Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_00926	LG1	12509009	12510869	PREDICTED: probable WRKY transcription factor 71	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, positive regulation of leaf senescence, regulation of transcription, DNA-templated, regulation of cell fate specification, regulation of transcription, DNA-templated, positive regulation of leaf senescence, positive regulation of leaf senescence, positive regulation of leaf senescence, regulation of transcription, DNA-templated, regulation of cell fate specification
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/C	12509122	missense_variant	p.Ile252Met
T/A	12509663	intron_variant
C/T	12509672	intron_variant
C/G	12509730	intron_variant
A/T	12509871	stop_gained	p.Leu169*

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_00926.1

MANEKDSFYDPFHYNHHEHQLNHSSNFPFFRDNNSTPIASQNFQGFDHHHHNPSHQRTTFTDCLHGSMDYNTLSRAFDMSCSSSEVLSSIDENPKKPGAGDSAGISGNQSTPNSSVSSSSNEAEALIEEDSTKSQKKDKQPKGCEDEEEKPKKENKPKKKEKKPREPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPYPRGSAATMLSAPPFFGSSYMGSSLPQDFLAQFLPSYTQNDHQNPMFNQNLSNNLHLQPQQQHQQHQFQLPRDYGLLQDLLPSSFPGKQEP*

CDS Sequence:
>Vu_00926.1

Promoter Sequence:
>Vu_00926::LG1:12510869-12512869(-)

AACCCACCGATCAAAAAGTCTTTGTTTTACCAACCTTTTTTCTCAATGCCAAATATCACTTCTCACATTCATTACCCATTCTCTCTCTTAAGGGATCAAACCACCTCTTTGTCTCTCCCCATTCCTACAAAACCCTACCTTTTCAACCCTAATTTTAACTTTACTTCAATGCTACAATTAAATACCAATTTCAATTACAAAATCTATCAAACTCTAATTTAAAAGCTATTTTCTCTATATTTTTGTTTTTTAACTACATCAAAATCACTTTTAATCAAACATTTATTATTTAACTATGTTTTTTTTTTCATTAACATTATTACAAACGAAACTCTATTTAAGAAAACAAAGTTTAACTAATTCGTAGATACTACATGTTTCATGAAATCACATTAGCTAGGGTTTGATACATACGATTTTGACCATCTAATTTGCGTGATTTTGATTGATGTGAATGTGATAGTGTAAGCACATGAGCATATGATAAGGCATCAAAAGGGAATGTGACGTCAAAACCCACTCACCATCATCAACCCATACATAGATGCCCATAGACATAGGCGTGATCAGGAACAGCACTAGTTTTTTTTTTTTTTTTTTCAATTTTTTGCATTATTTAATTTTCATTTTTTATAATATCCAATTTTCATTTTTATTATGCATTTTTCTATTGAAATACTCAGAGGAAGATGAAGAAGAATCATAAATAGCAGAGAACGAATATCTCGTACGTGCCACTCTGCGGTCAAACGCCGGTGCCCAAACCGCGACACGTGTAAGATAAACCTAAAAAATTACACAAGCAAAATGCTTGTAGTCGGAATTTTTGACTAATCACACTACCTTCTTAACAACGTGATAACGACCCTTCTCAAAAAAATAAATATATTTAACAAACACATTAATCGCAATTTTGTTTATACATTAATCTCTTTAATAATACAATACCACGAAACAAAATATCTATGATATAATTAATTATGGGGTTATTTTGCACAAACGCATGATCCCTCACATAATCGATCACATACGATCCTACCAAACCACATACGTGGAGCTCAAAGGAACACACAAAGTAAATTTGAGGTCAATGTTTGAAATTATTTTTTCTTCTCAAAACATTACAAAAGCAAGCCAAAACCTTGTTAGCATTATTCTTGTATTGTTCTTAACATCTAATATCTTATATTATATAAAAGAGAAACCTCTCGGCATGCAAGTATTATTCAACTTGTTATTTTCATTGTCCTTGATTAGATTCAAAACGATTAAATAAAAGGGAGTGCTTTAAATTAAATGAGAAGTCACCATCAACTATGTATAAACATATAAACATATATAGGTAATAAATCTTTCAACCAACTGACTAATAATTATCGAATCAATTGGCTTTTAAAGATTAAAATATTGCCTCATGCTGATTTTTTTATTTTATTTTTGTATTTCTTTTAAAATATGTCAAATTGCTGGATGTAAGAACAGGAAAAAAATAGAGGGACTTGGTATGTTTAAGATTTGAAATGGAAACTAAAGGTGATGAGACGACAACTTTATCGTTCTCTTCGTAAGACAAAAAAAATGTATAAAAGATAATTGATGTAAAATATGAATAGATGTTGAGTGAGAATATACGATGTACTACTATTGGATCAAGAAATCACGCCACATGCAGAAGCAGGTATAAGAATTAATTATAATATATTTTTTGTATTGAAAAAGAAAAAATTGATTATTTGGTTTAGAAAAAAATGAACCACACACTGACTTTAGAAAGATTAAGATAGAGAAACACTCCCCAATTAGCTCCAAACACTAAAGTGAGGGTGCAAAAGTAGAAGGAATAAAAGCAAAGAAGAAAAACAAAGTTCTAAGCCAAAAGCTCCCTTTCCCATAACAAGCAACCACATGGAATTTAAGTCTTAGCTCAAATATCATTCTCAAAGCTACCTTTATTTTTTTTCCTCTTGGCCCTCTTCTTCTTCTCCATTCTTCTCTCTTCC

