Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01134 LG1 14160265 14163743 PREDICTED: nuclear transcription factor Y subunit A-1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, embryo development ending in seed dormancy, seed development, somatic embryogenesis, embryo development ending in seed dormancy, seed development, somatic embryogenesis, negative regulation of transcription, DNA-templated, microgametogenesis, somatic embryogenesis, embryo development ending in seed dormancy, somatic embryogenesis, negative regulation of transcription, DNA-templated, seed development, negative regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, seed development, negative regulation of transcription, DNA-templated, somatic embryogenesis, pollen development, regulation of transcription by RNA polymerase II, embryo development ending in seed dormancy, regulation of transcription by RNA polymerase II, embryo development ending in seed dormancy
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
T/G 14160280 3_prime_UTR_variant
C/G 14160321 3_prime_UTR_variant
A/T 14160388 3_prime_UTR_variant
C/T 14160710 synonymous_variant p.Glu290Glu
T/C 14160794 synonymous_variant p.Ser262Ser
A/G 14160815 synonymous_variant p.Asn255Asn
T/G 14160824 missense_variant p.Glu252Asp
G/T 14160849 missense_variant p.Pro244His
A/G 14160893 synonymous_variant p.Val229Val
C/G 14160900 missense_variant p.Gly227Ala
G/A 14160942 missense_variant p.Ala213Val
C/G 14160950 missense_variant p.Glu210Asp
C/T 14161056 downstream_gene_variant
T/A 14161084 downstream_gene_variant
T/C 14161103 downstream_gene_variant
G/A 14161266 synonymous_variant p.Ala139Ala
A/G 14161315 downstream_gene_variant
A/T 14161354 downstream_gene_variant
C/T 14161374 downstream_gene_variant
C/A 14161384 downstream_gene_variant
G/A 14161390 downstream_gene_variant
T/C 14161446 downstream_gene_variant
C/G 14161447 downstream_gene_variant
A/G 14161452 downstream_gene_variant
T/A 14161467 downstream_gene_variant
T/A 14161468 downstream_gene_variant
G/A 14161482 downstream_gene_variant
T/A 14161504 downstream_gene_variant
G/A 14161548 downstream_gene_variant
G/A 14161565 downstream_gene_variant
T/C 14161566 downstream_gene_variant
T/C 14161569 downstream_gene_variant
G/C 14161572 downstream_gene_variant
A/G 14161588 downstream_gene_variant
C/A 14161617 downstream_gene_variant
C/T 14161646 downstream_gene_variant
A/G 14161654 downstream_gene_variant
G/C 14161727 downstream_gene_variant
