Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00731 LG1 10622564 10624549 protein LYK5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   innate immune response, cellular response to chitin, innate immune response, protein phosphorylation, innate immune response, protein phosphorylation, protein phosphorylation, cellular response to chitin, cellular response to chitin
Cellular Component   located in   plasma membrane, extracellular region
Molecular Function   enables   protein homodimerization activity, protein binding, chitin binding, protein kinase activity, kinase activity, protein kinase activity, protein kinase activity, protein binding, chitin binding
SNP Position Effect Amino acid change
T/A 10622586 missense_variant p.Val8Glu
A/G 10622596 synonymous_variant p.Val11Val
T/A 10622597 missense_variant p.Ser12Thr
G/T 10622616 missense_variant p.Cys18Phe
T/C 10622674 synonymous_variant p.Asn37Asn
C/A 10622681 missense_variant p.Gln40Lys
G/T 10622705 missense_variant p.Gly48Cys
T/G 10622864 missense_variant p.Ser101Ala
A/G 10622891 missense_variant p.Asn110Asp
C/G 10622938 missense_variant p.Asn125Lys
A/T 10622947 synonymous_variant p.Val128Val
T/C 10623034 synonymous_variant p.Gly157Gly
G/C 10623052 synonymous_variant p.Ala163Ala
T/C 10623082 synonymous_variant p.Cys173Cys
C/T 10623085 synonymous_variant p.Ala174Ala
T/C 10623159 missense_variant p.Val199Ala
T/G 10623164 missense_variant p.Ser201Ala
C/T 10623191 stop_gained p.Gln210*
A/C 10623192 missense_variant p.Gln210Pro
A/T 10623193 missense_variant p.Gln210His
T/G 10623230 missense_variant p.Ser223Ala
T/A 10623233 missense_variant p.Phe224Ile
T/C 10623234 missense_variant p.Phe224Ser
C/A 10623247 missense_variant p.Phe228Leu
G/A 10623260 missense_variant p.Val233Ile
C/T 10623266 synonymous_variant p.Leu235Leu
A/G 10623292 synonymous_variant p.Leu243Leu
G/A 10623373 synonymous_variant p.Lys270Lys
C/G 10623517 missense_variant p.His318Gln
A/G 10623524 missense_variant p.Ser321Gly
G/A 10623527 missense_variant p.Asp322Asn
A/T 10623764 downstream_gene_variant
A/T 10623784 downstream_gene_variant
T/G 10623786 downstream_gene_variant
G/T 10623884 downstream_gene_variant
G/T 10623949 downstream_gene_variant
C/T 10623958 downstream_gene_variant
T/C 10624012 downstream_gene_variant
