Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00735 LG1 10644627 10648133 PREDICTED: homeobox protein SBH1-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   floral meristem determinacy, plasmodesmata-mediated intercellular transport, floral meristem determinacy, regulation of meristem structural organization, regulation of transcription by RNA polymerase II, carpel development, cytokinin biosynthetic process, plasmodesmata-mediated intercellular transport, regulation of transcription by RNA polymerase II, stem cell population maintenance, cytokinin biosynthetic process, regulation of transcription by RNA polymerase II, cytokinin biosynthetic process, regulation of transcription by RNA polymerase II, carpel development, carpel development, floral meristem determinacy, carpel development
Cellular Component   is active in   cytoplasm
Cellular Component   located in   cytoplasm, microtubule cytoskeleton, plasmodesma, endosome, plasmodesma, plasma membrane, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, protein binding, protein homodimerization activity, protein binding, protein binding, protein binding, protein binding, RNA binding, protein binding, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
T/G 10644696 synonymous_variant p.Ala280Ala
G/C 10644697 missense_variant p.Ala280Gly
T/G 10644795 synonymous_variant p.Ser247Ser
T/C 10644807 synonymous_variant p.Ala243Ala
C/T 10644836 intron_variant
T/C 10644907 intron_variant
G/A 10644934 intron_variant
C/A 10645009 intron_variant
A/G 10645066 intron_variant
T/A 10645542 intron_variant
A/T 10645551 intron_variant
T/G 10645665 intron_variant
T/A 10645806 intron_variant
A/G 10645847 intron_variant
G/A,T 10645850 intron_variant
G/C 10645910 intron_variant
T/C 10645923 intron_variant
G/T 10645930 intron_variant
G/A 10645931 intron_variant
G/C 10646021 intron_variant
A/C 10646036 intron_variant
T/A 10646086 intron_variant
T/C 10646091 intron_variant
C/T 10646193 intron_variant
G/A 10646204 intron_variant
A/C 10646326 intron_variant
C/A 10646426 intron_variant
G/A 10646536 intron_variant
A/G 10646638 intron_variant
G/A 10646648 intron_variant
C/A 10646772 intron_variant
T/C 10646782 intron_variant
G/T 10646825 intron_variant
A/G 10646866 intron_variant
T/A 10646886 intron_variant
C/G 10646896 intron_variant
G/T 10646958 intron_variant
A/T 10647021 intron_variant
G/A 10647056 intron_variant
G/A 10647098 intron_variant
G/T 10647156 intron_variant
A/G 10647194 intron_variant
C/A 10647242 intron_variant
G/T 10647258 intron_variant
C/A 10647377 intron_variant
C/A 10647539 synonymous_variant p.Gly111Gly
A/T 10647575 missense_variant p.Asn99Lys
C/T 10647681 intron_variant
A/C 10647722 intron_variant
A/T 10647756 intron_variant
G/T 10647782 intron_variant
A/G 10647794 intron_variant
G/T 10647844 intron_variant
T/C 10647858 intron_variant
T/A 10647864 intron_variant
A/G 10647939 synonymous_variant p.Phe65Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00735.1
MDMMNMETNRKFLSLPLSNNSGAQMRTDRRVPVATNSIAQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL*