C/T 14161735 downstream_gene_variant
C/T 14161797 missense_variant p.Arg111His
C/A 14161799 missense_variant p.Arg110Ser
T/C 14161844 synonymous_variant p.Gln95Gln
C/T 14161997 downstream_gene_variant
T/C 14161998 downstream_gene_variant
T/C 14162002 downstream_gene_variant
C/A 14162045 synonymous_variant p.Ser82Ser
C/T 14162133 missense_variant p.Arg53His
T/C 14162168 synonymous_variant p.Ser41Ser
C/A 14162237 synonymous_variant p.Thr18Thr
A/G 14162366 downstream_gene_variant
T/C 14162369 downstream_gene_variant
C/G 14162418 downstream_gene_variant
T/G 14162448 downstream_gene_variant
T/A 14162465 downstream_gene_variant
G/C 14162468 downstream_gene_variant
C/A 14162470 downstream_gene_variant
C/T 14162499 downstream_gene_variant
G/A 14162553 downstream_gene_variant
G/A 14162554 downstream_gene_variant
G/T 14162615 downstream_gene_variant
G/T 14162630 downstream_gene_variant
G/A 14162650 downstream_gene_variant
T/A 14162657 downstream_gene_variant
A/T 14162662 downstream_gene_variant
A/T 14162671 downstream_gene_variant
G/T 14162700 downstream_gene_variant
A/G 14162745 downstream_gene_variant
G/T 14162747 downstream_gene_variant
G/C 14162796 downstream_gene_variant
A/C 14162864 downstream_gene_variant
G/A 14162879 downstream_gene_variant
C/G 14162883 downstream_gene_variant
G/A 14162892 downstream_gene_variant
C/T 14162930 downstream_gene_variant
G/C 14162931 downstream_gene_variant
A/G 14162954 downstream_gene_variant
C/T 14162961 downstream_gene_variant
C/A 14162962 downstream_gene_variant
G/A 14162970 downstream_gene_variant
T/A 14162972 downstream_gene_variant
A/G 14162997 downstream_gene_variant
G/A 14163003 downstream_gene_variant
A/G 14163009 downstream_gene_variant
C/A 14163010 downstream_gene_variant
G/A 14163016 downstream_gene_variant
A/T 14163028 downstream_gene_variant
G/C 14163031 downstream_gene_variant
T/C 14163036 downstream_gene_variant
C/A 14163043 splice_region_variant&intron_variant
A/C 14163055 5_prime_UTR_variant
C/G 14163058 5_prime_UTR_variant
G/A 14163066 5_prime_UTR_variant
G/C 14163071 5_prime_UTR_variant
G/T,A 14163072 5_prime_UTR_variant
G/A 14163082 5_prime_UTR_variant
G/A 14163088 5_prime_UTR_variant
T/C 14163095 5_prime_UTR_premature_start_codon_gain_variant
T/C 14163098 5_prime_UTR_variant
G/A 14163101 5_prime_UTR_premature_start_codon_gain_variant
G/A 14163107 5_prime_UTR_premature_start_codon_gain_variant
C/T 14163113 5_prime_UTR_variant
C/T 14163136 downstream_gene_variant
