Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01171 LG1 14520379 14523785 PREDICTED: scarecrow-like transcription factor PAT1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, red, far-red light phototransduction, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, red, far-red light phototransduction, red, far-red light phototransduction, callus formation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, photomorphogenesis, photomorphogenesis, regulation of transcription, DNA-templated, red, far-red light phototransduction, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, red, far-red light phototransduction
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, cytoplasm, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/T 14520459 5_prime_UTR_variant
G/C 14520521 5_prime_UTR_premature_start_codon_gain_variant
C/A 14520552 5_prime_UTR_variant
T/A 14520600 downstream_gene_variant
G/A 14520642 downstream_gene_variant
G/A 14520818 downstream_gene_variant
G/C 14520842 downstream_gene_variant
G/T 14520877 downstream_gene_variant
C/T 14520917 downstream_gene_variant
G/T 14521060 downstream_gene_variant
C/A 14521075 downstream_gene_variant
A/T 14521303 downstream_gene_variant
T/C 14521395 downstream_gene_variant
A/G 14521515 downstream_gene_variant
T/C 14521520 downstream_gene_variant
A/T 14521607 downstream_gene_variant
G/T 14521810 5_prime_UTR_variant
C/T 14521888 5_prime_UTR_variant
T/C 14521893 5_prime_UTR_variant
C/A 14522142 synonymous_variant p.Gly65Gly
C/T 14522376 synonymous_variant p.Tyr143Tyr
T/C 14522612 missense_variant p.Val222Ala
A/G 14522649 synonymous_variant p.Lys234Lys
G/T 14522948 missense_variant p.Arg334Met
C/T 14523161 missense_variant p.Ser405Leu
G/T 14523650 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01171.1
MQASEQHRSSSMYYQPLQQIEAYCLPQYGNLNQQLYYHGGSHGTHFSTPSSSELYCTLESSSVAGSFTLYNSPSTVSFSPNGSPISQHDSQSYPPDQYHSPENAYGSPLSGSCITDDLSSFKHKLRELESVMLGPDSDNLDSYDSAISNGNNFASLEMDSWRQTMVAISSKNLKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRIHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNRYRLEERDGALYLGWMNRDLVASCAWK*


CDS Sequence:
>Vu_01171.1
ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACTATCAACCATTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATGGGAACCTTAATCAACAGCTATATTACCATGGTGGAAGCCATGGAACTCACTTTTCAACTCCAAGTTCTTCTGAACTTTACTGTACATTGGAATCATCCTCTGTAGCTGGCAGTTTCACCCTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGCCCCATATCACAGCATGACTCTCAGTCATATCCACCTGACCAGTATCATTCTCCTGAGAATGCCTATGGCTCTCCATTGAGTGGCTCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAACTGAGAGAGTTGGAAAGTGTAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTACGACAGTGCCATAAGCAATGGAAACAACTTTGCTTCACTTGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTAGCAAAAACCTGAAGCACATCCTTGTTGCATGTGCCAAAGCCATTGCAGACAATGATTTGCTTATGGCACAGTGGCTGATGGATGAACTAAGGCAGATGGTGTCAGTTTCTGGCGATCCAATTCAACGGTTGGGAGCATACATGCTGGAAGGACTTGTTGCACGATTGGCTGCTTCTGGGAGTTCGATATACAAAGCTTTAAGATGCAAAGAACCAGAGAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTCGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGAAAGGGTGCACATAATCGATTTCCAAATCGGTCAAGGAAGCCAGTGGATAACTTTAATTCAGGCTTTTGCAGCTAGACCTGGAGGGCCACCCCACATTCGGATTACAGGTATTGATGACTCACAATCAGCTTATGCCCGCGGTGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCGTTTGAATTTCATGCTGCAGCTATCTCTGGCTGTGATGTTCAACTACACAACCTTGGAGTTCGACCGGGGGAAGCTCTGGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACACAGAATCACAGGGATAGGTTGTTGAGGTTGGTTAGGAGCCTATCGCCGAAGGTGGTGACACTTGTTGAGCAGGAATCTAACACAAACACTGCTGCATTCTTTCCTCGTTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTTACTCTTCCTAGAATTCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGATTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAGGTGCTTGGGAAGTGGAGGTCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCACTGGTGAATGGTACCATCAAGAAATTGCTTGAGAACTACAGTAATAGATATAGACTTGAAGAGAGAGATGGAGCTCTGTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGCGCATGGAAATGA


Promoter Sequence:
>Vu_01171::LG1:14518379-14520379(+)
CCTTTAATGTAAGCTTCTCTTTTCTCTCTCCAAAGTCTTTCAATCTCAACCATTATTCACTCAACACTTATATATTTATAAACACTTTTTTTTAAGAAATATTAGAAGCACCTGAAATAAAAAGTGAATCTAATCAAATCAAATTAACATGTACACAAGATCCAATGCAATGAAAACTAATGAATACAACAGATTTGTCACTTCCCAACCTAGATTTTGCTGGAGGATGAGCATGCTTTTAATTGCAGACATGCACTTTGTGTAAGTCAGGCTATGCTTACTGATACATCTAAAGTGAAAAAGTGTCTAAAGTGATAAAGTAAGAGTGTATTTACTCAGTTTTAACTAGAAATACCTTATGATTACATGCTATTTCAATTCTAATCAAGAGTAGATAAACCACTTTATATACTTTTTCACTTGAGGGAAGTTGAATTCATCGTTTCTACACTGTTTGTTACTGTGTTAGAAACATTTAATCTGCTGCTAAGTTGGGTTACTGTGTTACACTGTTTTTTCCTATAACTCTATATAGGTTCTGTGCTCTTTGGTTCCTCTTACTTTGTATGTTTGCATATCATATAGGAGAAGTCAGAAATCATTGTACTTCTGAAGTTCAAAACATATTTCCAACTTTTATCAAAACATAGTGCAAAAGTAAGTTGGTCCATTTTATTTAAATGACCAAGAATGATAGTTTTGCTGGGATCAAAGGGTGACTGTTTGAAAATTAGAGAACAATTAGGATATAATGTTTCCTTTTCATGAGATCAAATACCATATTGCTTTACATATTTTCTCCACAGTGTGAATCCTCTTCCAGAATTTCTATATTGATTTCTAGTTCTTATTTTATTGCTTTTCATTTGCTGATATCCTGCAAAGAAATATGCTACTGTAGTCCCCTGCATTCCTTTTGCAGACTGTTTGTTGAATTTATCTTTGGAACTTAATCTGTGATATTAAGGAAATTAATGTTAAAATAAAGGTAAATATCTTTTTAAATCTTAATTTATGGTGTTTAGTTTGAGGTACGATCACCAATTTCATGTCAAACTGTTTCTCTGTTATTTTTCTTTTATTTTCAAACAACTTACTGAAACAGTGTTTTAGCTAAACAATCACTCTTAAAATTTCCCAAATCAAAGATTGGATTTTTCTGGTAATTTCTATATAATGCAAGTAGATGCATCTTTTTCAGCACAAAGGGCTAATGTAGTGGTATAGAAAATTGTATATTAAGCAGTTCATACTCTAATTTTTAATGAACAGTTTGGGGACCCCAGTGGTGTATCCTCCATCTATGATGAACAGAAACTCTCAAATAACACTAACAATACAAGATTTTATAGCTAAAATAATAGTAAATTACAATCCATTGATGAGTTGAGCATGCCATTTATATGATGTCATTGCCCATACATGTCGTGCAAGAGATATCTGTCCACCTAAACCACCCTGGATGGATGCACTTGCAAACCTAGTCATCATCATCATTGTATATATTGTTTACGTATAATACTGAACATTAATCTATATAATAATCCTTATTATATGACACTATTCAGAGTATTCAATACCCTATTATCCAGCAATGATTTCCACTGTGAAATCAGAGAAATTTATGAATATCTTGTTAATCATTTGTCTAATTCCTTATATAGATTAAAATCATATCACATGTAATCTCTTCCTAATAAATTTTTTCGAAAAAAAAGTCTACTGGTGATATGAAAGTCGATTGTGACCATAGTGGAAGAAACTCAGTTGTGTGGTATAGAAAAATTATACATACAATACCAGTATTTATTTCTTTTACATTTAATACAAGGTTTTTCTTAGAAAAGAATGATAGTAATGGTCTTAGAAAAAATGAATGGGAAAGTAGATGGATTGAAAAGGAAACTGAAGTGAAGCAGCTAATGCTAACTCACTCAAAGAGGGCCACGTGTGATGTGAGACATAATTGTAAGGGTGGCATTGATGGCTGTATTTGACCA


Gene Sequence:
>Vu_01171(+)
