Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01450	LG1	17078945	17080858	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, cellular response to molecule of bacterial origin, innate immune response, cellular response to molecule of bacterial origin, innate immune response, cellular response to chitin, cellular response to molecule of bacterial origin, protein phosphorylation, cellular response to molecule of bacterial origin, innate immune response, innate immune response, cellular response to chitin, cellular response to chitin, innate immune response, innate immune response, protein phosphorylation
Cellular Component	located in	chloroplast, plasma membrane
Molecular Function	enables	protein serine/threonine kinase activity, kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, chitin binding

SNP	Position	Effect	Amino acid change
C/T	17079529	synonymous_variant	p.Asp195Asp
G/T	17079552	missense_variant	p.Arg203Ile
C/T	17079600	missense_variant	p.Thr219Ile
T/A	17079814	synonymous_variant	p.Val290Val
G/C	17079877	missense_variant	p.Lys311Asn
A/C	17079878	synonymous_variant	p.Arg312Arg
C/T	17079898	synonymous_variant	p.Ile318Ile
T/A	17079972	missense_variant	p.Ile343Asn
T/A	17079994	synonymous_variant	p.Val350Val
G/T	17080015	synonymous_variant	p.Gly357Gly
A/T	17080579	synonymous_variant	p.Leu545Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01450.1

MNHVAFLFTITFFLLCFDGKAQQNYSGNSILSCKNDDKMGPSPSFLYTCNGLNKSCMAFLIFKSRPPFNTVLTVSNLTSSNPEELARINGVTVLTEFPTGKEMIVPLNCSCLSRDYYQAETEYVLGQSPTYFTVANNTFQGLTTCDSLMRANPYGEFDLLPGMELHVPLRCACPTMHQVTDGTKYLLTYSVNWGDNITSIATRFSVAARNVVDANGFNTPTESLFPFTTVLIPLPSEPLSSMTKVVSDPPDMSPPLVCSSMKCKSKRKFYTAIATTVGSIVVLCAVLYGVFLFRKRSARFVKRGEEGEKAKRLSSDDIRGEIAIIEHHSKVYEFEEIKEATEIFSSKNRVKGSVFRGVFGEEKNILAVKKMRGDASKEVNLLKRINHFNLIKLQGYCENDACSYLVYEYMENGSLREWLSKNRTTEHQILAKRILIALDIANGLQYLHNFTEPSYVHRNINSGNILLNKDLRAKIANFALAEESERKITSSCALSDMESGYIAPEYHEAGIVTTKMDVYAFGVVLLELITSKDFVTIPEEREAMLHVVIVNFIGKENEEEKVSLFVDPSFTGNNEKVCALQLVKLGLTCLIEEAEERPSMVEVVSSLLKIYVSYMDQILPLSINSSPSIHNSLSMEM*

CDS Sequence:
>Vu_01450.1

ATGAATCATGTTGCATTTCTCTTCACAATAACGTTTTTTCTTCTTTGTTTTGATGGCAAGGCACAGCAAAATTACTCTGGGAATTCAATTCTCAGCTGCAAGAATGATGACAAAATGGGGCCTTCACCTTCATTCCTTTATACCTGCAATGGCCTCAACAAATCATGCATGGCCTTCTTAATCTTCAAATCAAGGCCTCCTTTTAACACCGTACTCACAGTTTCCAACCTCACATCATCAAACCCAGAAGAGCTTGCAAGAATCAATGGTGTAACTGTGCTCACAGAGTTCCCAACTGGGAAAGAAATGATTGTCCCTCTGAACTGTTCTTGTTTAAGTAGGGACTATTACCAAGCTGAAACTGAATATGTATTGGGGCAATCCCCAACGTATTTCACAGTGGCAAATAATACTTTTCAGGGTTTGACCACTTGTGATTCGCTCATGCGTGCTAATCCATATGGGGAATTTGATTTGCTTCCTGGCATGGAGTTGCACGTGCCACTCAGATGTGCTTGTCCAACAATGCATCAGGTCACGGACGGCACCAAGTATTTGCTGACATACTCGGTGAACTGGGGTGACAACATTACAAGCATTGCTACAAGATTCAGTGTAGCAGCAAGGAATGTGGTTGATGCCAATGGTTTTAACACACCAACAGAATCTCTTTTTCCCTTCACAACTGTTCTGATTCCTTTGCCAAGTGAACCTCTGAGTTCAATGACCAAAGTTGTTAGTGATCCACCAGATATGTCACCTCCTCTTGTTTGCAGCTCCATGAAGTGCAAGTCAAAGAGGAAATTCTACACTGCTATTGCCACCACAGTGGGTTCCATTGTGGTTCTGTGTGCTGTCCTTTATGGGGTTTTTCTGTTCAGAAAGAGATCTGCAAGGTTCGTTAAGAGAGGTGAAGAAGGTGAGAAAGCAAAGAGGTTATCTTCAGATGATATCCGTGGTGAGATAGCAATCATTGAGCATCACTCTAAAGTTTATGAGTTTGAGGAAATAAAGGAGGCCACAGAAATTTTTAGTTCAAAGAATAGAGTTAAAGGTTCAGTGTTTCGTGGGGTATTTGGTGAAGAGAAGAACATACTGGCTGTTAAAAAAATGAGAGGAGATGCATCCAAGGAAGTGAATTTGCTGAAAAGAATCAATCATTTCAACCTGATAAAGCTGCAGGGTTACTGTGAAAACGATGCTTGTTCTTATCTTGTTTATGAGTATATGGAAAATGGCTCTTTGAGAGAATGGCTAAGCAAAAACAGGACTACCGAGCACCAGATTTTGGCAAAGAGGATTTTGATTGCTCTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACGGAACCTTCCTATGTGCACAGGAACATAAACAGTGGAAACATTCTTCTAAACAAAGATCTGAGAGCCAAGATAGCAAATTTCGCACTTGCTGAAGAATCAGAAAGGAAAATAACTTCCAGTTGTGCCTTGTCAGATATGGAGAGTGGTTATATTGCTCCAGAGTATCATGAGGCAGGGATAGTCACCACCAAAATGGACGTTTATGCTTTTGGAGTGGTACTGTTGGAATTGATCACAAGTAAAGATTTTGTTACTATACCAGAAGAGAGAGAAGCAATGCTACATGTAGTCATAGTAAACTTCATTGGAAAGGAGAATGAAGAAGAGAAGGTGAGTTTGTTCGTTGATCCTAGCTTCACTGGAAACAATGAGAAAGTGTGTGCTCTCCAGCTAGTTAAATTAGGTCTAACCTGCTTGATTGAAGAAGCAGAAGAGAGGCCAAGCATGGTAGAGGTAGTCTCTAGCTTATTGAAAATATATGTAAGTTATATGGACCAAATATTACCACTTAGCATCAACAGTAGTCCCAGCATCCACAATAGTCTCAGCATGGAGATGTGA

