Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01094 LG1 13887250 13887913 nuclear transcription factor Y subunit B-3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to water deprivation, response to water deprivation, positive regulation of transcription, DNA-templated, response to heat, response to water deprivation, response to heat, response to heat, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, response to heat, positive regulation of transcription, DNA-templated, response to heat, positive regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, response to water deprivation, regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, response to water deprivation, response to water deprivation, response to heat
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, cytosol
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, protein heterodimerization activity, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription activator activity, RNA polymerase II-specific, protein binding, protein binding, protein binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
C/T 13887356 synonymous_variant p.Gly18Gly
C/T 13887581 synonymous_variant p.Ala93Ala
C/T 13887692 synonymous_variant p.Ala130Ala
G/C 13887801 missense_variant p.Ala167Pro
A/G 13887847 missense_variant p.Asn182Ser
A/C 13887890 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01094.1
MADSDNDSGGAQNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKTVAARDKDAAASSSVSGYDYSPSSAAAMMHHPGHVYGSPAFHQVSAAPVMGKPGPGPGPGPNYPAPGRPR*


CDS Sequence:
>Vu_01094.1
ATGGCTGACTCGGACAACGACTCGGGAGGAGCGCAGAACGCGGGGAACAGCGGCTTCAGTGAGTTATCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATAACCGGCGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCACCTTAGGATTCGAGGACTACGTGGAGCCTCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTCGCCGCACGCGACAAGGACGCCGCCGCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCATCATCCGGGACACGTCTACGGGTCCCCCGCGTTCCATCAAGTGAGTGCCGCTCCCGTTATGGGTAAGCCTGGACCTGGGCCTGGGCCTGGGCCCAATTATCCTGCCCCTGGTAGACCCAGATAA


Promoter Sequence:
>Vu_01094::LG1:13885250-13887250(+)
CTATACTCTTAAACCTTCAAATATTAATTAATTAATTTATTTACTAAAATTGTAAAAATCACAACAAGAGAATGTGTTGTTATCAATGATTAAATATTAAGAGGATCGCGTTGTGAATTTACATAATTGAACACGTGAAAATATAAGTAAAAAATAAATAATAAATAAAAATATTTTTAAAAGATAAATAATCAATGTATGACTAAAAATGATTTAATTTAAGAAAATTGAGATTTGTGTTATATGCAAATGAAGATGTGTAATCAAATTGTACTAAAAAAAAATTTATAGAAAAAATACAAAATTATTGTGTGGCACAAAAAAAGAAAGGTTTAATTTCTAATTTGATAATTTAATTTCATTCAAATTTTTAAAAAGAACACTGGTTATTAATTTTTTCAATTTAATTCTTTATAAAAACATCAAACTTGTTCATTTTTTTTAATTTGGTTGGTGATTGCTTTCTTGCTTGAGCATGAATGGTGATCTAAGAAACATAAACCCACGATTAATGGAATGGAATTAAAGGATCAAGAACAATCAAAATGAATGTCTTTAAAAAACTAAATGACTAAATTTGATGTTTTAAAATAACTAAACAACAAAATTTGATGTTTTTAAAAATATAAAGGACTAAATTAAAAAAACCAATAATTATGAAGATTTTTTGAAAATTGAAATAAAATTAGAGGACCGTGTTAAAAATTAATTAAGTTAAAAATAAATAAATGCTTTTCAAAGAGAATGAAATTAAGGACTAGAGACATTTGAAAATAAATTGGTTAGGTTACCAAATATAACAATGCATGAGAAAATAAAAGAGACGAACAAATAATAGGAAACAAAAGGTAAAAGACGTGACATTAAAGGAATGATGCATTGGTGGGTGACAAATGCAAAGTCACCATTAAGTATAACTAAACTATTGCCATCCATTTCCTTAAAGCCCTTTGTCGCTCTATCATTTAACTATTACTCATTATTTGCAACCTCATGCAAGACCTTTTACCTACTGTATCTTTCAAGGTTATTATTGGAAATTTTCCTATTTATTATTTTTGTATCTTTTTTTTATCTTTTAGAAACTTACATAAAATCTTTTTTTTTTACTTTTAATAACATTAGAAAAATCATGTACTATCTACTTTAGGAATCCATGGCATTAGTCATTGCAAATATAATAATTTTGTAATGATTATAATATCCCACATTTGTAAATATAAAGCTAAATAAAAAAAATGTTTGAGTTTTAGGTATTGAAAAAACATGGGAGAAACGTGGTTTAATGGGAATATGACAATGATTTGGGAATGTATGTCTTATATTCTGAGTTTAGATAGATATTTGGAAAATCTAATTTTGCTTCCAAAGGAAGAAAACTATTACTCTTTACCTAACAACTAATTATTCACCTTCTAATAATTTATTATGCTACTTTCCTTGTGGACACTCACACTACAATGAATGCAAAATTATAATTAATTACAAATTTTTTAATCTTAAAATTAATAATTATTTGTTTGCAAAATTATAAAAGAAAATTAAATAACATTAGAAATTTTTTTATTCGTACTCTTTTATATAAGATACTCTTTTATATTTTTTCGTTCCTCAAATTGGAAGAATAGGGTCGAATATTTTATTATTTTGGTATAACAAAACCTTTTTTTTATTTACTCTTTTATCCTTTTTTTTAACAGCGTGAAACGGCATCGAGATCATGGATAAAAGTTTTGAAGTCAGTGTGCTGAGTGGGCGATTAGACAGTCCAAGTCAGAGTGGAACATGTAGCGGATACGAAACCAACGGTCCAGATCGTTGCTCCATCGTCAAATCCAACGGTCAAAAAGCCCTCCGTGCAAGCACACACTTATCGACTAACAACGGTGAAGAAGGGTCCACGTGTCCAGCAGATAGAGGCTTATTAAGCCTCTGATCCAACGGACCCTGCTCATTCCATTCTTCCATTTTCTCTTCACTCTCTCGCTGGAAGTCAACTG


Gene Sequence:
>Vu_01094(+)
GAAGGCAGAGTAGAGTGTTGAATTTGTGAGCCTTCGGAATCCGCGCTGAGTCCATGGCTGACTCGGACAACGACTCGGGAGGAGCGCAGAACGCGGGGAACAGCGGCTTCAGTGAGTTATCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATAACCGGCGAAGCTTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCACCTTAGGATTCGAGGACTACGTGGAGCCTCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTCGCCGCACGCGACAAGGACGCCGCCGCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCATCATCCGGGACACGTCTACGGGTCCCCCGCGTTCCATCAAGTGAGTGCCGCTCCCGTTATGGGTAAGCCTGGACCTGGGCCTGGGCCTGGGCCCAATTATCCTGCCCCTGGTAGACCCAGATAATAGATACACACATAAATCTACGTGGTCCTCCATTTGCC