CDS Sequence:
>Vu_00735.1
ATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTAGTAACAATTCTGGTGCTCAAATGCGCACTGATAGAAGAGTACCTGTCGCTACCAACAGCATCGCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCAATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCTATAGGGGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAGCCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTCCAGCTTCTGCGCAAGTATAGTGGATATCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCACGACAGCAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGAATCCCAAAAGCAGGCACTGGCAGAATCAACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA


Promoter Sequence:
>Vu_00735::LG1:10648133-10650133(-)
TGTATATATATATATATATGTATATATATATATATATATATGTATATATATATATATATATATATATATATATATATATGCATGTATATATATGTATGTATGTATAAGAGAAAACGTTTAGCAAATCTGTGTTATGACAGTAAAGTTTTGTATAGTGTTAACTGATAAAAATGATCTTTAGTAGATATGTTCCAGCAATTAAACGTTATTAAAGTGATGATAATGAAAGAGCAGTAATAAAATGTGTGAAATGGAGATTAGTAAGATATAAGAGAAAGGTTTTGCATAAAAAGTATGGAGATGATGGAAAAGAAAATGGCATGCACAACACAAAATGTCAAATTGTGAATGATTGGTGTAGGGTAAGGTAAGAAACGCAATAGTGAAAAACTGAAAGGAAGGGACGAAGGGAGTGTCCCACAAAGAGGGCAACATCTTATATAACATGGCCTTCTTTTGCTATGTCTACCTCTTCCAACCCACTTTTCTCCCTCTATGTTTGATTAGATTGACATGACCCCTCTGACATGGGTGTGTCTCTGCATGGATTCCAATTTACAAAACGGTGTCGTCTTCCTCTCATTTTCCCACCCTCCTATTCCTAGTGGCTAGCTAATATATACCAATTCCATCATGCTAAAGCAAAAGTGGTGTTTGTGTGTTGTATCATTGTATGCTGTGTGTGAGATTTTGAGTGTGTGTGAGAGAGAGATATTACATAGATAAAAAAGATCCAATATCTCCCCAAAGGAATATCACATGGGTGATAGATGTCCATGGAATGGACGGTTGATGTTTGATTCCTTTCAATCACACCCACCACCTCTAACCCTAATATTATTATTATATTATTTTCATTACCAACGCCAACAGGTTTTTGCACTTGGTGTTATATTCTAAGCCATTAAGTTTTGCTAGGGTTCCAATCAACCAATCTCGCCAAAAATGTGCACATCTCAATCCATACATAGTACTCACTAAAAGCTTCTAAGATGCTAACAGATTAATCCTTTTTTATATCAAAAGTTAGTTCTTAGTTCCTACACATATCTATGTGTAAATCTGCCAATCTTTTCAAGAATATTTTAATACTTAAGCGTGTTAAAAATGAAGTAGATATATAAGTTAATTAAGAGGCATGGCATATAAGTACGTACTTAGTACTACTAATATGATTAGCATAGGTGGTGATGCATTATTCTGTGATTTAATTTTCTGTGGATGACTGAAGCACTTTTTCTCTCTCCTCCGTTCCATGATGTGAGTGAGAGATAGCCAACAATATAGTACGCATGAACAGTGGTAGTGCATAGACCTAAGAGGGTGAGTTTCACACAGATACATCTTTCATTGGGAAGGAAAACTCTGAGTTAAGTTGCAGAGACACACGTTAACCCTGTGTGTAGCCTCTGTGTCTCCACCTGCATTTAACACACAGCACTGGTAGTGTTTGAGTTTAGGTGTGAGAAAGAGATAGAGATAGAGAGAGAAAGAGAATGAGATTAAGAAGCAACACTGTTGATGCACAGAAGGAGGAAGGTAGACTACACATTCCCAAGGGAGGACTCTGAATCTGAATCTGATTCCACTACCTTTTACAGGCTATAGAGCCAAGAGCCCAAAAATCCCTATTGTTCTGACTGACTATCCATTTGGGTTCTTTGGAGTTTTCTACAAAAAAAGACTCAGATTTTTTAGCTTCATTTCCGGGAGTACTCTCTGGACAATTATATGCAGTGCTCTTTTTGAGAAAACAGTAAGGTGGGGACTAGGAACAACTGATCCAAGCCAAAGAGGTAGAGCTAGATATACAGCTAGTGGTATTACTGTTAATATTACATACAATGTAAATATAAATAAATGCATTATATATGTACCATGTGATTGGTTCTACAAAGAGAGAAACGAAAAGAGCTCTTCATTCCTTTCAAGGGTTTAACGCAGCTTACTTTGTAACTATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTGAG


Gene Sequence:
>Vu_00735(-)
ATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTAGTAACAATTCTGGTGCTCAAATGCGCACTGATAGAAGAGTACCTGTCGCTACCAACAGCATCGCTCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAATTGCCTAAAGGTGATCAATTCTAAATTCTTCTTACTTGCTACATATTCACACAAATACACACATCTTTCCCTTTCTTCCCAACACAAGCTGTCCATATATGTATATGATCATGCACTCTTTAACTTGGAACCTAAAACTGCACTAACATCTTCTCTTTCACGGGTTTTATGAGGATCCAAACCTTCTGTTTTGGTTTTTCATTTCGAGATTCTTTTTTCTTTTTTGTTTTCGTGTGTTGCTTGTTTTGATGGCATGAGTGGAGTGCTTACAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAATGTGAATCAATCAATGCATCATCAGGAAGGACAGGAAGTGGTTCTATAGGGGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACGAAACCCTTTAAAGAAGCCATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTGATTACCTGAATTCATTATCTGTTCCTACAAATCTGTCAGTACTGTAGAGCAATTATGGACGTTTTCTTGGTTGGGGAAGTGGGTGCTGGTGAGCTACCCAGATAGCGTGTCAGAGTGAGAGAAGATCATTAATTTCTTTTCCGTCTTTTCTTAGTACTCGTGTACTTATAATGGTGTGAGGGTCTTGATGTTGGAAGCCAACCTTATTGGTTTAGTTTTATGCTTCACCTTCCTATCAAATTATCAAATTGTCATAGTCTTTCCAGAAGTATATGGTTAACTTCTACGGGACCACAACACCTCATCCTTGTACCCAGAAAACCATGCTCGTGTGGTCTATGTAGAAAAAAGAGAGAAAAATGATTTATTTAAAGAAGCCACGGATCTTTGTTTTTCTATGAAATGACTAGAAATCAAATCTGAGGACAGGTTTTAGTCAGAGTCTACATTAGTAGTGATAAATCATGGTTTAGCTTGCTATCCTCTTAGACTAGTGGTAGTTTTGTGTGTCTCAGAATTTTTAAACCCAGAACTAGTTACTGGTCATAATTCTGATCTTCCCCAGCCATGTTTTCAAAGCTTAATGTTGGTATTAAATATCAATATTAGTTGGTTGGGTAATTATAACCACACAGATGATATAATACCAAAAAAAAGAAAGGAAAACCACACATGCGTCTACTAGATAAATATTTTTTCAGTAAGACTGATGTGATACCAAAAATTATTCTTTTATCATATATTATTTTGCGAATTAGATGAAAAGAGTAGTTAGTCAAATGACCTTTCTCATCACAAATAGTGATTAGTTAAAAAAGAACTTGAGTTAAAACCTTTTACATTGTTTTCAAGATTGTTATGAAGAATGGGTCCAAGGTGTTTGAATTAGGTCAAAAAGTTTGAAAACGATTATGAGTCAAAATTACTGCTTGAGGGGAAATCAAGAAAAATGAGACTTGGTTTTATTATTCTAATGATGAAAAGTTTATTCGAAACCCCAAGCTGCTTAATTAAGTGACCCATTGATTGATAATCTTGAAGGGTTTCAGGGTTTTTTTTAAAGGGATTTTTCTTTTTGGTTCTTGTGGCCTTAGTGTTCCTTATTATTTCACACATACTCAGTGAGTTGTCACCTCTTCTTTCTTCTGATTAATTCCTCTCCTCATTTAGATGCATGGCTCTCTCTTTCAAGGTCCCTTTAAAAACTTAGTAGAAAAAGGAAACTCCTTGTCTTATCTGCTGTGGCCATATGTTTCTTTGTCAATTAAGTTGTTCCTTCTGTAGATTAATTCTAAAAAATCACTGTAAATATTAAGCTTTCATGATTATTTTTGTTATTTCCCTCCTTTGTATGATATATAGTCATGAATGAAAGGGTTACATATTTAGTTATTGGTGAACCATATTTCTTATATATTATAACTTGTTTGAGTAAAGGTTGTATGTACTGAGGCCTTCTATAATATGCAGTTAACCTGTATGCATGGTGAGACCATTAAGCACTGATCAAAAGTTCAGTTGTTTTCTATGAAAGCTTTTCCTATTTAGTAATATAATTAGTGTGCATTAGAGAAAATAATGTTAATCAAACTTAGTTCTGAGCATGTTTTTATCACTTCTTAGGTAATGCTTGTAGTACTGTATAATTCAGAAAAAGAAAAGATATAGGTTTATTTTGTCCTCCTATGATATTATTCTACTATTGCTCCTAATACTTTCATAAACAAATACTTATTAAATGAATAACTAATATATTTAATGTCTAAGATATATAAAATGAAATCGTTCACTATTTTTTTTATCAAGTAAGGGGATTGGGAAGAAGATTTAGAATGTTTTGATATATTATTGTTAAATTAATATTTCTGTGCTACATTTCTGTAATTCGTGATGGATAATTTTCTTGCACGAACTATTTTTCCTAATAGTTCTTAATTTTTCTTCCATTTTTGTTGTGGCTATTTGAAATTAAGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTCCAGCTTCTGCGCAAGTATAGTGGATATCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCACGACAGCAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGTAACTAAGCTCTACATAGGAAACTCTTAATTATTGATTGAAAATCACAAATTATTAATCATTTAAGGTTTTGTCTGTTTCAACAATTTCTAATCTACAGTACAAAGTGCAAGTGTGTTAAAGACAATAACACTCCCTTCTGTACTATGCATTTACAGTGTTTTAGAACGTAGGTTTATAAATTTTCATATCTGATTGCCACCAAAATGCAGACACATTTGATGGTGGTGTTAAGTAGAAAACAACACAAATTCGAATGTTGAAACCTTAAATTATTATGTGGGTAAGGTTTATTTACCATTACATATTCATGACTAATGTTATGGTAATGGTGAATATGATGGGGTTTATATGTAGGAATCCCAAAAGCAGGCACTGGCAGAATCAACAGGCCTAGATTTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAAGATATGCAGTTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCAATGGATGGCATGCCCATGCTTCTTTAA