A/C 14163228 downstream_gene_variant
T/G 14163233 downstream_gene_variant
A/G 14163236 downstream_gene_variant
C/G 14163290 downstream_gene_variant
C/G 14163320 downstream_gene_variant
C/T 14163337 downstream_gene_variant
C/G 14163465 5_prime_UTR_premature_start_codon_gain_variant
G/T 14163469 5_prime_UTR_variant
G/T 14163473 5_prime_UTR_variant
T/C 14163476 5_prime_UTR_variant
G/A 14163492 5_prime_UTR_premature_start_codon_gain_variant
C/T 14163506 5_prime_UTR_variant
C/G 14163522 5_prime_UTR_variant
T/A 14163568 5_prime_UTR_premature_start_codon_gain_variant
T/A 14163574 5_prime_UTR_variant
A/T 14163576 5_prime_UTR_variant
C/T 14163611 5_prime_UTR_variant
C/T 14163616 5_prime_UTR_variant
T/C 14163628 5_prime_UTR_variant
G/A 14163629 5_prime_UTR_variant
T/C 14163742 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01134.1
MQSKSETAKPRSNPHSFTPNTVYSEPWWRGIHYNSAPKAMSGVNASNSSSLERPNADSESSEGQSLSNNEMNEEDDDATKESQPTAPNQSGNYGQDHQAMLHSSSSAPSRRDDCLPHAPQLELIGHSFGYAPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASKHTNKEKDTGAAGPVSLPQSVSSSGLGPVPSEVHERFEKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ*


CDS Sequence:
>Vu_01134.1
ATGCAATCAAAATCTGAAACTGCTAAGCCGAGGTCAAATCCACATTCCTTTACGCCTAACACTGTTTATTCTGAACCCTGGTGGAGAGGTATTCATTACAATTCTGCTCCGAAAGCAATGTCAGGGGTGAATGCATCAAATTCATCATCACTTGAACGCCCTAATGCCGATTCTGAATCCAGTGAAGGTCAATCTTTGTCCAACAATGAGATGAATGAGGAAGATGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGACCACCAAGCCATGCTGCATTCTTCATCATCTGCACCTTCTAGGCGTGATGACTGCCTTCCACATGCTCCACAACTGGAACTTATTGGCCATTCATTTGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGACGAAGACAGGCTCGAGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAAGCTTCAAAACACACGAACAAGGAAAAGGATACGGGTGCAGCAGGTCCAGTTTCATTGCCACAGTCAGTTAGTTCATCTGGGTTGGGACCAGTACCCTCTGAAGTGCATGAGAGATTTGAAAAACACAATTACGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGTGAGAGAGTAGAGGAGGGAGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA


Promoter Sequence:
>Vu_01134::LG1:14163743-14165743(-)
ACTAGGACCTCCTACTACTCCTCACCACATGAATCAATCCTCTCTACTTGAGAATGAAAGACCATTGGAGCGTCAAGAAAACCCCCAAGACTGAGCTACCATGCAAATCATTCTAAACATTACTAAGGCACCACCATGAATTTTCTCCTGGAAGATCATGGAATTACGTCCAACACTATAGGGCACACCATGTGACCTCCCTTTGAGATCCATGGAATTACGTCCATCAACCATACTAGTACAAGCACATACTTTTAACCACCAAACATGTTTCACATACTCACATACTTGTAATATAATCACATTATCACATCATACTATGCATTGCAATCATCCCACACACTTAATTCAACCAAAAACAAGAGCAAAAGAGGCTGGAACCGAACACTATGAGCTTTGGCCGAGCACTTAGGGCTTTGGCCGAACGGTATGACTTTGGCCGAGCACTGAGAGCTTTGGCCGAACGCTACAAAATTTGGTCGAACACTACAAACTTTGGCCGAACACTATTGAACTTGGCCGAGCACTTAGAGCTTTGGCCGAGCACTTAGAGCTTTGACCGATCGGTACCAAGACCGAGCACCATCAAGACCGAACGCTACCTATGACCGAATGGTTTGAACTGGTAAGGTTAAAGAGACCGACCACTCAAAGCATAATAAGGTCGAACGCTAAGTCAGGACATGACTGAACGGTCAAATCAACACCTGACCGAACGGCCAAATCAGGGCATGATCGAACGGTCAGCTATCGCGTTCTGCAGAATGCAGAATTGCAACCAAACTCCAGAGTACCATTTCTAGTCATTTTTACTAACTTTTAACACCCTTAATTCTTGTTTTATACTTAATTGGACTTATCTAAATTTTAGAGTCACCTGTATACAATGCCGCAGTCACTTGAGCACCACCTAGACCAACATGCAACGAGAGAATGTGAGGGAATGGTAGAGAGAATGCAGAGAAAAGAAGAGCTGAACTTTTAGAAAGAGAATGGAAAGCTGAGATAAGAAACTCTGATTTTTTAAAGATCCCTTCCTAAGGTCTTATTGCCCTTAGTTTTATAGACTTGACTGCCTCAACATAAGGCTCAACTGTCACAATCTTCGACCCTTACATGATGTATTGTGTTAGACTTAAATATTATTATCTGAATAGTTAAATATAAATTTATATTATTATAAAATATATTTATTATAAATTTGAGGACAACATAATTTATTTGTTCAAAATTGTGCATATATTGTAAATTTTCAATAAATAAAAAAACATTTATACCTTTAAACCGAGTTAAATACGCTGAGTTAGTAGGTTGACAAATAGGCTATAACTTATTTATTGAAAAAAATCTCATACTATGAAATTACCATATTTGCATCTTCCATTCATTCTCATTATTTTATTTTTGTTTTGTTTACTATAACTTATTTATTTTAAATTAAATTTTTATTTTTTGTGAGTATAATTGACTTTTTATATTTTACGTGTCTCTAAACAGCACCTTAAAAAGTGCTGTCACTTTTTTGAAGCAATATATATTGGGCTTTGGAGTGAGAAAATTGAAATGTCTATGAGCTGTGAAGTGGTAATACGTGTCCTCCTCGCTCCTCACTGGCAGGTAAGGCTTACCTTTTCCCATTTTTTTAAGTAAAGAAATAAAATTAATTTTATTTTTATGGTGGAGAATCAATAATTCATCCGAGGAAACTAAAAAAAGGACACGTGGTTAACTTTGCTGTCAATTCTCGGACGGCGTGGGTCCCACTCTCAGGCCACGCGTTCACCGGATTCTGCTACTCAAGTGCGTGTCACGTGCCCCAGAAATTTTGTTTCTTTTTCCTTCCTCCGAGGCTTTGATACCCTCACCCACCCCTCTCACTCCTACCAGTTTTCTCCTTTTCCCTCCCTCTCCAATACACGTGTCCCCTCCTCCTGCGTGATGTTGACGTCATCATCGTATGTCACTTGAAATTTAAACCCCAACACTGGACTAAACTTTTT


Gene Sequence:
>Vu_01134(-)
AATGTTGTTAACATTTTTTTATTTTCATTTTAACTCTGTTATTGTTTCTCACTAATTTCTTTATCTTCTTATAATAACAACAACTCAAGTGAGATATCAACATACACCACCCCACATTCTAGAGACAGCATAGTTCTTTCATTTGTCTCTCACCTTCCCAATTTCCTTGATCAACAGGGGAATTTGGTCTAATTCTGATTCCTTCTCTTTGAGGGACTTTTGAGGATTAGGGTTTTGGGGGGTGATTCTTTCGCTTGCTTTTGATTAAGGCAGTCTTTGTGTGATCTGAATGTAAGGATTCTGTGTCTGCATGTGTGAATTCTGTCAAGGTATCACCTAGACCTTTTTTTCTGTGGCATTTTATGTGGGAGGGAAATTGTTTTTGGTTGTTAATGAGGTAGAATTGGGATTTTATTGCATGCAGTAAGATCAGCTAAACCTTCAAATTTTGGTGATATTCTATGAAATCTACCTCATTAACTAGTGTTTATCTGCTTGTTAGACTGATATATAAGTTTGCATGTTGGAATATCCCCTGTTACTATCCCCTGTTACTGTTTGGTTTTTGTGACTAAATAAGGCAGACACCAATGTTGCTGAATGTCATGTTTTTGTTTTGTAGGGGCATTTGGTTGCCGGGCACTGATTAAGAGTTCAAAGACTTTAGCTTTCCTTAGCTCCTGCTGAATATCAAGTAAGAGCAAAATAAAAGCTTTGTTTTAAGCATCTGTTTGTCTTAACAAGTATTGTCTTTTCATGATGATTTTTAATAGCTTTGAGTGGGGGTATTTCAATTTATTTTAACTTGTACACGATGTTATAATTTTATTCATATATGAAGCTTTGAAATGCTTTTATGTGGCTCTACTATATCAATCTTCATTTTAAGCGGTTGCACTGGTTTTTAGTATTTACATTGTTGGAAATATACTGTTTTCCTAACCTTTCAATTATATGAATCAGTCTTGAGCATTTGTCATTACCCTAAAAAGAGTGCTTGCATTTTCTTGTTGTATCAAGTTAATGCTCTTACTTCACACATTCGCTGCACTTTTATGATTAGTGATCTATTTGTAAAAAATAAAAATCAGCTCGGGGAAGCCATAAATAAACCTTCCCCATAGTTATCATCACAGGTAACGACACAGTTGTTTGTCTTATTTCACTTGTTACCATGTTTCTTGTGAGCCCAATTGTATTTGGTACATAAATTGACTTCATTAAGCCTTTCAATCATTAACAAAGCTGTGAATTGTGCTTTGATATCATGCTTGTCAAATTTTGCCAGCACTTCAATGTTTCTAGACAACTATGGCTATAGTTTTGATTTGATCATGTGAATCTGTTTCACAAATACCTTATTTATCCATTCTTATTTATCTTGCCTTTGTTTTAGCATGAGGAATATAATTTTCATGTTCAATATACTTTTGTAGGGATCTGGAGATACGGCATGCAATCAAAATCTGAAACTGCTAAGCCGAGGTCAAATCCACATTCCTTTACGCCTAACACTGTTTATTCTGAACCCTGGTGGAGAGGTATTCATTACAATTCTGCTCCGAAAGCAATGTCAGGGGTGAATGCATCAAATTCATCATCACTTGAACGCCCTAATGCCGATTCTGAATCCAGTGAAGGTCAATCTTTGTCCAACAATGAGATGAATGAGGAAGATGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAATCAGGTGCTATAGATTGTATTATAAAGAAAAAAAAATACAGACATTGAAATCAGGAAAGAAAGCATGTGCTTGTATATACAATGCCTGAAATTATGTTGATGTGATTTTTTTTTCTTTATTTCCAAGCGTTACAAGCTTACTGGAATACTATTCTTTTCTTGGCAGGAAATTATGGACAAGACCACCAAGCCATGCTGCATTCTTCATCATCTGCACCTTCTAGGCGTGATGACTGCCTTCCACATGCTCCACAACTGGAACTTATTGGCCATTCATTTGTAAGCCTTGCTCTCATCATATTATTTTTTATCACAAAGATCATAGCTTTATGACTATGTTTAATAGCATTAATTTTTGCTGTTCTTACTTGTGTATGGTGAAAATTCTATAATTGGAAAAATTATAGATCCTTTGCATGCTTTTGTGATGGATCCTAGTATGCTTCAAATTCTAAGCACGTGCTTCAAATCCTTACTATGTTACTACCAACAGTTCGATGTCAGACTAGTTAGTGTTCTAACATCATACAAACTTTCCAAACTCATTGTTTTGCAAATCTCATAAATCATTTTGGTGAGAATGTAATTTGTGCATAACCCTGAAGGATAGATTCTTGCTATATGATAAAATCGCTATTTGGTCTATTTTGTGTTTCAAACTATGGTGGTTTTTGGAGGATATCATTGCGATGATAAATAACCTTATTATATTTTTTTCCTATTAGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGACGAAGACAGGCTCGAGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGGTACAAATGAGCACTGGTTAATGCTTCTGTATGCATGTTTCTTACTCTAAAGTTCTGTATTTAATTTCCCCCTTTGGGTATGCTAACCAGAGTTTCTTCGCAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAAGCTTCAAAACACACGAACAAGGAAAAGGATACGGGTGCAGCAGGTCCAGTTTCATTGCCACAGTCAGTTAGTTCATCTGGGTTGGGACCAGTACCCTCTGAAGTGCATGAGAGATTTGAAAAACACAATTACGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGTGAGAGAGTAGAGGAGGGAGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAAATCACTGCGTCGGTTGATGGTGAGGTTGGTGTATAATTGAGGGAAGTAGTTGTTTGAGTCGAATACCATAAACATTGGCAATTTGCATGCCGAGCGGCAAATCATTCTTGGCTGTGTTTATGCTGGTCATCATATGGGGAGAAGAATGATTGATTGGACCATGATGTTTGTCTTGTTGAACTCAACCAATCCTTCGTTATATTCTCTATTTTGTTTTCTATTTTGTACAATGTTAAGCAGTTAGGAAAGTCAAGCCAACGGATTAGAAGACTTTAAGGAACAAACTGTTTCTTCGGATTCACTTTCTGGCGGCTTTATTTCATGTTATCTCCGCTTGGTTGTTAATGTTGAGTTTGAGACATCATATTAGTTTAAGTGCACAGTTGTATTCTTATAAGAGTAGCATTTTGTC