Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_00891 LG1 12210991 12215621 PREDICTED: transcription factor PIF4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of auxin mediated signaling pathway, regulation of auxin mediated signaling pathway, regulation of auxin biosynthetic process, phototropism, de-etiolation, regulation of auxin mediated signaling pathway, red or far-red light signaling pathway, regulation of auxin biosynthetic process, regulation of auxin mediated signaling pathway, response to low fluence blue light stimulus by blue low-fluence system, regulation of auxin mediated signaling pathway, red or far-red light signaling pathway, red light signaling pathway, regulation of auxin biosynthetic process, red light signaling pathway, regulation of auxin biosynthetic process, regulation of auxin biosynthetic process, red light signaling pathway, red or far-red light signaling pathway, regulation of auxin biosynthetic process, phototropism, red or far-red light signaling pathway, de-etiolation, red light signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein dimerization activity, protein binding, DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, promoter-specific chromatin binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
A/T 12211026 3_prime_UTR_variant
T/A 12211047 3_prime_UTR_variant
G/A 12211172 3_prime_UTR_variant
T/A 12211308 intron_variant
G/A 12211346 intron_variant
C/T 12211480 intron_variant
G/A 12211516 intron_variant
C/T 12211599 intron_variant
G/A 12211621 intron_variant
G/T 12211678 intron_variant
T/A 12211824 intron_variant
A/G 12211874 intron_variant
A/T 12211917 intron_variant
T/C 12212019 intron_variant
T/C 12212221 intron_variant
G/C 12212327 missense_variant p.Gln506Glu
A/C 12212449 intron_variant
A/G 12212451 intron_variant
C/A 12212752 missense_variant p.Gly432Cys
C/A 12212753 synonymous_variant p.Val431Val
G/A 12212824 missense_variant p.Pro408Ser
C/T 12212870 synonymous_variant p.Gly392Gly
C/A 12212891 splice_region_variant&intron_variant
C/A 12212906 intron_variant
T/G 12212908 intron_variant
A/T 12212911 intron_variant
C/T 12213389 splice_region_variant&intron_variant
A/G 12213487 intron_variant
A/G 12213502 intron_variant
T/A 12213507 intron_variant
A/G 12213653 intron_variant
T/G 12213828 intron_variant
C/T 12213857 intron_variant
A/G 12213861 intron_variant
C/A 12213929 intron_variant
A/T 12213976 splice_region_variant&intron_variant
T/G 12213978 splice_region_variant&intron_variant
C/G 12214010 missense_variant p.Glu305Gln
C/T 12214119 missense_variant p.Met268Ile
T/C 12214219 missense_variant p.Asn235Ser
T/A 12214305 missense_variant p.Arg206Ser
T/C 12214347 synonymous_variant p.Pro192Pro
G/T 12214486 missense_variant p.Ala146Asp
A/G 12214514 synonymous_variant p.Leu137Leu
G/T 12214544 missense_variant p.Pro127Thr
T/C 12214565 missense_variant p.Asn120Asp
A/G 12214569 synonymous_variant p.Phe118Phe
G/A 12214602 synonymous_variant p.Tyr107Tyr