G/A 10624091 missense_variant p.Arg380Gln
A/G 10624109 missense_variant p.Lys386Arg
A/T 10624153 stop_gained p.Arg401*
G/C 10624165 missense_variant p.Asp405His
A/G 10624166 missense_variant p.Asp405Gly
G/A 10624222 missense_variant p.Gly424Arg
G/C 10624277 missense_variant p.Gly442Ala
G/A 10624300 missense_variant p.Gly450Arg
C/T 10624381 missense_variant p.His477Tyr
T/A 10624419 synonymous_variant p.Pro489Pro
T/A 10624481 missense_variant p.Val510Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00731.1
MATGVWPVAAVSLVLLLCSSIPKSESQQEYVNNKQLNCSQHETNATNGNLCNSVPSCASYLTFKSSLPDYTTSISISYLLNSSTSAMAAANNITDVQSIPSETLITVPINCSCSGLYYQHNASYNIKVQGETYFSIANNTYQSLTTCQALMDQNTYGERDLVAGLDLHVPLRCACPTQKQSEAGFKYLLTYLVSQGETVSSIAEIFGIDQQSILEANELSDTSFIFYFTPISVPLKTEPPTNLLRAAAPPNDSPSPPPPAAEEDSDSSKKWVIIGIVVGVVVLLLVCAALFFFCFYRQRRVQQPSPTPAAKAFSGPTHKQSDEMTLPTSQSWSLSSEGIRYAIESLSVYKFEELQTATVFFSEENKIKGSVYRASFKGDDGGFQLTRHVVGTQGYMSPEYIENGLITPKMDVFSFGVVLLELLSGREAVGGVKNGSGEQMLSVTVNQVLEGENVREKLRGFMDPNLRDEYPLELAYSMAELAKRCVARDLNARPQISEVFMTLSKIQSSTLDWDPSDELEQSRSVSQISDSR*


CDS Sequence:
>Vu_00731.1
ATGGCCACCGGGGTGTGGCCCGTAGCCGCCGTATCACTGGTGCTCCTCCTCTGTTCCTCCATCCCAAAATCTGAATCCCAACAAGAGTACGTCAACAACAAACAACTAAATTGCTCCCAGCACGAAACCAACGCCACAAATGGCAACCTCTGCAACAGTGTTCCATCATGCGCATCCTACCTCACCTTCAAATCTTCCCTCCCAGATTACACCACCTCTATCTCCATCTCTTACCTCCTCAATTCCAGCACCTCCGCCATGGCCGCCGCAAACAACATCACAGATGTCCAATCCATCCCCTCCGAAACCCTCATCACCGTTCCCATCAACTGCTCCTGCTCCGGCCTCTACTATCAGCACAACGCCTCTTACAACATCAAAGTACAGGGCGAAACCTACTTCTCCATCGCCAACAACACATACCAGTCCCTCACCACGTGTCAGGCTCTCATGGACCAAAACACCTACGGTGAACGTGACCTCGTTGCGGGTCTCGACCTCCACGTGCCTCTAAGATGTGCCTGCCCCACCCAGAAACAGAGCGAAGCAGGGTTCAAGTACTTGCTCACTTACTTGGTTTCTCAAGGAGAAACGGTTTCTTCCATCGCTGAAATCTTTGGTATTGACCAACAGAGCATCCTCGAAGCAAACGAGCTTTCTGATACCTCCTTTATTTTCTACTTCACGCCGATTTCAGTTCCTCTAAAAACAGAGCCGCCAACGAATTTACTGAGAGCAGCGGCTCCCCCGAACGACTCCCCGTCACCGCCGCCTCCGGCGGCGGAGGAAGACTCGGACTCTTCCAAGAAGTGGGTCATTATCGGAATCGTGGTTGGGGTTGTTGTGCTGCTTCTTGTCTGCGCTGCTCTATTTTTCTTCTGTTTCTATCGGCAGCGACGGGTACAACAGCCATCGCCGACTCCGGCAGCGAAGGCTTTCTCGGGCCCCACCCACAAACAGAGCGACGAAATGACTCTTCCGACGTCGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGTTACGCGATCGAGTCGTTGAGCGTGTACAAGTTTGAGGAGTTGCAGACGGCGACAGTGTTCTTCAGTGAAGAGAACAAAATCAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGGGATGACGGGGGATTTCAATTGACAAGGCATGTGGTGGGGACTCAAGGGTACATGTCACCTGAGTACATAGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTTCGTTTGGAGTTGTGCTTTTGGAGCTTCTTTCGGGGAGAGAGGCTGTTGGTGGGGTTAAGAATGGATCTGGGGAGCAGATGCTGTCGGTGACTGTGAATCAGGTGCTTGAGGGAGAGAACGTTAGAGAGAAACTTCGAGGTTTCATGGATCCAAATCTGAGAGATGAATATCCTTTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATGCAAGACCACAGATTTCTGAGGTTTTCATGACTTTGTCCAAGATTCAATCCTCTACGTTGGATTGGGATCCCTCTGATGAGCTTGAACAGTCTAGATCTGTCAGCCAAATTTCTGATAGCAGATAG


Promoter Sequence:
>Vu_00731::LG1:10620564-10622564(+)
AAAAAAGCATTAATTAATCACTAAAATAACCACTACTTACAATCATAAAGAAATATATTTTAGGTTTAGAAAACACCTATCTTCAAGGCACAAGAGATGAAAGACACCTCCCATGAGATCCACAAGGGATAAACACCTCCTTTGAATATGAACAGTTTCTCCTAGCAAGAGTAGCAACACTCAATCACTTAAGACACACTCAATGAAAGTTCTTGCTCTACCCACACTAGGTTTTTCAAAGTCATTTTTCACAAACACAAAGAGTTTTTCTAGCAATCACAACTCTAAACCTATAAATGAAAAGTTATTTTGGAAACTAAGTTTAGTTAAAACATATAAAATCTCTCTATTGAAAATTAAGTCAAGACATTGAAGAGTCTAATCGCAATTGCTACTGATAATCAATTATCTCAAATGATAATTCATTATCTCATAAACCTCAAAAAACATTTTGTCACTGTGATAATCGTTCACCAACACTGATAATCGATTATCAATAACAATAAACGATTATCACATAAGTTTTTATGAAAAGTAAAATTTTTCCTAAGTGTTATATCTTTTGACTAATGATTTGCCAATTTAAATAATATACACAAATTATAAGATTTCAACAATTAAATTTTTAAGTTTTCAATATATCTTTTCAATCCAAATATTCTTTAAGTTTCAGCACTTTTTTATAAGTTATCGTCATCAAAACTTTTTCTTGAAAGGTAATCATCATCTTTTGTCATCAAATTTAACTTTTTTGAATTTTTTATATTTAATATATGAAAAACCAAAATTATGTTTTATGTTTTACAAACTTTATTTATGTATTGGTTTCTTTATTTTTAAATCTAACCCTAGTTTTCTTTATCATTAGTGAAGGGTATAGATGCAATGAAAGAAGAAAAGCAATTAATTGTGGTTGAATTTTTGAAATTCGTAGATAGTTTTCGAAAACCATGGCCTACTTTAATATAATAATATTCACCAAAAAAGATAAAAAAAAATTAAGTTTCTTATTCTTAAAATAATCCAAATCTAAAAGGTTAATATAAAAATCTAAGATAATTTTAATATAATTTTTTTCCATTAGTATTAAAGAAAGTAAGTTACAAAATAAAAACAGCATTTTTGACGTATTTAACGAATCAAATTAAACTAAATCTCCTTTATCATCCTTAGCAACAGGAAGTCAACCTAACCTAAAGCCAACAAAGTTAATTTGATGCAACTTCCTCTCTTTTTCCACAACCTTCATTATCAGTTGCATTTGAAATAGTATTCTTGTGGTCAATGATAATTGCAACACCAATATTTAAAATATAAAAATAAAATTAGAAATATACATATAATTTTTTCTTAGCGTTTAGCCTCTGTCCTGTTGTTGAATTCCATCTGTCTTCTACTGCTAAAAACAAATAATTTATTTCATGTCTCCACGGACATTTGCTTCTTCTCTCCTTCTACCTGTTATATATAATTTTATTTTACACTCCCTTTGTTTTCATTTCAAATTTTCTTCTCGTTATATAATTTCCAAGCTAATAAAACAGTTGCGTGTGTGACGGCTACATTATCCAACCACATAAGCCACGGAATCTTGCATTTTGTCTCAAGTCAAACTACATTTATCTTCCAACTTGTACAATTCAACATCGTAGCAGAAAAGAACAAGACATGTTCATACTTACTTCACACCTTCCAGAAGAACTACAAAGAAATCCAGCTCATTATTAAAATGCTGTTTTACCCGAAAGAACAATTATTCAAAGTGAACATTAATGTGAATCTCAGTAAAAATAAGCACAGCATTTCAAAGGTGGAAAATTCCAAAAACAAAACGAGTTTGACCGGGTCTCCACCCCATTCCATACGGTTTTTTGTTTGCAACACAAAAAATTGAAACTTGATAACACAGAGTAACGCGTTCTTTGAATTTAAGCTCAACATACCCTCCAAATCAAGAAAGCACTCATTTTTTTTTTTTGTTTTTCTTCACCACTCAAAAA


