Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01304 LG1 15624632 15625672 PREDICTED: transcription factor bHLH52-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 15624700 synonymous_variant p.Asn23Asn
T/G 15624765 missense_variant p.Phe45Cys
A/G 15625036 synonymous_variant p.Gln135Gln
C/T 15625057 synonymous_variant p.Asp142Asp
A/G 15625081 synonymous_variant p.Arg150Arg
A/G 15625102 synonymous_variant p.Val157Val
A/G 15625300 upstream_gene_variant
T/A 15625380 upstream_gene_variant
A/G 15625389 upstream_gene_variant
A/G 15625449 splice_region_variant&intron_variant
G/A 15625496 missense_variant p.Ala227Thr
C/T 15625499 synonymous_variant p.Leu228Leu
G/C 15625589 missense_variant p.Glu258Gln
A/G 15625610 missense_variant p.Thr265Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01304.1
MSLSKFFDWNTLQISDSEASLRNEAMADEIAPNIQHLFPYSDESFFLPNALFEYCIDPNDGFIYPSDIHSPFDPFTSFPHHQIFPTHEDYNPLPCPKRQKFFCEEQPELLTTPTIPSNHIDGFANCYSFQSEERQPQFFCMDEEKGNKERVISPQSVAARERRRKITNKTQELSKLVPGGTKMNTAEMLHAAAKYVKYLQVQVEMLELMNSFEHEDKAAPPSEILHALVVSPFVQEKLYAVEKCFLPKETVTTLTNLEVVQSRPTMVEELKQLIETDPEKEKQE*


CDS Sequence:
>Vu_01304.1
ATGTCGCTAAGCAAGTTTTTCGACTGGAACACTCTTCAAATTTCCGATTCAGAAGCAAGCCTCCGTAACGAAGCCATGGCAGATGAAATAGCACCAAATATCCAGCACCTTTTTCCCTACTCAGATGAAAGCTTTTTCCTTCCAAATGCCCTTTTTGAGTACTGCATTGACCCAAACGATGGTTTTATCTATCCTTCAGATATTCACTCTCCTTTTGATCCTTTCACTTCATTCCCTCATCATCAAATCTTCCCAACTCATGAAGATTACAATCCTCTCCCGTGCCCAAAACGCCAAAAGTTCTTCTGCGAGGAACAACCAGAGCTTCTTACCACACCAACAATACCATCCAATCATATAGATGGGTTTGCTAATTGCTACTCTTTTCAATCAGAAGAGAGACAACCACAGTTTTTTTGTATGGACGAGGAGAAAGGTAACAAGGAAAGAGTCATATCTCCACAGAGTGTAGCCGCAAGAGAAAGAAGAAGAAAGATTACAAATAAGACTCAAGAACTCAGTAAGTTGGTCCCTGGTGGAACAAAAATGAACACTGCCGAGATGCTTCATGCAGCTGCAAAATATGTTAAGTATCTTCAAGTCCAAGTTGAAATGCTTGAACTCATGAACTCGTTTGAGCATGAAGATAAAGCAGCACCTCCTTCTGAGATTCTACACGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGTGGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAATCTTGAAGTTGTTCAATCGAGACCTACCATGGTTGAGGAACTTAAACAGCTAATTGAAACAGACCCTGAGAAAGAAAAGCAAGAATAA


