Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01253 LG1 15241872 15243686 PREDICTED: cell division control protein 2 homolog D isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, G1/S transition of mitotic cell cycle, protein autophosphorylation, regulation of meristem structural organization, regulation of mitotic cell cycle, regulation of G2/M transition of mitotic cell cycle, signal transduction, hormone-mediated signaling pathway, hormone-mediated signaling pathway, hormone-mediated signaling pathway, G1/S transition of mitotic cell cycle, regulation of gene expression, protein autophosphorylation, hormone-mediated signaling pathway, hormone-mediated signaling pathway, regulation of G2/M transition of mitotic cell cycle, hormone-mediated signaling pathway, protein autophosphorylation, protein phosphorylation, hormone-mediated signaling pathway, hormone-mediated signaling pathway, regulation of mitotic cell cycle, regulation of G2/M transition of mitotic cell cycle, regulation of G2/M transition of mitotic cell cycle, protein phosphorylation
Cellular Component   is active in   nucleus, cyclin-dependent protein kinase holoenzyme complex, cytoplasm
Cellular Component   located in   cytosol, nucleus
Molecular Function   enables   cyclin-dependent protein serine/threonine kinase activity, protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity, protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity, protein binding, protein binding, cyclin-dependent protein serine/threonine kinase activity, cyclin binding, RNA polymerase II CTD heptapeptide repeat kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, cyclin-dependent protein serine/threonine kinase activity, protein binding
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
A/G 15241993 synonymous_variant p.Gly25Gly
G/T 15242006 missense_variant p.Ala30Ser
C/T 15242158 downstream_gene_variant
C/A 15242188 upstream_gene_variant
T/A 15242796 upstream_gene_variant
T/G 15243401 upstream_gene_variant
T/A 15243479 missense_variant p.Tyr302Asn
T/A 15243484 missense_variant p.Phe303Leu
C/A 15243570 3_prime_UTR_variant
T/G 15243632 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01253.1
MEKAGVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGDFIPPQTIKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDIWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWNPQSLSTAVPSLDELGIDLLSQMLKYEPSKRISAKKAMEHPYFDDLDKRHL*