Gene Sequence:
>Vu_00731(+)
ATGGCCACCGGGGTGTGGCCCGTAGCCGCCGTATCACTGGTGCTCCTCCTCTGTTCCTCCATCCCAAAATCTGAATCCCAACAAGAGTACGTCAACAACAAACAACTAAATTGCTCCCAGCACGAAACCAACGCCACAAATGGCAACCTCTGCAACAGTGTTCCATCATGCGCATCCTACCTCACCTTCAAATCTTCCCTCCCAGATTACACCACCTCTATCTCCATCTCTTACCTCCTCAATTCCAGCACCTCCGCCATGGCCGCCGCAAACAACATCACAGATGTCCAATCCATCCCCTCCGAAACCCTCATCACCGTTCCCATCAACTGCTCCTGCTCCGGCCTCTACTATCAGCACAACGCCTCTTACAACATCAAAGTACAGGGCGAAACCTACTTCTCCATCGCCAACAACACATACCAGTCCCTCACCACGTGTCAGGCTCTCATGGACCAAAACACCTACGGTGAACGTGACCTCGTTGCGGGTCTCGACCTCCACGTGCCTCTAAGATGTGCCTGCCCCACCCAGAAACAGAGCGAAGCAGGGTTCAAGTACTTGCTCACTTACTTGGTTTCTCAAGGAGAAACGGTTTCTTCCATCGCTGAAATCTTTGGTATTGACCAACAGAGCATCCTCGAAGCAAACGAGCTTTCTGATACCTCCTTTATTTTCTACTTCACGCCGATTTCAGTTCCTCTAAAAACAGAGCCGCCAACGAATTTACTGAGAGCAGCGGCTCCCCCGAACGACTCCCCGTCACCGCCGCCTCCGGCGGCGGAGGAAGACTCGGACTCTTCCAAGAAGTGGGTCATTATCGGAATCGTGGTTGGGGTTGTTGTGCTGCTTCTTGTCTGCGCTGCTCTATTTTTCTTCTGTTTCTATCGGCAGCGACGGGTACAACAGCCATCGCCGACTCCGGCAGCGAAGGCTTTCTCGGGCCCCACCCACAAACAGAGCGACGAAATGACTCTTCCGACGTCGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGTTACGCGATCGAGTCGTTGAGCGTGTACAAGTTTGAGGAGTTGCAGACGGCGACAGTGTTCTTCAGTGAAGAGAACAAAATCAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGTGATTATGCTGCGGTTAAGATTCTCAAAGGGGATGTGTCGAGTGAGATCAACATTCTCAAGAGGATTAACCACTTCAATGTTATAAGATTGTCGGGTTTTTGTGTTCACAAAGGTGACACCTATCTGGTGTACGAGTTTGCCGAGAATGATTCTCTCGAAAATTGGCTGCATAGTGGTAATAAGAAGGACGAGAATTCGGTGTCTCTGAGTTGGGTGCAGAGGGTTCATATTGCTCATGATGTTGCTGACGCGCTTAATTACCTTCATAACTATACCAGTCCTCCTCATGTGCATAAGAATTTGAAGAGTGGGAATGTGCTTTTAGATGGGAATTTCAGGGCAAAGGTTTCGAATTTTGGGTTGGCGAGAGCGGTGGAGGGTGAAGGGGATGACGGGGGATTTCAATTGACAAGGCATGTGGTGGGGACTCAAGGGTACATGTCACCTGAGTACATAGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTTCGTTTGGAGTTGTGCTTTTGGAGCTTCTTTCGGGGAGAGAGGCTGTTGGTGGGGTTAAGAATGGATCTGGGGAGCAGATGCTGTCGGTGACTGTGAATCAGGTGCTTGAGGGAGAGAACGTTAGAGAGAAACTTCGAGGTTTCATGGATCCAAATCTGAGAGATGAATATCCTTTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATGCAAGACCACAGATTTCTGAGGTTTTCATGACTTTGTCCAAGATTCAATCCTCTACGTTGGATTGGGATCCCTCTGATGAGCTTGAACAGTCTAGATCTGTCAGCCAAATTTCTGATAGCAGATAG