AAGCAAACTGATAGCAAAGGGTGCTCTTGTCATTTCAATAAAAAGAGTTGTCACCGAGCATCATATTAACACCAACCAATGCTTTCTGAGTAGTTTTTTCTTCACTGGAATAGCCTTGTCTTCTACTACACTCCCACATGCTGTGAGATTCTAGTTCACTGTGCTTTTCCAACCCTGCAATTTTCTCAAATCTTGGTAAGGAAATGGTATAATGTTCAAAATCTTCTCAAACTGAAGCCATTGGCTTCATAGTTTCCTTGAAAGTTTGCTTCTGGGTTTGTCTTCACTTATTTACAAGGGTTTGTGAAGTAAAGTATATTAAGCTCATACTTCTTGCCCTTGAACTTTAAGAAGTTCCAGTGTTTTAGCATTTCTGTTTTTTATGTCAGGATGTGAATGGATTTTACAGAAATGTATATCTCCCTTTTTCTAATCTTTAGTTGATTCTTAACCAAATCATGCAGTGAGAAGAGAACTTTAATTTCCAGTTCTAATCATGAGTTGATGTGCATTTTGTTGTTAACCTATGTGCTTATGACATAAATTATGATTTATGTATAGTGATAGCTTGATTAACCTTGCCTTGTATAGGTGAATATTGGCCAAAGAATATCTGTGTAACTTCATTAAACAACAAAAGGAAAGTACTTCCCGTTTGCTGTTTCTGCTTTTTGTGTTTTAGACATCTGTTCTGACCGAAATTTAAAGCTTTCTTCTTTCAGCTCAGCCAAATTCAAAGTACTGAAATGAATTAATCAAGCAGAATCGGAAATTTTCTTCACAACATTATATTTTCATTAGATTTGGCTGAGGATTTTCCCTTAAATTCTGCAGTTGTTTCTAATGGCTAGCTTCATTCATGAAAACTAATTCAACCATATGTGGGGCCATGTACATTTTTCGCGTCTTATTTTTTACATTTTTATTGAAATCTGATGTTCATGTTTTGATAATCCCCTTTCCCTTTCCGAATAAACATGCCCTTCTCTTTTGTTTAATTCTGGAAATTTCAAAAGTATTTTTCTTTCTTTCTGGCGGAGAAAAATCTGTAATCTTTAGAATTGGTCAACTGTGATGTTTCTCGGAAATTCTCACTGATTGATCCCAGTTTGTTCTTCATTCTTTTGTGATAAAAAAAAAATAAGCAGATTGTTTGACTTGGTATGAGAGTCAAGTTGATAATACACGGTAGAAGAAGAAGAGAAGAAACAAAAAAGTAGACTAATGTAAACAGTGCGCTGACTCTAAACTCCTAATTTCTGTAGGACCTGAAAAAGTTGTCCTTAAATTCCGTTCCCATGAACTGAATATTTGAGCTGTAGCTTTCTCTCTGTTCTATTCATTGTATGTAAGTTGCAAGCTGCAACTGAATATGATAAAACTGATGCTGGGATATTTCCACGCAGACAGAAGATCATGTTAATAAGAAGAGAACCTGAACAATTCAGGGCCATATCTGTTATGTTGCAATGAGGATCAATTAACAGCTATCTCTAGGCCACTATTGTCCATTGTTCTGCTTCAAGGTACAATCTGAAAGAGATCACTTGAACTACTACAGCAGTTATAATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACTATCAACCATTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATGGGAACCTTAATCAACAGCTATATTACCATGGTGGAAGCCATGGAACTCACTTTTCAACTCCAAGTTCTTCTGAACTTTACTGTACATTGGAATCATCCTCTGTAGCTGGCAGTTTCACCCTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGCCCCATATCACAGCATGACTCTCAGTCATATCCACCTGACCAGTATCATTCTCCTGAGAATGCCTATGGCTCTCCATTGAGTGGCTCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAACTGAGAGAGTTGGAAAGTGTAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTACGACAGTGCCATAAGCAATGGAAACAACTTTGCTTCACTTGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTAGCAAAAACCTGAAGCACATCCTTGTTGCATGTGCCAAAGCCATTGCAGACAATGATTTGCTTATGGCACAGTGGCTGATGGATGAACTAAGGCAGATGGTGTCAGTTTCTGGCGATCCAATTCAACGGTTGGGAGCATACATGCTGGAAGGACTTGTTGCACGATTGGCTGCTTCTGGGAGTTCGATATACAAAGCTTTAAGATGCAAAGAACCAGAGAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTCGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTATGAAAGATGAAGAAAGGGTGCACATAATCGATTTCCAAATCGGTCAAGGAAGCCAGTGGATAACTTTAATTCAGGCTTTTGCAGCTAGACCTGGAGGGCCACCCCACATTCGGATTACAGGTATTGATGACTCACAATCAGCTTATGCCCGCGGTGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCGTTTGAATTTCATGCTGCAGCTATCTCTGGCTGTGATGTTCAACTACACAACCTTGGAGTTCGACCGGGGGAAGCTCTGGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACACAGAATCACAGGGATAGGTTGTTGAGGTTGGTTAGGAGCCTATCGCCGAAGGTGGTGACACTTGTTGAGCAGGAATCTAACACAAACACTGCTGCATTCTTTCCTCGTTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTTACTCTTCCTAGAATTCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGATTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAGGTGCTTGGGAAGTGGAGGTCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCACTGGTGAATGGTACCATCAAGAAATTGCTTGAGAACTACAGTAATAGATATAGACTTGAAGAGAGAGATGGAGCTCTGTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGCGCATGGAAATGAGACATGGGTAATATGTGACTCCTGCAAGTTTGACAGGGTGCAAAGAAGAACCTATGCCTCTTCATTTTCTGTTCCATTACTGTAAAAGTTAATGAGAAAGTTGTCGACATTAAATCCAATCTAATAGTCTATTTTCTGTTTCAAGCATTTCCAAAGAAATTGTAGGTACAAATTTTCTCTTTAAGCAATATTAATCTGTCATTTCA