Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01244 LG1 15087832 15090746 Protein FAR1-RELATED SEQUENCE 5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   vegetative to reproductive phase transition of meristem, organelle organization, vegetative to reproductive phase transition of meristem, vegetative to reproductive phase transition of meristem, regulation of flower development, regulation of flower development, regulation of transcription, DNA-templated, regulation of flower development, vegetative to reproductive phase transition of meristem, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, zinc ion binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
C/G 15087862 missense_variant p.Glu331Asp
T/A 15087876 stop_gained p.Lys327*
G/C 15087899 missense_variant p.Ser319Cys
C/T 15087917 missense_variant p.Cys313Tyr
A/G 15087955 synonymous_variant p.Thr300Thr
C/T 15087961 splice_acceptor_variant&intron_variant
G/A 15088008 downstream_gene_variant
T/G 15088031 downstream_gene_variant
T/A 15088121 downstream_gene_variant
A/G 15088127 downstream_gene_variant
C/T 15088133 downstream_gene_variant
T/G 15088161 downstream_gene_variant
C/A 15088266 downstream_gene_variant
T/C 15088275 downstream_gene_variant
C/T 15088277 downstream_gene_variant
C/A 15088304 downstream_gene_variant
G/T 15088331 downstream_gene_variant
G/A 15088378 downstream_gene_variant
A/G 15088413 downstream_gene_variant
T/G 15088455 downstream_gene_variant
C/T 15088622 missense_variant p.Cys274Tyr
A/T 15088654 missense_variant p.Asn263Lys
C/T 15088677 missense_variant p.Gly256Ser
G/T 15088681 missense_variant p.Phe254Leu
A/G 15088719 missense_variant p.Cys242Arg
C/T 15088724 missense_variant p.Arg240Gln
C/T 15088740 missense_variant p.Val235Ile
A/G 15088764 stop_lost p.Ter227Glnext*?
C/T 15088958 downstream_gene_variant
C/T 15089036 downstream_gene_variant
A/G 15089068 downstream_gene_variant
C/T 15089073 downstream_gene_variant
T/G 15089105 downstream_gene_variant
A/T 15089179 downstream_gene_variant
G/A 15089204 downstream_gene_variant
G/T 15089288 downstream_gene_variant
C/G 15089426 downstream_gene_variant
C/T 15089433 downstream_gene_variant
G/C 15089441 downstream_gene_variant
T/A 15089494 downstream_gene_variant
G/C 15089500 downstream_gene_variant
C/T 15089508 downstream_gene_variant
G/A 15089570 downstream_gene_variant
T/G 15089578 downstream_gene_variant
T/A 15089583 downstream_gene_variant
G/A 15089612 downstream_gene_variant
T/G 15089616 downstream_gene_variant
C/A 15089645 downstream_gene_variant
G/A 15089689 downstream_gene_variant
C/T 15089692 downstream_gene_variant
T/C 15089852 downstream_gene_variant
A/G 15089856 downstream_gene_variant
T/C 15090089 downstream_gene_variant
C/T 15090093 splice_region_variant&intron_variant
T/A 15090391 missense_variant p.Glu119Val
C/A 15090425 missense_variant p.Ala108Ser
G/T 15090482 missense_variant p.Arg89Ser
T/A 15090743 missense_variant p.Met2Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01244.1