Promoter Sequence:
>Vu_01304::LG1:15622632-15624632(+)
TTTTAAATATGGTTAGCTAGTAACGGATTAGAGTATTACTTGGAGTTCAAGACAACTAGGTAGGATAATTAAAAAATAAATAAAAAGTTAGAGAACAATTTTGTAATAGTTTAGATTAGATTTGAAAGACATTGACATGACTTTGCCATTTTATCATCAAACTCATTTAATTGTCTTTAAGTTTTCTTATTGATAATAAATTATTATTATTATTCTTTTGTTAATTATATATGCAGTAACAAAGTCAAGTGAAAAATAAGATAAAGTGAAAATTTTCTACCCATAATATTATTTTAATAAAAAAAATTATTGAAATGTAGTAGATGGAATTTAATTTTTGAGATCGGAATTTCTAACTCATTTTTTATTTTTTTTAATTGGTGGTGACAAAATCGCGCTAGATTTTGGTTTATGCTGAGATTGAATTTTGACAAATTTTGATTCTTTTCATTTGTGTGTCTTTAAAACTTCAATCTTTATTAGAATATTTTCTTCCCATAGTCTCATAAAAAAAATGAGATAAGAGAATTTCTTTAATTTGATTCTTCAATAAAAATTTTGCAAATTTGTTTACACAATTGTCTAATTCAACCATTTAAATAAACTTGTCCTTACTTACTTCACATACCTAATAGGTTAATTCAACAATATATAATTAAAAATCTTTCTCATCCAATTTAGATAAGTTAACCTAGTACATCCAAGCTGACAATGATTTTATATTTAAATAAGTGATAAATTATTTATACGTGTTTTGATATTTAATAAAAAATTCAAATGTAAGTAAAAATGATATATTCGAATAAGTAATAAATTATTCAAATATAATTTGACAGCTCCCACATCAGACACTTCATGTGACAACTCAACATTGATCTGATATCCGTCTGACAGTCCACCTGACAACCCGACATCAATCTGACATCATCTCCGACATCAGTCTGGCAATCCACCTGACAACCCGACATCAATCTGACAATCCACCTGACAATCTGACAATTCACCTGACAACCCGACATCAGTCTGACAATTCACCTGACAACCCGACATCAGTCTGACAATTCACCTGACAACCCGACATCAGTCTGACAATCCACCTGACAACCCGACATCAGCCTGACAATTCACCTGACAACCCGACATTAATATGACATTAGTCCAATAACATAAACAATCCAACTGACCCTTATTTTTATGGACCAAATCCAACTGACCCATTTTTTTAACTCATCACATCTTCTAAATTTATATTGCAGTTTGATTCTCTTATATTCATCTTTTAATAGCTTTTGTCATGAAAAAGTAAGTTGGGATTCAGTTTAGGGAGTCAAATTTCTACTTATTACAATGTTAAGTGTTATTCTCTTAAATAAACTTGTAAAGAATCATTTGGATAATTTTTTATTAAAATAGCATTATTTCTGGAAAATTTTCAAAAAAAAGTATGTAAATTATATATATATATATATATATATATATATATATAATACATGGATCAGCTTTTTAGATAATTTCAATATACATTATCATATTTATTAATATCAATTTAAATTAATAAAATACTATATATTAATTATGAAATGGATAAAAAAAATATAAAAAATGGTAATAATCGAATCTAGGTAACTGCTTTCAACTTCTCCTGAAATCTCTCCACCAACAAAGGAGCAACAGGCAGGTGAGGGTTGAATCAGTTTTCGTATTTTCCGTATAAAGGTCTTCCTACAGTGTGTTTTCTTCTCACACTCAACAAATCTACATCATCGTATTTCCCTCTCTCCTATGTCTGTACTCTCTCTACGACACTCTAGGTAGATCCTAAAGATTCTTGTGTTTTTACATGGTTCACTTCAGCTTTAACTTTTAACTGCTTGCATGCATATGCATACACACACATATATATATTGAGTTATCAACTACTACTGCACCATTTTTTCTGTTCTTTCTCACTGAAGTGAACTTGTTGTTTCATCGTGTTGCAGAAGATTAATGTGTTACGA


Gene Sequence:
>Vu_01304(+)
ATGTCGCTAAGCAAGTTTTTCGACTGGAACACTCTTCAAATTTCCGATTCAGAAGCAAGCCTCCGTAACGAAGCCATGGCAGATGAAATAGCACCAAATATCCAGCACCTTTTTCCCTACTCAGATGAAAGCTTTTTCCTTCCAAATGCCCTTTTTGAGTACTGCATTGACCCAAACGATGGTTTTATCTATCCTTCAGATATTCACTCTCCTTTTGATCCTTTCACTTCATTCCCTCATCATCAAATCTTCCCAACTCATGAAGATTACAATCCTCTCCCGTGCCCAAAACGCCAAAAGTTCTTCTGCGAGGAACAACCAGAGCTTCTTACCACACCAACAATACCATCCAATCATATAGATGGGTTTGCTAATTGCTACTCTTTTCAATCAGAAGAGAGACAACCACAGTTTTTTTGTATGGACGAGGAGAAAGGTAACAAGGAAAGAGTCATATCTCCACAGAGTGTAGCCGCAAGAGAAAGAAGAAGAAAGATTACAAATAAGACTCAAGAACTCAGTAAGTTGGTCCCTGGTGGAACAAAAATGAACACTGCCGAGATGCTTCATGCAGCTGCAAAATATGTTAAGTATCTTCAAGTCCAAGTTGAAATGCTTGAACTCATGAACTCGTTTGAGGTAACTTCACGATCACCTCCATTTTTATCAAACATCATTGTTTCTGTTGCTCCATTAAACATCATTGTTTCTTTGACACGTGGTTGGTTTTGTCTGTGATACACTTTTTTGTCAAACAACATTAAAAAAATGAATTTTCCATTTTTGTTTCTTATTTTTTAAGCTTACCTTTTTCTCTAACTGTAGCATGAAGATAAAGCAGCACCTCCTTCTGAGATTCTACACGCTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGTGGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACCACTTTGACAAATCTTGAAGTTGTTCAATCGAGACCTACCATGGTTGAGGAACTTAAACAGCTAATTGAAACAGACCCTGAGAAAGAAAAGCAAGAATAA