Promoter Sequence:
>Vu_01450::LG1:17076945-17078945(+)

TGGAGAAGTTGAATATCGAATTTAGCAATATTAAATAAAATGTTGGGTATTTATAATACTGTGTCTGACTTTGTTGTTATATTTTTTTTCCAACAAAGAGATGCTGGCCGGCGGCTGTATTAGCTAAGGCTATTTGTACATGTCGTTATCCTTAATTTATCTTTAATTATGTTTTATGTATTAGAATCAAGGTTTAATTAACATCATGATAATAATTATTTTCTTCTGTAAAAATTTAAGAGGTTTATTTGTTGAAAAAAATAGGTGTAAAATTCTCTGTTAACAAAAATATAATACTTTTTTATATTTTTAATTTAATCTAAGTTCATCGTAGTATATTTGTTTGTATCTAAGATGAGAAAATTATACATCTCCGATTGATTATGAGAGGAAGTTGAAGAATTAGAATAGATGAATTAAATAAAGTGTGTTAAAATGTTATTTTCAACACTTTTAAGATTGCGTATACGATAACTAATATTGGTAATGTAACATTTGACTTTGGACGAGAAGCATATTATACTATATTTTCTTATTTGCATGCAACTAATATTTTTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTTCATATTTAGTAAAGTTAACAAGGTCATTTTAGTTAGGATTTACAGAATATAAATAGAACTAATTAAAATGGTCTGGTTTGCAATTTTTCATCAAAGCTAATCAAATCAGTATAGCTAAGAATGATTTGGTTGAATTCAATTGGATTTTATTACAATTACATTTTAAAAATTATTTTAAATCTTAAAATACTTGTAGAATTTTTAAATATTTACAACTCAGTAACCACCATTTAAAATGTTTAAAATTAAATTTTAAAGACTATCAAAATAAAAGTATAATAAATAATAATAATAATAATAATATCAAATAAGCGAAAACAAAATATTTCTAAATCTCTAAAAAACATTAACTTTGAAGTAGTCCATAAAATTTTTTAATTTACATGAATGTCGAGTCTGAAAAAAATTATTTTAGATGATTGAAATTCAAACGTTCACATTATAACATAATTTTCTCTCTCTCCAAAACTTTCAAAAGACAACAACATACATAAGATATAAATTGAATTGAGAATGTTGATGTAGAATCACAAAAATGTGATTGATGGATAATTCATAAAATTGAATAGTAGGTATTATGAGGCAATGATTCAAATGCAAGTTTTACCAATAGACTTAGTCATATAACAAAAACATAAGATAGTAAAAGCCTATCAAGATTTATGTCATTTAGATGAAGATGTTGTAAGAAGTTATTGCATGAGATATATACCAACAAAAACTAAGTTATAAGACAGACAAAATTATTATAATAAGCGTTACGAGTATTTATCTAACTTTCAACTTTATGAGTTTAGTGAAAAAAGACAGTGTGAAATAAATATAAAAAAGTTTATATGTATCAAAATATATGCATAAAAAAAATTATATGAAGCAATTAAAGATATATGTAATTAAAAGTAAGATTTTGAAAATGTACAAAATAAGAATCTAATTAGTAAGATAAACCGTGGCAGCCTGAGCTCGAGAACGAAAATACAAGGACAAAATCTACAACAACCTTATGCAAGTTGCTGTATATTTTTATAGATTGGTTCATTCTCTGAATGATTAAAATAATCCACATTCTTCTTTATCTTCATTTTTCCCATAGTTTACATCACAGCATAATATAATATGAAGCAACCCCAAAACCAAGTCAATTTTTAAATATGATCACAGTTATGTAATTCATCTCTTAAAGCAATCATGGTACACTGAAACAGTGGTCCCAAACAGCGTTTGGCAATTGCCTATTGTTTTCTGTAGTATACTGAATTAGTCAGCAAAATTCTCACGCGTTATTCTGCTATAATAGTGGTACAATGAGACTCAAGCATCTTAAATTATCACACTCAAATGTGTTCTCACTTTGTTTTTTCGTAGTCTTCTTTTTGTCTTTAACACAATCTCACCA

Gene Sequence:

>Vu_01450(+)