A/C 12215234 intron_variant
A/C 12215288 intron_variant
C/A 12215289 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_00891.1
MKNTIPGWDFESDTCLTNQRKPTGLDHELVELLWQNGQVVMHSQTNRKLPGNSSNLRQLQKTTQSNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYKPIRELEEEKFANIFSPGAPHHPPSPSQPLPSIMKSSCAQGLQENLMSAPGFHVPDSSQKINDFGASRKVLNFPHFSAPRNVSSPSQKTAVNLSQSEAREHSVITVGSSHCGSNHIPQDQDVNRVSSNGVWATTNNATLSAEPIDCIHRRFPRSERGKSEMIEPTVASSSGGSGSTGIGRTCSQSTREHGQKRKGTEEEALEEQSEATELKSADGNKLSQRSRRSRAAEVHNLSERRRRDRINDKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHCMPQMGMGIGGPSLPSIHNPMQLPKVGQAMSVTQPQPQPHMPNHNLLCQNPVLGAFNYQNQMQNQCLSEQYARYMGYHLMNSASQPMNALRYGSQAMQHSQTMIAGSNNSSGPMSGTANVANVDDAISGKTGSSTFH*


CDS Sequence:
>Vu_00891.1
ATGAAGAACACTATCCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAAACAAATAGGAAGCTACCTGGGAATTCATCTAACTTGAGACAGCTGCAGAAAACTACTCAATCAAACAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAGTTTTGTTCAAACCTTTTATCTGAGCTACCGCCACCTTGTGAAGTTGAATCTTATTACAAGCCAATCAGAGAATTGGAAGAGGAAAAGTTTGCTAATATTTTCTCCCCTGGTGCCCCCCATCATCCTCCTTCACCTTCACAACCCTTACCATCTATCATGAAATCCTCCTGTGCTCAGGGACTCCAAGAGAATCTCATGTCTGCTCCAGGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGTAATGTCTCTTCACCATCTCAAAAAACTGCAGTTAACCTCTCACAAAGTGAAGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACCGGGTTTCAAGCAATGGCGTTTGGGCCACCACTAATAATGCTACTTTATCTGCTGAGCCTATAGATTGTATCCATAGACGATTTCCTAGAAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGGCTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATAGGAAGAACTTGTTCTCAATCAACAAGAGAACATGGCCAAAAGAGAAAAGGGACTGAAGAAGAAGCACTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGTTCCAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATTAACGACAAGATGAGAGCATTGCAGCAACTGATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTGTATGCCACAGATGGGAATGGGAATTGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCAAAAGTGGGTCAAGCCATGTCTGTCACTCAGCCTCAGCCTCAGCCTCATATGCCAAACCACAATTTACTGTGCCAAAATCCAGTTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCAATGCCTTTCAGAACAATATGCACGTTACATGGGCTACCATCTCATGAATAGTGCCTCTCAGCCAATGAACGCGTTGAGATATGGTTCCCAAGCAATGCAACACAGTCAAACAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTAGCTAATGTTGATGATGCTATTAGTGGCAAAACTGGTTCTTCCACCTTTCACTGA


Promoter Sequence:
>Vu_00891::LG1:12215621-12217621(-)
TTTCTTGTCTTCTTTTCTTTTCTTTTATATTTCTCTCTCTTAGCTTCTTTCTCTTTTTCTTTATTTTCTAACTTTCTTAATTGTTCATCCATCCTTCTTTTAATCTCTCCTTTTCTCTTTGCATTCATGAGCCTTTCAAGTTTTGCTTTAAACTCATCTTCTCTACAAGAGAACTCACCCTTCTTTTTAATGAATGTTTTTCCTTTCTTAATGCATTCTCTTATCTCACACATTAGCTCTTGGTTTATCTTAAATGAAGGGGAACAAAGTTTCTTCTCATGCATGCTTTCAACTCACCAATCTTGAATTGGTGATTTTCTTCCTTTCTCAACTTTAAACTACCTATGTTAATAGACATGAGCAAAGGAACACTAAAGGAGGACAACAAAATTACAACCGATTTGAGAGGAGGCAATAGTGGTGACAACAATGAGTGATAAAAACCCTAAAGCCCTACGATTCAGAAAGAGAAGGTTCTGGAGTCGTAAAGCTTTAGAGAAAGAGGTAGAATGATGCAAATTGAGATTAAGGCGAAACTGTAACAATAAACCACTAATAATTTTTTTTGTAGTGGTTGGTTATGATTATGAATTGTACATAGATTTATTTTGTGGGTTACAATATTTTTTGCATTTATATGACACCAAATCATTTTCCATAAATACTTAATCCTAGATTCAAAAATTTTAAAGATTGCATACTTTTTATAAACTATTCTCTTATATAATTCTTGTACACGAAATAATATTTGTTTAGATAAACTAATATTTTAAATGTGTAGTGTATGTGAATCGATCATTGGTCGACCACTTTGGATCGACCACCTTAGCCAATCTATCTAGGCAGATCAACATTGGTTGACCATTCTAGGTCGACTATTCTGGACCGACCACTCTTGATTGATCATTCTAAGCTGTCATTCTTTGACCAACTACTTTGGTCTTACCACCTTTGATCGACCATCTTTTGGTCAAAATCTTGATAGAGCACCCATGGTCAACAACCTTTGGCCAACCACCTTGACCGAATGACATGACTAATCGATTACAAAATAAAAGTTAGATTCACTCGAATGATAATCACAAATCAACCAACTATTACTCATTAAGGTATGATTTGTCGTGATTAGGGTAACAAAAAAGTAAAAGCTCAAAACAGCTATTATAAATAAAAGTCTAAGGCAAGACTTTCATATACATTCACAACACATGCATCATAGCGGCTAATGCTTTTTCGTACTTTCGTTTACTAACTTTAGCATTGAAATACCTTTTACAATCCAAACAACTTTTTCAAACAACACTTCACTTGAAGATCAGTCAGTTAACATAAAAACCACTTAAAAATTAATCAATTGAGGTAAAAACTGCTCGGAACCTGACCAGTTGGACTCGAAGAATTATCCGGCCTTTCCCGTGAGAATAATAATTTAAGAACTCTTTGACTTTTCCTTGTCGGCCAAGATCAAGTGAGAGACTCAGATTCTATCCTTTCACTCGTTTGAAGTGATGAAAATTTATGAGTTGGGAAGTATTATTCATGGACCAAATTTGAAACAAAAGAAGTGAAAAAAATGGAGAGGTGATGGCTTTGATGAGTAGCTGTCAAGATGAGCATGAAACGAGTGCCACATCTTTTTCCTTTCTTTTTGGGACAATGCAGAGCCTTATCAGTCTCCAATTATATACACCTTGTCCCTGCCACGTGTCACCACCACAATCATCTCTCAGATAGCATCCACCGTGTGCATGGAGAATTGGATTTCCTTGTTCGAGTTTCACATATTCAACACCAAAAACCTTAACTTGCACACCTCCTTTTGAACTGGTCCCGTTTTCATTCACTCCATGACAGATGTGCATCCATGTTTTTCTCGCTCATGGCAAGCATTAAGTACCATTTTTCTCATGGGATATTTGCTTTCTCTCTTTGTACTTCGACATGTCACTGTCCCTCTTCTTGATAAAAACTGTGCTACAACCTCTCTCGCCAAACTCCTT


Gene Sequence:
>Vu_00891(-)
AAGCACAACACGGAGTTTCATCACTTTCCAACTAGCATCTACTTATAGCTTCTATATATTCAACCAGTTACAAAAACCAGCTTTTGCCTTAACCAAAAGACAAAAAAAAAACAAGTCTTTTTACCTTAACTCAGGTGGGGTTCTTCCCTTTTCTTCATATTCCAATCAGTACTTCTTAGTTTTTGTAATTTGCGTCTCTTTGTTTACGTGTATGCGCTTACATAATCTACTAGCTTTCTAACTGACAGTCACAAGTTTTTCCCATTTTGGTGAATCAATGTTTGGTATTTTTTCTAGTTCTTGACTGTATTTGATTATTTTGTTCTTTTTCTGTTCTTGTGTGCGTGTACTTTCAACCGTAATGGGAAAGTAATTTTTCCATTCCGGTTCTGTCTTTGGACATTCGCTTTGGTTCTTTCTGTGGTTTTTCTCCTCTTGGCATGTCAAGTTCCAAACTTTGGCTTTTCTTTCTTTTTAGTATTATTTTATTGTCTTTCACTTTGAGATTTGATTACTGAATTGGCTGAACTATGCAGATTATCTTATTTTACTTTGCTTGTAAAGTTTGTTCGAAGCCAAAAGTTCCCTCTCTCTTGTTCAAGTGGTAGGAACCATGAAGAACACTATCCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGTGTGTTACCTATCTCTGTCAAACCATGATACTGTCCCTGTTAACTTTTCCTTGATTGCTATTCTCTATTTGGTCAATTTATACAGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAAACAAATAGGAAGCTACCTGGGAATTCATCTAACTTGAGACAGCTGCAGAAAACTACTCAATCAAACAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAGTTTTGTTCAAACCTTTTATCTGAGCTACCGCCACCTTGTGAAGTTGAATCTTATTACAAGCCAATCAGAGAATTGGAAGAGGAAAAGTTTGCTAATATTTTCTCCCCTGGTGCCCCCCATCATCCTCCTTCACCTTCACAACCCTTACCATCTATCATGAAATCCTCCTGTGCTCAGGGACTCCAAGAGAATCTCATGTCTGCTCCAGGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGTAATGTCTCTTCACCATCTCAAAAAACTGCAGTTAACCTCTCACAAAGTGAAGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACCGGGTTTCAAGCAATGGCGTTTGGGCCACCACTAATAATGCTACTTTATCTGCTGAGCCTATAGATTGTATCCATAGACGATTTCCTAGAAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGGCTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATAGGAAGAACTTGTTCTCAATCAACAAGAGAACATGGCCAAAAGAGAAAAGGGACTGAAGAAGAAGCACTAGAGGAGCAAAGTGAGGTCATACTCTTCCTCTTTCTCTTTCCATATTTTCCATTTTCCTTCATAATGCATGCTTGCTTTCTTCCTTAAATTTTTTTCTTTTTAACTGATGGTATCTGAAGATTTACTGTGTGTTTGATTATCGTCCACACACACATGCATATATCAGAAGAAACTATTGGTTGCTTTTACTACGTTTTGACGTAAATATTTGGTGAAATTAAATCACTAATTAGCATGTAAAACACCCACTTAGTCCATAATTGAACTATTCATATAACTGACTTTATTACTTAGAAAGGAACAAAACTTTATCGTAGTTGATAGTTGAGCTGTGTTGTGTCTCCGTGTGCAATAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGTTCCAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGGTGAGAGCATGAATATTTTTCTTGTAATTTTCGAATTTGAAACTTGAGTTGTGTGAACTTAACTCTTATTACCAGCTTTTGTTTCTTTATACAGAGAAGAAGAGATAGGATTAACGACAAGATGAGAGCATTGCAGCAACTGATACCAAACAGTAACAAGGTTCGTTATCATAATGCTTGTTGACTTGTCACTATTTTAACTTTTTTTGGTAGAGATGCATGCATCTCCTCGAGAAATGATAGATGACCATCAATGTGCAACCCGACACTTGAACAGATAGTCAGCACAAACAAAATTTAATAAAACAAAACAATAAATTCAATTAATATATACATATTAATAGTGACTTGCAACTGTTTAGTCAGGTTAAAATAGGTACTTCACTAGCACAGTACAGTACACACCACACACCACACACCACACACTTTGTTTGTTTCGAATAATTCTACTTTTCATTAGATTCAATCATGGATGGTGAAAAAGTAACGGTTGTACGTGCAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGCTTCAGGTACAATATATAAATATATATGATGATAATATTCTGGTACTACTACTACTGGTGTAGTGTAGAGAGTATTAATGTGTAAGAAAAGTTGTTGTTGGTGACAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTGTATGCCACAGATGGGAATGGGAATTGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCAAAAGTGGGTCAAGCCATGTCTGTCACTCAGCCTCAGCCTCAGCCTCATATGCCAAACCACAATTTACTGTGCCAAAATCCAGTTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCAATGCCTTTCAGAACAATATGCACGTTACATGGGCTACCATCTCATGAATAGTGCCTCTCAGGTCAATCAAAATTCCATTTTTTACTTTGTTCTTTGTAAAACCTGTCATCTGGTTTTTTAATACATGCATATATTACGTGAAGTTTTGTCAAAACTGCATAAATTCGCAGCAGTTTATAAGACTGTTTCTGCACATGTTCTCACGGTTTTACATTGGTTGTAGTTAATTTTTTATGTTAGCATGTTGATGGTGTTTTCTTGCAGCCAATGAACGCGTTGAGATATGGTTCCCAAGCAATGCAACACAGTCAAACAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTAGCTAATGTTGATGATGCTATTAGTGGCAAAACTGGTAAGGCACACTACTTACACCTAACTTTTTTGGATCTTTCTTCAATCAAGATTTAATAAATTCTATTTTATGAATTCTTATTACAAAATTAAGTAATTTAATTTTATATAAATAAATAAAATAATGTGATTAAAACTTTTTTTTTATCAAAATTTCATGATAAATCATTGTATTAATTATTTCACATCTTAAAAAAATGATGACATTTGAAAACACATTTATTAGTGTCATATGAAAAGTTATTATTAAAAATAAAAAATAACTAATTTTTATGTAAGTTTTTTTTTCTCTACTTTATGTTTTATCTTGAAGGTTTTCCTTTCATTTAAATAAAATAAATAAGGGCTTATGCTTCACTTTAGATTTTTTTATTTATTTTAAAATTAATGGACCAAACGCATATAAAATTAAATTTAATTTTAGTATTTAAAAAAAAGTTTTATTCTTCATGATTTCTAAAACCTTTTTTAATATAAAGAAAAAAATTGTTTTTCATAAGTTATAATAATGTTAAATATCTTTATGTATATCAAATATAATGTCATGTTACATGACCTCTCATAGTAGTCATTTTCTTGACTTAATCAAATACATGACATGTCACTATTGATGCACAATGACAAATACTTTTAAAGTTCACGAAAACTAAGATTAAAAATGTAAAACTACCACCGGATATATTATATTTAATTGAGTAAAATACATTATAACATATTTCGTATAAACTAAAACTAATTACACTGCTTAGCTTTTGTAAAATTAAATAAAAATTATAAAAAGTGCAAAAGTTAATTTTAACATAAGAATACTTTTTAAATTTGTTTTACTTTTATATAAACATTTTTTGGAAAATATAATTTAAACATATTCGTTTCTGTGTTGTTTTCCTTTTCCATTCCTCATTACTTCCTTTTTTTTTTTTATCACTTTCCAGGTTCTTCCACCTTTCACTGAACAATACCTAAAAATGACCAAATTGAGGGAATTAGCTACTGGAGTACATGAATCCTAGAAGTATAAAAATGTGTTCCATTTTATGTAGTTTGAAATGATGCAAGAATCTAAAGTTAATTAATTAACTAATTAATTATGTTTAAATTCTGATAAAATATATCAGTTTATTGTGAGCTAGCTAGGCATGAAATTAGCTCCTAGGGTTAGGATTCATCAGCTTCTGTAATTTTCTATTGTTTGTAGATTGAGATTATAAGTAAATTATCTAAATTGGTGTGCTAATACTTCT