MMDNEVLEFDIGLGGVGEGEYDDDGGDIEHPMDEDELGDSSGGGGGGGGGGVTAGIYLPEGDLSDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYVRYNTLRHEAFKFVDEGAQSTETYDVAMDALQEAARRVSQAMQNEGRIPISNGKLRSHVMNDESHANYTSACQEECLSQHTSKFTGTVIGTDSCQEICQSPEQSNSYKSPVKLAKEFLEKVEEPS*


CDS Sequence:
>Vu_01244.1
ATGATGGATAATGAGGTGTTAGAATTTGATATTGGGTTGGGCGGAGTAGGCGAGGGAGAATATGACGATGATGGAGGGGACATCGAACACCCAATGGATGAAGATGAATTGGGCGATAGCAGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGTAACCGCTGGAATATATCTTCCGGAGGGGGACCTCTCAGATCTGGAACCCTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTACGCCCGTCGTGTTGGGTTTAGTACACGTGTCAGCTCATCCCGTCGTTCGAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTTCGCAACTTGAATGAGAAGCGCACGAAGGATAGAGAGATCAAGCGTCCCCGAACAATTACCAGAGTCGGATGTAAGGCGTCTTTGTCTGTGAAAATGCAGGACTCTGGGAAGTGGGTGGTGTCTGGCTTTGTTAGAGAACATAATCACGAACTGGTTCCCCCGGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCGGGAGCTGCCAAGACCCTCATTGATACCTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGTTAGATATAACACCCTTCGACACGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCTACTGAAACTTACGATGTTGCCATGGATGCTTTACAAGAAGCTGCAAGAAGAGTTTCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGCAATGGAAAATTAAGGAGTCATGTGATGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAAGAAGAATGCTTGAGCCAACATACATCTAAGTTCACTGGAACAGTAATTGGAACTGATAGCTGCCAGGAAATCTGTCAGTCACCAGAACAGTCTAATAGCTACAAGAGTCCGGTCAAGCTTGCTAAGGAGTTTTTGGAAAAAGTAGAAGAGCCTTCTTAG


Promoter Sequence:
>Vu_01244::LG1:15090746-15092746(-)
CAGGAGACATTTCAGGATCTTTTGTAAGCATGTTGAGAATAATTAATGTTCATCTATTGGAGTGTTGTAAATAATATATTATTAGGATAAAAACAATTCTCAATAATTTCATAATAATTAGAAAATACTATTCTTAGAATCTTCTTATTTATTTCAATGTGTTTTTATTTTATTATTTTTAAACTTTTAGTTATTAAATATAGATACGATGAGAATGTAATTTGTATGATTGGAATTAATAAAATATTCTTTTACTTTTTTACATAATTGAAGTATATGAATGACCTACCAATATTTTAATCAAATTAAAATTGGGGGACCACAAAGTAAGTCTATTAACTATCCTTCAATATTATATAGGTTATTTGAAATCTAAAAGAATAATCAATTTTATAGTCTCATTTGTCATGTCTTATAAACATCTTCTTTATTTACCATCTTAAAAACCTAAAAATGCGTATCTCTTCTCTCATACTATTTATTATTATGTATGTGATTTTTGGATATTGAATAACAAATTCTAACAAAAAGGCAATTCCTTAAACTCATTTCAATACTTTATCACTAATTGCAAAGATATATAAAAAATTATTAGTCATCAACATAGTAATGCTAACTTAATCTAACAATTATAAAAAAATACTTTGGGTTGTGAAATCATTACTACATCCCCAACCTTTAGATATCTATCAATATGCTTTTCCTACATAATTTGTTATTACATCAAGATCCATTTACTATGAAAACATGTACTTTTAACATGTTTACTAATTTAAAGCATTGCGAATTAAGTATCAAACATAAATAATCATATAAACATAAATAATCGCATATGCAAAGAAATTTTTGCACTCTATCAAATTCTTAAAATACTTCAACTAAAAATAAATATATATTTTCATATATCCAAGTGTGAGTGAAAAGAAACATTTCAATTTACATATCCTTAATTTTACCCACTTAGAACAACTAAACTAAACAGTTAAACAATAAAGTAAAGTACAAAATAATTAAAATGTAATGAATACTTTTTAATTTTGATATATTTTATTTTTGTTTTAAACATTTTTTAATCTCTACAAATATGACTGTGTCTATTTTAAATTATTGTAAAAATATTTGTCAGTTTTAAATTTCTCGTATTTTTCATCCATTCTGTTTTTTATTTTATATTTATCGTTAATTATGGTCAGTTTAATATAAAAATGGAAATATTAATTAATATATTTAAGGTAATATAGAATATTTCAAGTTAAGATAATTAGAATTTTAAGGTATATAATTTAATTAAGTAATATATTTTATTCTATTTAATATAAATAAGATAATTATACATATGCATTTTATGTTTTGACTAATATTTTACTTTTAAAATTATATGTTTGTTAAAAACAATTTACTCATACGCTTATAGTTTATTTTGATATTATGTTTAAATGACTGCAAAATAATTTATTTTCTCATAAGTTATGATTTTATCTTTTTCATAAAAATATTAAATGTATTAATTAATTTTATTATACATTATTTTAATTAATAATTTATATATTTTTTATTATATTAACTATAAATAGTGATAAAAATTAAAAAACACTAAAAAAATGCTAAAAGTTTTAAAGTTAAAAACAAATTTAAGAAAATAAGACAAAATAATATTTACAGGTGATTCCAATAAATTGTTTTACATATACAATTAGAACTTTCTGATAAATATGATCATTGTGGAGTAAGTTTGTGTTGAAAAGAAAGCATTTCCTGATTTTGCAATCGTAGTGTATAATTCGTGGTTAGCATATTCTCCACTCCACTGGTGGAGCTCTTCTCGGTGTCTGCCATTAGAGTCGACGGTGAGTTGTTTTCTTTATATGTATATATGTGTGGTTTCGATGGTATGCTAAATTTGTAGTCGCTCTGATTTCGCTGCATATAATGAAATCCATGTAATAGAGTGATTCCTGATCGCACAAGTAGTAAGTAGTAGTATTTGGGAAATTGAATTG


