Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00598 LG1 9184536 9187569 PREDICTED: zinc finger CCCH domain-containing protein 29
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to fungus, defense response to fungus, cellular response to hypoxia, cellular response to hypoxia, response to cold, regulation of transcription, DNA-templated, defense response to fungus, cellular response to hypoxia, response to cold, cellular response to hypoxia, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding
SNP Position Effect Amino acid change
T/A 9184558 5_prime_UTR_variant
A/G 9184563 5_prime_UTR_variant
A/G 9184565 5_prime_UTR_premature_start_codon_gain_variant
C/G 9184636 5_prime_UTR_variant
T/C 9184689 5_prime_UTR_variant
A/G 9184798 upstream_gene_variant
C/G 9184807 upstream_gene_variant
G/C 9184931 upstream_gene_variant
A/G 9184995 upstream_gene_variant
G/A 9184996 upstream_gene_variant
G/T 9185090 upstream_gene_variant
T/C 9185154 5_prime_UTR_variant
A/G 9185156 5_prime_UTR_premature_start_codon_gain_variant
C/T 9185181 synonymous_variant p.Ser7Ser
A/G 9185428 missense_variant p.Ile90Val
G/C 9185614 missense_variant p.Ala152Pro
G/A 9186123 synonymous_variant p.Lys321Lys
G/A 9186477 synonymous_variant p.Gln439Gln
G/A 9186595 missense_variant p.Ala479Thr
T/C 9186603 synonymous_variant p.Asp481Asp
T/A 9186869 missense_variant p.Leu570Gln
C/A 9187408 3_prime_UTR_variant
T/C 9187430 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00598.1
MCSDSKSKLSSPSLVMENNIQKQNLDCFRNFSALLELSASDDFEAFKREVDEKGIDINEAGFWYGRRIGSKKMGSETRTPLMIASLFGSIKVLKYILEAGTVDVNRACGSDMATALHCAASGGSESSHEIVKLLLDAGADAESLDATGNRPANLIAPAFDSSSKSRRKAMELLLRGGERDELVSQEMELQIFSASLSAKEGSEKKEGSDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKADSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSSSALDMTSMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLDSPVRQQQQQQQQQLIEEIARISSPSFRNKEFNRIGDLNPTNLDGLLAAADPSVLSQLHGLSVQPSTPTQTGLQMRQNMNHLRASYPSNIPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGASTHHLGLSSPSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPMAQHEHVEPDVSWVHSLVKDVPSERSEMFGGDLSKEMLPPWVEQLYIEQEQMVA*


CDS Sequence:
>Vu_00598.1
ATGTGTAGTGATTCAAAGAGCAAGCTTTCTTCTCCGAGTCTCGTGATGGAGAATAATATTCAGAAGCAGAATCTTGACTGTTTCCGCAATTTCTCGGCTTTACTTGAACTGTCTGCTTCCGATGATTTTGAAGCTTTCAAAAGAGAAGTGGACGAGAAGGGCATAGATATCAACGAGGCTGGCTTTTGGTATGGCAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCATTAAGGTTCTCAAGTATATTCTCGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATATGGCCACTGCTCTTCATTGTGCTGCCTCTGGAGGCTCTGAATCTTCACATGAGATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCCCTTGATGCTACTGGAAACAGGCCAGCTAATCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGCTCCTCAGAGGTGGTGAAAGAGATGAACTGGTGAGCCAGGAGATGGAGCTGCAGATTTTCTCGGCTTCTTTATCAGCAAAAGAAGGCTCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCTGATATAAACAACGGTGTGTATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCGGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCAGAATTCCGTAAAGGGACCTGCCAGAAGGCTGATTCCTGTGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTCTGCAAGGACGAGACTGGCTGCACCAGAAAGGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCAACCGGGTCAGCTATGCCTTCACCAAAATCCTATTCATCCAGTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTACCTATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACTCCACCATCACTTCAGCTTCCTGGTAGCAGACTCAAGGCTGCTCTCAGTGCCAGGGATCTGGAGATGGAGATGGAGCTGCTCGGTCTAGATAGTCCAGTTCGCCAACAACAACAGCAGCAGCAGCAGCAGTTGATAGAGGAGATTGCCAGGATCTCTTCTCCGTCTTTCCGCAACAAGGAATTCAACAGGATTGGTGATTTGAATCCAACCAACCTTGATGGCCTGTTAGCCGCTGCTGATCCTTCTGTGTTATCACAACTACATGGACTTTCTGTGCAGCCTTCGACACCCACCCAAACCGGGCTTCAGATGCGCCAGAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGTTTCATCGATCGTGGTGCTTCAACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCAGATTGGAGTTCCCCAACCGGGAAACTCGATTGGGGTGTCAACGGAGATGAGCTGAACAAGCTCAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACTGCTTCGCCCATGGCTCAGCACGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA


Promoter Sequence:
>Vu_00598::LG1:9182536-9184536(+)
TCCCACTTCATTCAACCAAACCCAGTTAAGCAACTCTAGGCAAAACAACAATAGTTTCCGAACTAAAAAATGTTGGAGTTGGAGTCATGAATAAATAAAAGAAGATAGGGCAAAACAGGGCAAAACAATGCATGAAACTAAACCTATTACGACCAAAGGTGTCCGGTTTTGATTTTTTGAAGGTAAAAAGTATAGTGGAAGGCTGAATCAGAAACTTATCCTGTTAGTGCTGAGTGCTGTCTGTCACCCAACTGCGACCCACTCACATAAGCATAACACAATCAAACGTTGTTTATAAATATTTTAATTTTATACAATACAAAGAGCCAAACACAGAACCAAAACGCGTTCAAACTATTAATGTGTTGAACTGCCATACCCAATACTCATTCTACTGTGGTCCCCACACTCTTTCTTTCTTTCTGTCCTAACATAATTATACAATTATTTTATTATTTTTATTGTTATTATTTAGTTACATAGGTCTTAGAGTGGACTAAGTTTAACTAGTAACAACATAAATTAATGAAGCCAACAAGTGGATTGGGTCTCTGTCCCTTTTTTTCAAAAGAAATTTCTTTTTCAGCAGTGATTATTTTCCACTTTCAATGCTATAAAATTGACTATTCTTTCCCTTAAATTATTCCCAGTAAAATGGAAATGGATTAAGTAGTAAAACTTTCAGAAAATGCAAGATATATAGAATGTGTTTGACAATTTTTATCTAACTTTTAGCTTATTTGGTTGAAGTTAGTTTATTTGGTAGATAAACTTATAGTACTTTTTACATGTTCTTTAGATTGATGTTTTTGAACTCATTCCACCTTCAATAATATTTTAAGTAAATTTTTCATTTACATCTTCCTTTGATACTATATTATTCATTTTCACAAATCATATTTTTATAGTACTTGATATTCAAAATGAAAAAAAATTGAATATATCATTTGAGGTCAGATAATTTCATTAAATATAGTAATTCTGCAAGGTTTTTTAGTTCATATAAATGCTCAATGACAAGAGAATTGTCATGACATGGATAACACAGTTCCTGAACTTTCAATTTAATTTATTATCTTTCTTGCAATAATATAAATAATATAATTGTGTCCTACCATTGCCTAGAATTTAAACTTAAACATTCTGCATGTGCAAAATTGAACAGACTTTGTTGAGAAAATATAAGAGGTTCTTTCAAAACAAAATAATCACTTAAAAGAATTATTAACCCCAAATGGATGACTATAAACCTTATTTTATAACCTATGATGTTAAATATCTCTATATTCTGCTTGAACATAATATTACAAATATTACTCTTTTAAAATTTTACAAATTCATTTGATTTTAATTCTCCTTTTATATTTTCAATTTCTTGTTCACTTGCACTCCTCTTCCTATTCAACATGTTTTGGAGATGAAAAACTTAACAGGACACTTACTAGTGTTTCTGGATTATAATTTGTAATCATGAATATTATAAGCAAAACTGACATTGATGATGACATTAACATATTAAAAAGACTAATAATCCGGTAAAGATTAAAACTTATTTTTTTTATTTTAAAATTATAGACTGTTTTGAAAAAAATATTGTCTGATCTTCAATTCAACATATTTTGAGTTTTTTTTGTTTTCTCTGAAAGCAAAACAAATGATTAAAGAAAGAAGAAAGATGATAATGGCCCAGCGCGTAAGTAGTGAAGAGAATCACAACTCAAAAGGCACGTGAGAGCGGAACTGCCCGTTGAGTTTCGTGGAGGGGTAATGGATGGTGGGTCCATGTGGAGTTTGAGTTGCATTTGAGTGTCATTTGAGGTTTCATTCACATCTGCATTTGCATTTGGAAAGATAGTGACATTAAGCAAACGCTGCTGGTGGGGCCAAGCTTTAGCATTGAATAATTGACTTTGACCAAAGAGAGAAGGAAAGAGAAAGGAGAGAGAAGAAAGAAGGAGGAAGAAAAGTCACACTTTCCTCCCTTCTTCCTTTCCCATCCC


Gene Sequence:
>Vu_00598(+)
