Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00613 LG1 9360909 9362444 PREDICTED: ethylene-responsive transcription factor ABI4-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   lateral root development, abscisic acid-activated signaling pathway, root meristem growth, sugar mediated signaling pathway, response to glucose, regulation of triglyceride catabolic process, mitochondria-nucleus signaling pathway, regulation of triglyceride catabolic process, response to water deprivation, response to glucose, seed development, seed development, regulation of triglyceride catabolic process, response to osmotic stress, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of protein localization, regulation of L-ascorbic acid biosynthetic process, regulation of L-ascorbic acid biosynthetic process, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, starch catabolic process, response to sucrose, positive regulation of transcription, DNA-templated, regulation of stomatal movement, lateral root development, positive regulation of transcription, DNA-templated, seed development, starch catabolic process, abscisic acid-activated signaling pathway, regulation of L-ascorbic acid biosynthetic process, response to trehalose, sugar mediated signaling pathway, starch catabolic process, positive regulation of transcription, DNA-templated, response to stress, seed development, response to osmotic stress, positive regulation of transcription, DNA-templated, lateral root development, abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, regulation of triglyceride catabolic process, positive regulation of transcription, DNA-templated, hexokinase-dependent signaling, root meristem growth, regulation of L-ascorbic acid biosynthetic process, mitochondria-nucleus signaling pathway, response to water deprivation, sugar mediated signaling pathway, response to water deprivation, abscisic acid-activated signaling pathway, positive regulation of transcription, DNA-templated, root meristem growth, starch catabolic process, hexokinase-dependent signaling, regulation of transcription, DNA-templated, hexokinase-dependent signaling
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 9361311 3_prime_UTR_variant
G/A 9361381 synonymous_variant p.Asp310Asp
A/T 9361440 missense_variant p.Leu291Met
G/C 9361637 missense_variant p.Thr225Ser
C/T 9361795 synonymous_variant p.Pro172Pro
A/C 9361959 missense_variant p.Ser118Ala
A/T 9362009 missense_variant p.Leu101His
C/G 9362180 missense_variant p.Cys44Ser