CDS Sequence:
>Vu_01253.1
ATGGAGAAGGCAGGAGTACTATCGGCGAAGGAGGCATTCGAGAAGCTTGAAAAGGTTGGAGAAGGGACGTACGGAAAGGTGTACAGGGCAAGAGAAAAGGCCACTGGGAAGATCGTTGCCCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTCCCTCCCACCACCCTCCGCGAGGTTTCAATTCTTCGGATGCTCTCTCGCGATCCCCATGTCGTCAGGTTAATGGATGTCAAACAAGGTCAGAACAAGGAAGGCAAGACAGTCCTCTACTTGGTATTTGAGTACATGGATACCGATCTCAAGAAATTCATTCGCTCTTTCCGTCAAACCGGAGATTTCATTCCCCCTCAAACCATCAAAAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGGAAAACAATGATGCTTAAAATAGCTGATCTTGGGCTCGCTCGAGCATTTACTGTGCCGATTAAGAAATATACGCACGAGATACTTACCCTGTGGTATAGAGCCCCTGAAGTTCTTTTGGGAGCCACCCATTACTCAATGGCTGTGGACATATGGTCCGTTGCCTGCATATTTGCCGAACTTGTCACCAAACAAGCACTCTTTCCTGGTGATTCCGAGCTCCAACAACTCCTTCATATATTCAGGCTATTGGGTACTCCTAATGAAGAGGTGTGGCCAGGCGTGAGTAAACTAATGAACTGGCACGAATACCCCCAATGGAATCCTCAAAGTCTGTCAACAGCTGTTCCGAGTTTGGATGAGCTTGGAATCGATCTACTATCTCAAATGTTGAAATATGAACCTTCCAAGAGGATTTCTGCGAAGAAAGCAATGGAACACCCCTACTTTGATGACCTGGACAAGAGGCACCTTTAA


Promoter Sequence:
>Vu_01253::LG1:15239872-15241872(+)
AAGTAAGCAACATTGCAATTGTAAGATTGTAAATAAGTTTGAATGTGTAAATAAGTGAACCAGTAAAAGATTGATTTTGTACCTTTTTGTTTGCCCTTTTACATGTTCTTACATTATGACCAAATTCATTGCAGCTGCTACACTTCATAAGAAGATTCGTCTTTGATAATTTTGTATGAGTGACATATTCATCAGCCTCCCTTCTTCTTAGTTTTTTAGGCCTCCCAGGGGGTGTTTTATAAATTGGAGGCAGTAGGGAAGGAAATTCAGAAGTAGACCACAGTTGTTGTCCATTGATTGGAACAATCTCAGGGCCATAACAAGTGTCATAAGCCTCTCTCTTGTAATAAGGATGTACATAGTCTTCAGGGTTTTCTTGTTTGTAATTGATGGCAGCCACAGCGTGCCTACAAGGAATTCCTACCAAATCCCAAAGGTAACAACTACATGAATGGTTACTAAGGTCAACTACAAATTTATCCATACTCTTCTTCCTCACTCATTTGAACCTCTTCACCACCACCAAACTCTTCTTCCTCACCCATTTGAACCTCTTGCTGTTCCTCACCCATTTGAACCTCTTGTTGTTCCTCACCACCATCACACTCTTCCTCCTCACCCTTTTCAACCTCTTGCTGTTCATGACCACCATCACAGTCTTCCTCACCCTTATCAACCTCCTGCGGTTCATTACCACCATCACAGTCTTCCTCACCCTCTTCTAGACCCATTCCACCCTCTTGTACAATCTCATCCACTTTGGAAACCACTTCCTCCGTGTCTATGTTTCCTTTTTCAACATCACCCTCTTCCACTTCCTCAGCCACTTCACCACAACTAAGAAAGTGAACTTCCACTGCCTCACTAGGAAGAACATGTTCAACATAAATTTGTACCTCTTCGTTATTCTCCTCTGCATAATTAGCCAAGTACAGTGCTTCTCTGTCATCACTCAATAATCTGACATTATTCATCAGCCTTTGTTTGGACCCCTTCCACCAAAGTTTGAACTCTGCATCATACTTAAATTCTCTAACTATTCCAACCGCTTCAAAATATGACCAACGATCCGGATCAACTCCTTTGATCACGTGTATCTCTCCTCCAACATACTGTAACCCCTTATTACTAACAAACTTCCCCATGTGATGCAAACAAATGTCGAAAACCATTTCTAGACCTACATTCACACATCAACGCTTTACGCACAAATTGGAACAACCATAACCGAAAAACAAAAACAATAGCTTAACTTACCTTTAAGCTTGTCTTTACGCTTGTCTTTGACGACCACCGGAACGACCACCGCAACCACCACCGCAAGGACAATCAAGATACAATGCTTCCTCTCAAAGCTTTCCACTACAATGCTTGCAGTAAAACTACGTTTTCCCCCCAATTGAAATATTTACTTTTCACAAATTCTGAACCCTATATCTAATTTCAATTAACAACGTAATTAACTGCTTAATCTAAGTTCAACAGTTAAACATTCCACGTGGCAGAGAGTGAAGGCAGAGATCACAGCTCACGTGGCATCGCCGTTTGACACATCCACAAAAACTTAACGCCGTCCATTTTTAAGGACTATTACTCAGAGTTTCAAAACTATAAGGACTAAAAACCATCAAAGTTCTGAGCAGGGACTAAAAACAAAATCGTCTGATAGTTCAGGGACTAAAAACATATTTAACCCAAATAATTTTAATTTTATCCTAAAATTTGTATTATTTTAATAAAATTTAAAATACTCAATTAATATATAAAATATTGAACATAGCATGATTACATGACATTTGCAGTTATCTAGAATAGGAATGAATATAATTTGTGGAAAGAAAAGGAAAAAATAAAAATAAAAATATTGATATTCCTAATTTGATGTTGAGAAGGGAAGGGGAGCGGGATTTGAAATTCAAAAAACAAGTGTCCGTTGCACAACGACTAAGTTTCTGATTTGAAATTTATTGTTAATTATTATATATATTCGAAAATGTTTG


Gene Sequence:
>Vu_01253(+)
GAAGAGAAGGGTAGGAAATCTGATTTGAATTAAGGAGAGGAAGAGAAATGGAGAAGGCAGGAGTACTATCGGCGAAGGAGGCATTCGAGAAGCTTGAAAAGGTTGGAGAAGGGACGTACGGAAAGGTGTACAGGGCAAGAGAAAAGGCCACTGGGAAGATCGTTGCCCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTCCCTCCCACCACCCTCCGCGAGGTTTCAATTCTTCGGATGCTCTCTCGCGATCCCCATGTCGTCAGGTACTGTTTCCTCTTCCTCTTCTTCTTTCTCCTCTACCCACTGTTCTGTTCTTTCTTTCATTCTTTGTTTAGTAATTCCTAGTTCCGCACCACCCACAGGTTAATGGATGTCAAACAAGGTCAGAACAAGGAAGGCAAGACAGTCCTCTACTTGGTATTTGAGTACATGGATACCGATCTCAAGAAATTCATTCGCTCTTTCCGTCAAACCGGAGATTTCATTCCCCCTCAAACCATCAAAGTAATACATATTTTTAATTTTTCAGATCTCTCTCACTACTCTTCCCTTTTCTTTTTTTAAATCAATTTTCTGACTTGTGAATTTGGTCACAGAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGTTGTTAACCCCTTTTCCTTGTTTCCTATGATTTTTCTCGCATTTTCAAATGTGTGTATGCAAATACATATATGCGTATATTAACGATTGAATGTAAATTTAATGTTTATGTTTATTAAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGGAAAACAATGATGCTTAAAATAGCTGATCTTGGGCTCGCTCGAGCATTTACTGTGCCGATTAAGAAATATACGCACGAGGTAAAAAGACATGAGAGATAGCATCTTCTCTGAAAAATAATTATTTTCTCTTGCTTCGTTAATCATTTGTAAGTCAATATCTCAATCTTCAGATACTTACCCTGTGGTATAGAGCCCCTGAAGTTCTTTTGGGAGCCACCCATTACTCAATGGCTGTGGACATATGGTCCGTTGCCTGCATATTTGGTAAGGATAAAATATATTTTTTAACTTGTTGTTTCTATGTCATGTAGACGGTTTACAAATGTTATTTGTGTCTCCTCGATTGCAGCCGAACTTGTCACCAAACAAGCACTCTTTCCTGGTGATTCCGAGCTCCAACAACTCCTTCATATATTCAGGTGAAGCATTAGGACTAATATTCCGGTCTTTGTGTTTCTTTGTCAACTGTTTGCCTGATTTTGAATATAATTCTACCCTGTTTGTGCAGGCTATTGGGTACTCCTAATGAAGAGGTGTGGCCAGGCGTGAGTAAACTAATGAACTGGCACGAATACCCCCAATGGAATCCTCAAAGTCTGTCAACAGCTGTTCCGAGTTTGGATGAGCTTGGAATCGATCTACTATCTGTTAGTTATTCCTAATCTAACTCTTTCTAGTACTTCCTGTTGAATATCCATTCATTGTATTTTTTGTCTTTCCTTTTCAGCAAATGTTGAAATATGAACCTTCCAAGAGGATTTCTGCGAAGAAAGCAATGGAACACCCCTACTTTGATGACCTGGACAAGAGGCACCTTTAAGGAGAACAACTTGTTTGAAGATTTGGACGGTAGAAATTTAGGACTAACAATTTGCTCCCCATGTATGCTTCTCTCGAGCGTGTGCATCCTATAGTGCGTTTAAGCACAATCACTTTTAGTTGTTTTCTTTTCTATATTGGTTGAACTATGGAGTGAATTGCTTTTGTTTTCTAGC