CCAATAGCTGTTGCTGGTGTATTGACAATAAAAAGGCCTTCCATACCCTTCATTCTCCCTCATCTGTGCTCAATCGAGGTCTTCTCGATTTTCTTCTTTACAAACAACAACGCTTCCTTGCAACCAACATACACTTCTTCTACTCCTACTCTCTGTCTAATCCACTACTCAAAAGGGTATGTCTTTCTTCTCCTGTTTTTACTCATAAAACCTCTTTTTTTGTGTTTTTGTTTGATCTTTGGTTATTGGTCGGGTCTGACGGAATATGCTTCCTGGGTATGCTTCTGGATAGATCAAAGTTTTAAACTTTGTTTTAGATGTTCTGAGTATTTTGTTTTTTTCCCTTTTAGTTTCCTTGTTTGTTTCCTGTTGAGGTATCCCAATAACAAGCTTTTGTCTTGGATAGTATTGGTTATGGATCTAGTTTTTGTTGGTTAATTGGTTTACCACGTTTTTGTGAGAAGTTAACTAGCCGTGAATATTTAGGGATTTGGAACCAGGGTTGTTAGAAAATTTTGTTTGTAAGTTGAAGGTTTGGTAGTTTTTTTTGTTCTGTGTGAAAGATGGTTTTTTAATTGATAGACTTATTGATTGAGATTATGTGGTGTTGTGCAGAATTTAGGACATGTGTAGTGATTCAAAGAGCAAGCTTTCTTCTCCGAGTCTCGTGATGGAGAATAATATTCAGAAGCAGAATCTTGACTGTTTCCGCAATTTCTCGGCTTTACTTGAACTGTCTGCTTCCGATGATTTTGAAGCTTTCAAAAGAGAAGTGGACGAGAAGGGCATAGATATCAACGAGGCTGGCTTTTGGTATGGCAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCATTAAGGTTCTCAAGTATATTCTCGAGGCAGGAACTGTTGATGTGAACAGGGCCTGTGGTTCTGATATGGCCACTGCTCTTCATTGTGCTGCCTCTGGAGGCTCTGAATCTTCACATGAGATTGTGAAGCTCTTGCTAGATGCTGGGGCTGATGCTGAATCCCTTGATGCTACTGGAAACAGGCCAGCTAATCTGATTGCTCCTGCCTTTGATTCTTCCTCCAAATCCCGGAGGAAGGCCATGGAGTTGCTCCTCAGAGGTGGTGAAAGAGATGAACTGGTGAGCCAGGAGATGGAGCTGCAGATTTTCTCGGCTTCTTTATCAGCAAAAGAAGGCTCTGAGAAAAAAGAAGGAAGTGATAAGAAAGAGTATCCTGTTGATATATCCTTGCCTGATATAAACAACGGTGTGTATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCTTGCTCAAGGGCCTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCGGGCGAGAACGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCAGAATTCCGTAAAGGGACCTGCCAGAAGGCTGATTCCTGTGAGTATGCTCACGGTGTTTTCGAGTCCTGGCTACACCCTGCCCAGTACAGAACAAGGCTCTGCAAGGACGAGACTGGCTGCACCAGAAAGGTCTGCTTCTTTGCCCACAAACCTGAAGAGTTACGCCCTGTGTATGCTTCAACCGGGTCAGCTATGCCTTCACCAAAATCCTATTCATCCAGTGCACTAGACATGACATCCATGAGTCCATTGGCTCTCAGTTCCACATCTTTACCTATGCCAACTGTTTCAACCCCACCCATGTCTCCATTGGCAGCAGCTTCATCTCCAAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACTCCACCATCACTTCAGCTTCCTGGTAGCAGACTCAAGGCTGCTCTCAGTGCCAGGGATCTGGAGATGGAGATGGAGCTGCTCGGTCTAGATAGTCCAGTTCGCCAACAACAACAGCAGCAGCAGCAGCAGTTGATAGAGGAGATTGCCAGGATCTCTTCTCCGTCTTTCCGCAACAAGGAATTCAACAGGATTGGTGATTTGAATCCAACCAACCTTGATGGCCTGTTAGCCGCTGCTGATCCTTCTGTGTTATCACAACTACATGGACTTTCTGTGCAGCCTTCGACACCCACCCAAACCGGGCTTCAGATGCGCCAGAACATGAACCACCTTCGTGCGAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCCTCAGCTTTTGGGTTTGACTCATCAGCTGCCGTGGCAGCTGCAGTGATGAACTCAAGGTCTGCCGCCTTCGCCAAGCGAAGCCAAAGTTTCATCGATCGTGGTGCTTCAACCCACCATCTTGGCCTGTCTTCACCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTCTCAGATTGGAGTTCCCCAACCGGGAAACTCGATTGGGGTGTCAACGGAGATGAGCTGAACAAGCTCAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTAACTGCTTCGCCCATGGCTCAGCACGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCGTTGGTTAAGGATGTTCCTTCTGAGAGGTCGGAGATGTTTGGTGGTGATCTGAGTAAAGAGATGCTGCCACCATGGGTGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGAGCAAGGGCTGCTGCCATGGCAATGCTGACAAGTTTATTTATTTATTTAATTATTTAATTTATTTGAACTGCCACTACTATCCAACATTACACAGTATAGTTAGTGATAGAACATGTTGCAAAGAACAAAGTTCAGGTTAATCCACAGATTTGAACGGAGTTCCAACTTCTAGATGAGGGAAGAAGACTTGGAAGAAACGTTGAAGAAAGGATGCTGAATTTTTTATTGTATAATATAGTTTATAATCAATTCCCCCTATTTCTCTACGGGTGGATGATGTATTATTTTCTCTATCAATTGGACCCAAACTATTTGTCATTATTGATTAAGTCTCACAATTCTTTCTATATATATTATGCCATTTCATCAATACTT