Gene Sequence:
>Vu_01244(-)
ATGATGGATAATGAGGTGTTAGAATTTGATATTGGGTTGGGCGGAGTAGGCGAGGGAGAATATGACGATGATGGAGGGGACATCGAACACCCAATGGATGAAGATGAATTGGGCGATAGCAGTGGAGGTGGAGGTGGTGGTGGTGGTGGTGGTGTAACCGCTGGAATATATCTTCCGGAGGGGGACCTCTCAGATCTGGAACCCTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTACGCCCGTCGTGTTGGGTTTAGTACACGTGTCAGCTCATCCCGTCGTTCGAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTTCGCAACTTGAATGAGAAGCGCACGAAGGATAGAGAGATCAAGCGTCCCCGAACAATTACCAGAGTCGGATGTAAGGCGTCTTTGTCTGTGAAAATGCAGGACTCTGGGAAGTGGGTGGTGTCTGGCTTTGTTAGAGAACATAATCACGAACTGGTTCCCCCGGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCGGGAGCTGCCAAGACCCTCATTGATACCTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGGTGGGATTAGCAAAGTCGGCTTCACAGAGGTCGACTGTAGGAACTACATGAGAAATAATAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTCGATTATTTAAGACAAATGCACGCCGAAAACCCAAATTTTTTCTATGCTGTGCAAGGGGATGAGGATCAGTCCATAAACAATGTTTTCTGGGCTGATCCCAAGGCAAGGATGAATTACACATTTTTTGGTGACACTGTAACTTTTGACACTACATACCGATCTAATAGGTATCGCTTACCATTTGCTCCCTTTACTGGTGTAAATCATCATGGACAGCCTGTTCTTTTTGGTTGTGCCTTCCTAATTAATGAATCTGAAGCATCATTTGTTTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGTCCACCAGTGTCCATAACAACTGATCATGATTCTGTAATTCGTTCAGCCATAATACAAGTCTTCCCCGAGACCCGACACCGCTTCTGCAAGTGGCATATCTTTAAAAAATGCCAGGAGAAGCTATCCCATATTTTCCTCAAATATCCAAATTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAACACTGGTAGATAAATATGATCTCAGGGATCATGAATGGCTTCAAGCAATATATTCTTCTGGCAGGCATTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCACTTGAAAGTCGCAATGAGAAGGAAGTGAGAGCTGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGTACACTAACATTCATGGCATCCAAAGCTGATGATGATGGGGAGGTCATTACATATAATGTAGCTAAATTTGGAGAGGAACATAAAGGGTACTATGTTAAATTTAATGTTTTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTCTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCACTATATATTGAAACGTTGGACAAGAAATGCAAAGAGCAATGTAATATTAGAAGACCATTCTTGTGATGTATATACTTACTATTTGGAATCTCATACAGTTAGATATAACACCCTTCGACACGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCTACTGAAACTTACGATGTTGCCATGGATGCTTTACAAGAAGCTGCAAGAAGAGTTTCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGCAATGGAAAATTAAGGAGTCATGTGATGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAAGAAGAATGCTTGAGCCAACATACATCTAAGGTCAGATTTCCGTTAGATAAATATTATATAACCTCTTTAATGGTGGATGCATTGAGTGTGTTTTACTATTTTATCCACCCTTATATGAAACCATTCTTGAACCTTCACCTAATATTAAGGTATTATGATATAAATCTTAATCTAACCAATCTTGTATGTTGAAATGGTTCCAAAGCTTCTATGACCAAGTGGTTAGGAGTTTGATCCCTGCCACTTCCCCATAGACCAAGTCAATAAAGGTAAGCTAGTGTTGAAATATCGTACCGTGATGAATAGGTGGTGGATATTTTAATAAATCCTCGTAAGGCTGACTGATTCAAGTTGATTGGAGAATTGATAATGGTACAATCTATTGCTGATACAAATTAAAGAGAAGTATAGTAGATAATTTGGTTAGTGGTTATATGTTAATTAGTTAATTAGTGGATTATCAACTAACTGCTTGTAATTGTGGACTATAAATACTGATATTTTATACTCTTTTTGATCTCTAATATCAGTAATTGTGGATTATCAATGTTGCCTTGATTGGTCATTAACTAGTCCAATTGTGGGAAAATGAGAAGGGGAATTTCTGAACATTGAAGTTCACTGGAACAGTAATTGGAACTGATAGCTGCCAGGAAATCTGTCAGTCACCAGAACAGTCTAATAGCTACAAGAGTCCGGTCAAGCTTGCTAAGGAGTTTTTGGAAAAAGTAGAAGAGCCTTCTTAG