGCTGCTTCCTTTAGAGTGCTCGAGCAAAGGCCTTATTTCCCATATGTGAAGTGAAACCTCTCGACCTAGGGTTCGCAATTTGTCAATAAATATCACGCTTGAATATTCTTCTTCCTCCTTTCTTCCTCTCCACCTTTAGCCGACACTATTGTTGTGGCATCCATTATTGCTTCACTACTGAATCATCTTTACACCAATATCATGCCTCCGTCATCGCCATCACAATGGACTCCAACTATTCCTCCTCTTCCTTATTCTTTTTTTCTCTTCTTCTTATTCTCACTCATCTCCACTTAATTTATAAAATAATCTCATAAAACTCAACAAAAATTTTAGCATTCTTTTAATTGATTGTTTTGTCTGTGAAAAAATCCATCAATAATAAGATTTATAAATTACTAACTAATTTTACCAATGAATTTTAAGATATATTATTACCAACGAATTTTACATGAATTAGTTAAAATCCAAAGTGGGAAGTTTACGTTATTTTATTGATAAAATTATAATTTACTAACAAAATTTACTGATAGATATATTAGTGGTGGAAATAATTATCCATAATATAAGAAAGGTTAAACCCCTCTAGTTGTCCCTATTTATGCAGGTTTTTCCCAGTTCGATCCCCGTTTTTTAAAATCCCCAATTGAGTCCTAAATAATGCTAATTTGAATCAATTGGGGCCCTACCGTTAAATTGGCTTAACGGGGGTTAAGGTTTTGCTGAGGTGGGAGGTTGACGTGTCAATTTTTTTAAATTGGCATTCACAGAGCTGTACGTGGAATTTAAAAACATTTTAATATTTTGATTAAAAAATTTAAAAAAAAGTTATCTTCCATTACAATCAAGCACCACCCAGAATTCATTTTCC


Gene Sequence:
>Vu_00509(-)
ATGTCCATCACCCATACCCTAAATTCAGCAATAGCTTCCTTTCCAACATCTGTAATTCCTGCACATTACACAACAATAATGTCCTGTTAATATTAAAACTTGAACCCTCCAAATACTGTCCATGGAAGTTAACTTAATAGAAACATATAGAAAAACAATCAACGGTCGTAGTAATAACCATCATCCAGAAATTGAAAGTCACCTCAGCAGAAGCCACTAATGTAAGAAATTCTCTGCGGTTCATTCCTGTGAATACCCTCGCAGTAGTAATAGTGGATTTCCCCTTGGTTATAGTGCCTGTTTTGTCAAACAGTGGATTTCTGGCAACCACTTTTCTGGGTATGCTCCTAGAGCCCCACGTCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTCTGCAAATCTCTCTCCCCAAGAAGGCTGAGTGGATCCAATTTGGGAAACTGGAGAACCAGCTGGAGAAGAAGCACTACAGAGGAGTCCGTCAGCGGCCTTGGGGAAAGTTCCCCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGACACTGCCATCGAGGCCGCCAAGGCTGACGACCGTGCTGCCTTCAGGCTCTACGGCTCAAAGGCCATCCTCAACTTCCCACTCGAAGCAGGCGTGATGGACGCAACCGTTGAGGCCAAAGGCGAAAGGAAGTGGCGGCACCAGGAGGAGGAGGTAGAGGAAGTGAAGCCGGTGGAGAAGAATGAAAAAATGACAGAACAAGAGGTGAACTATTTTTGGGAGATGTTGTTAACGCCTAAGGTTGAAGATGATCAAGGTAAGGTTGAAGATGATGAACCCTAA