Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00848 LG1 11871677 11874078 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to auxin, root development, positive regulation of transcription, DNA-templated, response to auxin, positive regulation of transcription, DNA-templated, anther development, pollen development, root development, anther development, anther development, anther development, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA binding, protein homodimerization activity, protein homodimerization activity, protein binding
SNP Position Effect Amino acid change
C/A 11871787 missense_variant p.Gly416Val
C/A 11871792 missense_variant p.Trp414Cys
G/C 11872014 synonymous_variant p.Thr340Thr
A/G 11872211 intron_variant
A/G 11872214 intron_variant
G/T 11872220 intron_variant
G/A 11872388 stop_gained p.Gln291*
T/C 11872517 missense_variant p.Lys248Glu
G/A 11872538 stop_gained p.Gln241*
A/G 11872871 missense_variant p.Ser130Pro
T/A 11873311 intron_variant
A/T 11873315 intron_variant
T/C 11873444 intron_variant
A/T 11873515 intron_variant
G/A 11873687 intron_variant
T/G 11873709 intron_variant
T/A 11873808 stop_gained p.Lys28*
C/G 11873810 missense_variant p.Arg27Thr
A/G 11873817 missense_variant p.Trp25Arg
A/G 11873859 stop_lost p.Ter11Glnext*?
G/C 11873893 intron_variant
G/A 11874070 synonymous_variant p.Gly3Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00848.1
MSGVIGSEEDIGRTSDFTDYKVCVVEEEEDEERDKKERKRDTVVIVATTRRLPSDSGAFADWAATGSSAAAAAGGRAVPVDDLSLGFNAGPAAPAAATGPTSGMWSGANRSINYPEMGMFVVAPASSFHHHHHQQQPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNFLGNRPRGGGIQFWQDQGPHQSHYMKKQQQQGLLDQSNTSSGNLVQTSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTSATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSPMMDPSDVYAGSGGGLLGGSSAYGNPMN*


CDS Sequence:
>Vu_00848.1
ATGAGTGGCGTCATAGGAAGCGAGGAAGACATAGGAAGAACATCAGATTTTACAGATTATAAGGTTTGTGTCGTGGAGGAGGAAGAAGATGAAGAGAGAGATAAAAAAGAAAGAAAGAGGGACACAGTAGTAATTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGCGACTGGTTCTTCCGCTGCTGCTGCTGCCGGTGGCCGTGCTGTCCCCGTGGACGACCTCTCCCTTGGTTTCAATGCTGGTCCTGCCGCCCCAGCAGCAGCCACCGGACCCACCAGCGGAATGTGGTCCGGTGCCAATAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCCTCCTTCCACCATCACCACCACCAGCAACAGCCCCCGCACGACCCCGTCATGGCAGATTCCCTCAACCCAGCCACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTTGAATCCGACAACTTCCTCGGAAACAGGCCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGACCCCATCAGAGCCACTACATGAAGAAGCAACAGCAGCAGGGGCTTCTCGACCAAAGTAACACTAGTTCTGGAAACTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGGGGAACTACGTGCCAGGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACCTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACCTCGGCCACTGCGGCGGTCGCTGGTTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTCATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCCAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGCTTCAAGGAGTCATTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTACCAGGCAGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAATGGCGGAAGTGGAAGCGGAGGGAGTGGTGGGGTGGGGAGAAATGGGGTGTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCGGGTGGAGGGTTGCTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA


Promoter Sequence:
>Vu_00848::LG1:11874078-11876078(-)
TCTCATGCAATGTCTATAAAAAGACAACTAACTTTGGAACTGCTTATATTAGGTTCAAGAAAGAAAAAAAAAAGAAACTAGTAAAAGCTTCTCAAAATCTGTCTCAAAAACTGTCACCACAAATGTGATTATTTTACTTAAAAAAGTAGCTCGAACACTCTATTTACTATCATGCCAGAGGATGAATTTAGATTCCAATATGATTTAGCTTTTCTTTTACAGATAAATCATTATAAACTTAAATTAATCTATGATAAACAAATATATAGATACCTTGAAACATGTACATGCATTAATTGTTACTCAAAAAGTATTTTTTTTATACCATTTCAAATAAAATACTTTTAAGTAATATTAAAAATATAATAATACAGAAAGTTTCATTGATGGAGTTTAATTTTATGTATTATTACACTAGAAAAAGAAGAGCATTCTCTAATCTTTTATCAAAGCTGTTACTTCAAGCATGTCAAGGTATAAAATTCAGTGTTATATTTCTTTGCTTAAATATATATAGTTGGTAAGTAATGAGAAATGTGTTTAAATTGATATGTTTAATAAAATTGTACTAAAGAGTAATTTAGGGTAGGCTTAATTTAATATTTTTGAATTTTTCTTCCCATTTTATTTTAAATTAGTTTGTAAAACATTATATATTATTGATATGGAGATTTTACTTCAATTGTATTGTATGCCCTGATTTTACCTTTTAAACAGAAAGGTCCAACATTTGAGCTATATTCCCCCACTAAAACAAAAATATATTATATATATTGAGTCTCACTGTGACAGAAAACTATACTATTATGTAATGCAATAAATGAAATTTACATTAAAGAACTACTGTGATAACTATACTTTTTTTTTTTATTGAAAAGATTAAACACATATTCTATACATGTAAATATCTTTCAATAACATAAGAGATATATATAATTTTTGTTCTCACCAAACCAGTTATTTTTCTACCAAGTCACATTATTTTATGATAAGATGATATTTTTAACTAGAATTCTATATTCAAATTTAATATCAAATATTAAAAGAGCACATCGGTTTACATATGAAAACACAAATATCAGTACAACCTAATTTCTATAAGCATATTTGAATTAACATTGAAGAAGACTAAAAGTGTAAAAAACAGTTTCCATTTTTACTGTGGAATAATTTTCTTAAAAGTTATATATATATATTAGTCAATATAAAGTGATTATCAGTGTTAACTTTGATTATATATATATAACAATAAACAATTCCTTAAAGTGCACAGTTTTGTATAGTTCTAATCCAATCCTATGTCAGGGCTACAGTGCTTCTTGATATTAATGTATTTATGAATAAAAAGTATAATTGAATACCTTAATTTCTAGTTAAGAACTTGCACACAGACTACACGCAAGAAAGCTAAATCTGAGAAGAATAAGTGGGAAATTTCGGCTACAAGTTATTGTCTACAAAGAATAATATGAAACACCCAACAACCAGCAGCAAAATGATTGAGTATTGTATGAAATGATAATGTGAATTTATTGAGTAGTATGGTAATTATTATTATTTGGTTGAAGATTTGCTGTAGTTAGTTGATAGAGAGAATGCAGATGTATAAGCTGAAAGTGAGAAGATTTTGATATAGAATGATGAAGAAAGAAGAAGAGCATAATGAAAATTAGTGTCATGTGAGGACATGCAGAAAGAAAAGAGAAAGGTTTTGTGAGAGTGAATAAATTGAAATCTGACAAAGACGATCTATAGAAAAGAATTCATAGATATGGGTTGGAAGGACTATCTTAGGAAAAAAGGAAAAGATATGGATGACACCTTAGATTATAGACTACAGTATATAGCTCAGTGCTACTCAACAGCATGCTTTAATTTTATTCTCAAAAATAAATAACATCCAAATACCCTAATTGTGTGCACGCGCCTATCTTTCTCATTAAGAAGATTGAGACGTGAGTGGTGGGGGAGTGACTTCCACGCGCCAGAGCCCACAAGTA


Gene Sequence:
>Vu_00848(-)
ATGAGTGGCGTCATGTGAGTTCTTAGAGACTCCATAAAATTACAAAAACAAGAGAACAAAAGTCTTTATGCTCTCTTTCTTAGCTTCTTCTTTCTCTCTCTCTTTCTACTACTTATTATCAGAGGCTGATTATTGGAGAGAGAAGAAGAGAGGAAGCCATTTTCAGTTTCACTTTCCATAACAAGCGAAAGCCATAGCCCAGAGGAAGCGAGGAAGACATAGGAAGAACATCAGATTTTACAGATTATAAGGTTTGTGTCGTGGAGGAGGAAGAAGATGAAGAGAGAGATAAAAAAGAAAGAAAGAGGGACACAGTAGTAAGTAAGTAAGAAGTCGTTATTGCATTTTCTCATTCACTGCTCCCTCTGCACTCTGCTGGACCCTTCAGAAACTGATTTTCTTTCTTTCTTACTCAGAAACCAAAACTTTTTCTTCCTGTGAAAAAAGCCAAAGTGACAGTAGTAGTAGTAGCCACAATAGCAGCAGCAGAAGAAGCAGAAAACAGAAGAAGCAGAGAAGTTGTTCGTTTTCCCTTCCTTTTCATAGAGAGAGAAAAATCTAAGTTTACTCAACTCTCATCCCCCAACAAACAACAAGATCTCTCATCTCATCCCATCTCATCTCATCTCTCACCAACAAACTCCATCAAAAGAGAACTTCTCTTTTCCCTCCACCAACAAATTCTTTCCCTGCCACAGACCCCACATAGAGAAGAATAACACCCGCATTAGATACACCCGAAATATATAAACCATTCTTAATATATAAATATATATATACACACACACAAACACCACATACCTATTACCTATTATAAGATCTATGTTTCATCTTCTTCAATAGTTCTGTGCTTTCCACACACCATACATCCTACCTTCATCAAAAGTACAAGGAAACTCTATCTTGTTTTTTATTTTATTGTTTTTGATCTGAGAAATCAAACACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGCGACTGGTTCTTCCGCTGCTGCTGCTGCCGGTGGCCGTGCTGTCCCCGTGGACGACCTCTCCCTTGGTTTCAATGCTGGTCCTGCCGCCCCAGCAGCAGCCACCGGACCCACCAGCGGAATGTGGTCCGGTGCCAATAGGTCGATCAATTACCCCGAAATGGGAATGTTCGTGGTGGCGCCAGCCTCCTCCTTCCACCATCACCACCACCAGCAACAGCCCCCGCACGACCCCGTCATGGCAGATTCCCTCAACCCAGCCACTGCACTCGGCGTCGGCGTCATCCCTCTTCTTGCCGCCACGCCGTGTCTTGAATCCGACAACTTCCTCGGAAACAGGCCACGTGGTGGGGGAATTCAGTTTTGGCAAGACCAAGGACCCCATCAGAGCCACTACATGAAGAAGCAACAGCAGCAGGGGCTTCTCGACCAAAGTAACACTAGTTCTGGAAACTTGGTTCAAACCAGTGGCGGCTTAACTGCTTCGGGTACCAGTAGTGGGGGAACTACGTGCCAGGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACCTGCTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACCTCGGCCACTGCGGCGGTCGCTGGTTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTCATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCCAGAAGCTTTGACACTAGCTCTAGCCATCAAGGTTTGTACTTTCTTCTCTCAATGACATTTTTTCCCTTTGGTTTCCCGTGTGTTCTCCTCCACAGTCAGTCACAGTGTTAGATGCTAAATTTTGCAGATTTTCTTGATAAGTATGCATGATAACACACAAACATAAACTCATGCATTGTAGTTTCTTTTGGGTTCATGCTTTGACTAGGAGTTCGGAGGTTGTTTAACTGTGGCTGTTTGGTTGAATTGTGTGCAGATGCGGGCTTCAAGGAGTCATTACCTGGGCAAGTACGTGCACCGGCGGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTACGCGTACCAGGCAGTGGTGAAGATTGGTGGGCACGTGTTCAAAGGGTTTCTGTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAATGGCGGAAGTGGAAGCGGAGGGAGTGGTGGGGTGGGGAGAAATGGGGTGTCTTCTTCTCCGATGATGGATCCTTCTGATGTTTATGCAGGTTCGGGTGGAGGGTTGCTTGGGGGTTCTTCTGCTTATGGTAATCCAATGAATTGA