A/G 9362407 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00613.1
MASLQPQPQETKPTVTTATPSTPSLTSITSNHTTINNNNTARKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAALILYGSRAQLNLQPSCSSSHSSSSRTTSSSSTQTLRPLLPRPSGFAFNFPFHAAALPYPCAAAYATTFNYTPQALCPNENSNNTVHVHRHHHHRRPEEVVQVPHALSTSYPKSESDVSLGGNNTTANSSSRSTSYQRHGFQDNNRLHVQHDHSSNHQQHQKGDVDGVDSVVGSAEGSQANMEASEDPDLSLVGTVGLGSSSSLWPLASEDDYTDNLWDYNDPFFFDL*


CDS Sequence:
>Vu_00613.1
ATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGCCACACCCTCCACTCCCAGCCTAACATCTATCACCTCCAATCACACCACCATCAACAACAATAATACTGCTCGTAAATGCAAAGGCAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACCCGCAAGTGGCTCGGCACCTTCGCCACCGCAGAAGACGCCGCCAGAGCCTACGACCGTGCCGCCCTCATCCTCTACGGCTCCCGTGCCCAGCTTAATCTCCAACCCTCCTGTTCTTCTTCTCACTCCTCCTCCTCTCGTACCACCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCGGGCTTCGCTTTCAATTTTCCCTTCCACGCCGCCGCCCTTCCCTACCCCTGCGCCGCCGCGTATGCCACCACCTTCAATTACACCCCGCAGGCACTGTGCCCTAACGAGAATAGCAATAATACAGTGCATGTTCATCGTCATCATCACCATCGTCGACCTGAGGAAGTGGTGCAAGTGCCACATGCTTTATCAACATCATACCCAAAGTCGGAATCCGATGTGAGTTTAGGTGGGAATAATACTACTGCTAATAGCTCCAGTAGATCAACCTCGTACCAGAGGCATGGTTTCCAGGATAATAACCGTTTGCATGTGCAACACGACCATTCGTCGAATCATCAGCAACATCAGAAAGGCGATGTGGATGGAGTTGATTCCGTTGTGGGTTCGGCGGAGGGTTCTCAGGCAAATATGGAGGCTTCCGAGGATCCAGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCGTCCCTGTGGCCTTTGGCGAGTGAGGACGATTACACTGATAATTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG


Promoter Sequence:
>Vu_00613::LG1:9362444-9364444(-)
CATGATTAAGTTCACTCTAGACAACTTCTCAAACAATGTAATATTCCTTCATCATAGTTTCTTTTATGAAGAAAATTACCTAACATATTTGTTTTATATATACATCCATTCGTATAAGATCGTATATATAATTTTTACTAAATCGTCAAAATTTATGTTTTCTTCCATCAATACAGTTTGAGCTTGAAAAAGATAATATCAAGAATGATTTAAACACAGATATTACTATTTATATGTTTATATACAGATAAAATTTCACTACTTTTGTACACATAAAGGCATTAATATTATTTCATTAAATTTAAATTTGTAATGAATAAATTTGTTATTGATTTGTGAAATTAATATTTATATCTAATTGGTCTCCTATTTGTATTATGCAGTCTGTTATTATGGATGATTTTTAAAGTCCAGAAGTAATTAATGAACTTAACATTAATGTGGCACGTTTATTTGGTTGATAAAATAAATTAAAATCAGAAAGATACACTTCTATTTCAAGACTTCAAGTCCCTAGTTCCTTCTTGTATAACTCAAAATGGTCTTTTAGTCTAAACCTTTTAATGTTATTCCGATTTCAATATACTTTAACCACAAAACAAAACAAAATAAAATAAAATAAAATATTATCAACTATTAAAATAATTGAAATTTAATTAATAAATAATGATTGCATCTGGACGAATGTTATGACAATTTTGTTGTATATTGTTTTTGAGAAATTTGTGAAACAAAAAGACAACTAAAAAAAAGGAGAGAAAACAAAACTGAGTGAAATAAATAAATAAATAATGACAAAGAAGAGAAATGGTTAAATACTGGAAAATGAAAGAGTAATGTAAGGACCTATAGGAAGTCAAAGCCTTCTGATTCTTCTCAAGGAAAATATTTCATGTATATTTCTAATTTTCTTAGACATTTCTAATATCTAATAATAAATTAATATTTTTTAATTGATTTATCTTAAAATATTTTACATTTTAAAATAAAATACCACTTGATTTGTGTCAGATGAGTATAAAGTAAAAAATGGAGTATATACCTGTGAATTGTCTCTCTTCTCTCAACTGTTTCAGTCTCGTTGTCATTTCCCAATGAAAAATGGAAAAGTTATTGCTTTATTCTTAAACACTTTAGTGGGTAGGATGAGCAAATTTGTATTTTCCGAGCTGTAATTCTAAAGAGTTACAGACAAATCTCTTATACGTGCCAAAAATATATGTCTTGTGTATTTTTTTTAATTCTAATTTGATGAATTCTATGAAAATAACTTGTGATGAGTATAACATTTGTATAAATAAATAAATAAATCTCCTGATTCTTGAGGACATAATTTTGATTGCTTTTGAAAACTGCGGAATAAATGATCTAAAGAAAATCTAGTCATTCGCAAACATGAAAAACTCTAGTGCAAAGTACACAAACATGTACTGTAGCCACAAGTTGGAAGAGAAAGTACCTAGGTATATAAGATAAATTGTCTTTGGTGGCTTTCAGTATATATAAGTATTGGAAGTTCAGCATGGTTGATAAATAAACCAAACAAAAAAAACAGATATTTTTGAAGCACAACAACCTTCCAAACATAATCATGACAGTTCAATGGAGGAACTGCATGCACTTGTATATATGTGTCTATTAGCTGACATTCACAGCTATTTTCTTTGTTTTGAAGAACAAACTTCCAACATCAGTCACATTTACATTTACGACACAGTCCCATGCAAATGGTGTTATTTATAAAGGTAATTAATTTAAATTGATTATATATAGATAATTAATTTGAATTGTGAAGAAAGATTGGGTGGGAAAGTAGGAGGAAAACAGTAAAGAGAGGAAGAGGGTGGTAAAAAGTTGGGAAAGAGAACTTGAGCAGAAAATGAAGAAAAGAAAGAAAGAAGGGAGTGTTTGTTTTTTTTATTTATTGGATGGAGAGAGATGAGTGGGGTGCTTTATTCTCTCTCATGTATAAATTGCATGTTACACCGCCCTATTCCACC


Gene Sequence:
>Vu_00613(-)
ATTGACAGGGATGACATCGAAACCCCTTTCAGCAGAGTCTCCTCTTTGGACTAATCAACATCAACGCTGAACGAGGTACCCAAGGGTCTCCATCTTTCCATCTTTCCCCTCAGATTAAAAACTGGGCCCAACCAATGGCCTCTCTCCAACCTCAACCCCAAGAAACCAAACCCACCGTCACCACCGCCACACCCTCCACTCCCAGCCTAACATCTATCACCTCCAATCACACCACCATCAACAACAATAATACTGCTCGTAAATGCAAAGGCAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCACGTAAGCGCACCCGCAAGTGGCTCGGCACCTTCGCCACCGCAGAAGACGCCGCCAGAGCCTACGACCGTGCCGCCCTCATCCTCTACGGCTCCCGTGCCCAGCTTAATCTCCAACCCTCCTGTTCTTCTTCTCACTCCTCCTCCTCTCGTACCACCTCTTCCTCTTCCACTCAAACCCTAAGACCCTTGCTTCCTCGCCCCTCGGGCTTCGCTTTCAATTTTCCCTTCCACGCCGCCGCCCTTCCCTACCCCTGCGCCGCCGCGTATGCCACCACCTTCAATTACACCCCGCAGGCACTGTGCCCTAACGAGAATAGCAATAATACAGTGCATGTTCATCGTCATCATCACCATCGTCGACCTGAGGAAGTGGTGCAAGTGCCACATGCTTTATCAACATCATACCCAAAGTCGGAATCCGATGTGAGTTTAGGTGGGAATAATACTACTGCTAATAGCTCCAGTAGATCAACCTCGTACCAGAGGCATGGTTTCCAGGATAATAACCGTTTGCATGTGCAACACGACCATTCGTCGAATCATCAGCAACATCAGAAAGGCGATGTGGATGGAGTTGATTCCGTTGTGGGTTCGGCGGAGGGTTCTCAGGCAAATATGGAGGCTTCCGAGGATCCAGATCTGTCGTTGGTGGGGACAGTGGGGCTTGGATCTTCTTCGTCCCTGTGGCCTTTGGCGAGTGAGGACGATTACACTGATAATTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAGAGAAATTTTAGTTCCGATTGCTTGATTAGATGTGTGTTCGGAAGATCACACATAGATTGAAACTATTGTGAATAAAGTGTTGGAGACACGACCCAGACGCTGACGCTGAAAGTTTATTGCTTGTTAGTTCTAGTATTAATTATTAACTGTGGATACTGAGGGTGGTAGAAATAAATTAGTTTTCCCAGTTTAGATTTAGTGCAGCTGGAAAATAATTGCTGAGAACTCGAATGCATTCTTCCTGGTGCTTGAGGATGAATCCAGGGTTTTGTCTCATTCCAAATTGAGGTAAGCCTTTTCTATTATTTGGATTTCAATGTTGTCTTGGATCAAATCTCTTTTCTCTGTGGCAACCAGTGGTTGAGAAATTTAATGAATGAAAAGAAAAAAAATACATGTTGCTCTCAGTTCGTCTTTT