Gene Sequence:

>Vu_00926(-)

ATGGCGAATGAGAAGGATAGTTTTTATGACCCTTTTCATTACAACCACCACGAACACCAACTCAACCACTCTTCAAACTTTCCATTCTTTAGGGATAACAACTCTACACCAATTGCCTCACAAAACTTTCAAGGGTTTGATCATCATCATCATAATCCTTCTCATCAACGCACCACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACCCTCTCCAGAGCCTTTGACATGTCTTGCTCATCATCTGAAGTGCTCTCTTCCATTGATGAAAACCCCAAGAAGCCTGGTGCAGGAGACTCCGCAGGGATCAGTGGAAACCAGTCAACACCCAATTCATCGGTTTCCTCGTCTTCCAATGAAGCCGAAGCACTCATAGAAGAAGACTCCACCAAAAGCCAGAAGAAAGATAAACAGCCAAAAGGGTGCGAAGACGAAGAAGAAAAGCCTAAGAAAGAGTAGGTTTGATTAGTTTTTTCTTCTTTTGCCCCTATTCCTTTTTTATTTCCGATAGATCAATGAAGGGGAGAAGGTTTTTTTGTCCCCTACAGTTTATCTTTTTCTTCCTTTCAACACACGAATAGGATCTGAATAATTAATATCTCTTATTTTGTAGAGGTACATAGAATTTTGAATTTCTTCTCTGAATTACTATTTACTAATGCGATTATATTATCACTCCGCGTCTTTTCAGTTGTTCATGACTTTTTGTGTTTCTTATGAAATGAATTTGGTCAATCAATCTTGTCTGTTATACTATATATATACAGTGCCGTACGTGAATGCTATATATTATCATGTAGGTTTTGTGTGTGACTAAAATGGAGAAATAGTGTGGAACAATCATGGGAACTTAACCCTAAAATAATTGCTATCGGTTTGGTGAGTTACTTGAGGCACATAGATATATATGTTGCGTTGAATTTGACTGATATTTTGGAGCGTTTCAGGAACAAGCCTAAAAAGAAAGAGAAAAAGCCAAGAGAGCCTCGTTTTGCCTTCTTGACTAAAAGTGAGATAGACAACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAACAGTCCCTACCCAAGGTTCATTATTTTCCAATTTTGAAATTTCTTATCTACCTACGTGGGGCATTATTATCGTTTCAAACCAAAAATGATGAAGCCTTGTTTTTTCTATAGCCGAAAAGAATGATTAAGAGTTGTTGAATTTCTGCACCAAAATCATCATATGTGTATTGAAACACAAAGTATTTCGTTTCCTTTGTTATTGTCATATATATATACACATCGATGTAATGATTCATATCTTTGTCATATTAAGGCTTCGTAACGGCTTGTTTCTTGTAATCTACTATCTAATGATGAAGTTGGAGACACGACATGCAGTACTATATATATGATCATGATATTGTATGAATGTTGAATCTGACAAGACTGGTTATTTGTAATGCAGGAGCTACTATAGATGCACCAGTCAGAAGTGCAGCGTAAAGAAAAGGGTGGAAAGATCATTCCAAGATCCATCAATTGTGATCACAACATATGAAGGGCAACACAACCATCACTGTCCAGCAACACTAAGGGGCAGTGCTGCCACCATGTTGTCAGCACCTCCTTTTTTTGGTTCCTCTTACATGGGCTCAAGCTTACCTCAAGATTTTCTTGCTCAGTTTCTTCCAAGTTATACCCAAAATGATCATCAAAATCCAATGTTCAACCAAAACCTTTCCAACAATCTCCATCTCCAGCCGCAACAACAACATCAGCAGCACCAGTTCCAACTCCCTCGTGACTATGGTTTGCTGCAAGACCTGCTGCCATCATCATTCCCAGGCAAACAAGAGCCTTGA