Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01464 LG1 17211159 17214295 PREDICTED: probable transcription factor KAN4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, integument development, integument development, integument development, abaxial cell fate specification, abaxial cell fate specification, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant ovule development, regulation of transcription, DNA-templated, integument development, regulation of transcription, DNA-templated, integument development, regulation of transcription, DNA-templated, integument development, regulation of transcription, DNA-templated, plant ovule development, plant ovule development, regulation of transcription, DNA-templated, integument development, regulation of transcription, DNA-templated, plant ovule development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, integument development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, plant-type cell wall
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/T 17211236 missense_variant p.Glu278Lys
C/T 17211320 upstream_gene_variant
T/C 17211400 upstream_gene_variant
C/T 17211654 upstream_gene_variant
G/A 17211909 upstream_gene_variant
C/T 17212414 upstream_gene_variant
C/G 17212419 upstream_gene_variant
G/T 17212502 upstream_gene_variant
G/T,* 17212551 upstream_gene_variant
C/G 17212560 upstream_gene_variant
A/G 17212567 upstream_gene_variant
G/C 17212569 upstream_gene_variant
A/T 17212575 upstream_gene_variant
G/A 17212579 upstream_gene_variant
G/T 17212580 upstream_gene_variant
G/A 17212595 upstream_gene_variant
T/C 17212606 upstream_gene_variant
T/A 17212610 upstream_gene_variant
C/T 17212614 upstream_gene_variant
G/A 17212615 upstream_gene_variant
C/T,* 17212620 upstream_gene_variant
G/A 17212624 upstream_gene_variant
G/T 17212627 upstream_gene_variant
G/C 17212640 upstream_gene_variant
G/C 17212645 upstream_gene_variant
C/G 17212649 upstream_gene_variant
T/G 17212652 upstream_gene_variant
C/T 17212660 upstream_gene_variant
T/C 17212676 upstream_gene_variant
A/G 17212684 upstream_gene_variant
T/C 17212687 upstream_gene_variant
G/C 17212689 upstream_gene_variant
A/G 17212694 upstream_gene_variant
G/A 17212711 upstream_gene_variant
T/C 17212718 upstream_gene_variant
T/A 17212723 upstream_gene_variant
A/T 17212744 upstream_gene_variant
C/T 17212750 upstream_gene_variant
A/G 17212751 upstream_gene_variant
G/A 17212757 upstream_gene_variant
T/G 17212758 upstream_gene_variant
G/A 17212764 upstream_gene_variant
G/A 17212769 upstream_gene_variant
G/A 17212772 upstream_gene_variant
T/C 17212804 synonymous_variant p.Ser222Ser
A/G 17212948 upstream_gene_variant
T/A 17212956 upstream_gene_variant
C/T 17213055 upstream_gene_variant
A/T 17213056 upstream_gene_variant
T/A 17213295 intron_variant
G/T 17213409 intron_variant
A/T 17213419 intron_variant
G/A 17213509 missense_variant p.Pro171Ser
T/C 17213577 intron_variant
T/A 17213630 intron_variant
A/G 17213702 intron_variant
T/C 17213736 intron_variant
G/A 17213759 intron_variant
A/T 17213766 intron_variant
G/A 17213768 intron_variant
T/A,* 17213776 intron_variant
G/T 17213832 splice_region_variant&intron_variant
C/G 17214101 missense_variant p.Glu65Asp
A/G 17214134 synonymous_variant p.Ser54Ser
A/T 17214146 synonymous_variant p.Ala50Ala
G/C 17214147 missense_variant p.Ala50Gly
T/A 17214157 missense_variant p.Ser47Cys
A/G 17214167 synonymous_variant p.Ser43Ser
A/G 17214169 missense_variant p.Ser43Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01464.1
MQTLLSSLPEPDLSLNISPPSISEVKEVGCFGKVIYSDMCSTSDSGSSGASDLSHEFHNLGHHREPTLKLGFGTMDLNPRHHQVHGDTRSFTHHNHHHHHHHLQPHIYGRDFKRTARVVNGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTTGHGQTNIAVLNPRQGINIVHLHAPSPNLPDPIQSSHRTAWQQSSIETKTKNSRQEAEMGLTYCEVKGSESMVNGLDSTSLSRSEGMLDLEFTLGRPIWQKDHAESSRELTLLNC*


CDS Sequence:
>Vu_01464.1
ATGCAAACTTTGTTGTCATCTTTGCCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATTTCTGAGGTCAAGGAAGTGGGGTGTTTCGGCAAAGTGATTTACAGCGACATGTGTTCAACTTCTGATTCTGGGAGCAGTGGAGCTAGTGATTTGAGTCATGAGTTCCATAACCTTGGTCACCATCGTGAGCCCACGTTGAAGTTAGGCTTTGGAACAATGGATTTGAATCCTCGCCATCATCAGGTTCATGGTGACACCAGAAGCTTCACTCACCATAACCACCACCACCACCACCACCACCTTCAGCCTCACATCTACGGCCGCGATTTCAAACGAACTGCAAGAGTCGTCAATGGCGTCAAAAGAAGCGTCAGGGCTCCTCGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTTCTTGGCGGCCATGAAAGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCCCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACCACAGGCCATGGGCAGACAAATATTGCAGTATTGAATCCAAGGCAAGGGATTAACATTGTTCATCTGCATGCACCTTCACCCAATTTACCAGACCCGATTCAAAGTTCCCACAGGACAGCGTGGCAACAATCATCAATAGAGACAAAAACAAAGAACAGTAGACAAGAAGCAGAGATGGGTTTGACGTATTGTGAGGTGAAGGGAAGTGAAAGCATGGTGAATGGCTTGGATTCTACCAGTTTGTCACGTTCCGAGGGAATGCTTGACCTAGAATTCACCCTTGGAAGACCCATTTGGCAAAAAGACCACGCAGAATCATCCAGAGAGTTAACTCTTTTAAACTGCTGA


Promoter Sequence:
>Vu_01464::LG1:17214295-17216295(-)
CATTCAACCTAGTAATTTTTATGTGGCTATGTTACTTTATACGAAGTTTAACCTTATAGTTATTTATACATGTAGGTAACTATTTAAGTGTAAATTTAGTTATTTAAAATATCCAAATTTTAAATTTTTGTATCATCCCAATTAATACATATAAAGGGATAATTTAGAAAATGTATATATTTTGAAAAAAAAAAACATATATGGTCATATAGTTATATGTTAGCCACATTTTCTCTCTTGCTACGACTTTTGTATCACTAAAATTCATTCCAAATTGTAAAAAAATAAAATAAAATCACACTTTTAAATCAGAATGACAGAGCAATTAAAAAATTTCAAGAAAAACCCACCAAAGTGATGACTTTTTTTTTATTAATTCCAATCACTAGACATAAGTCTCAGAAAAACTATCAAGGAGAGTTTAGGTAACATTGTTGTGATTAGATAGATTGTGGTATATAAGTCAAAAAGCGCGTTGGAGTAACACTCTGAGAGATATGACAACACCATAGTTGAGGGCCTTATCAGCATATTTTTCTCTTCTGCATGTGGTTGTGGGTCTGCAACCTGCTCTCACCTACACTCTCTATACTCATACTCACACACTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCCTTTTTCTTAAATCTTTCAACCTTTCTTCTCACCTCCAAATTTGGACGTGTACAACACGAGCTTAAGAAATGTATGAAAATGAGATGTTGTTGATAAACGAGTTAAAAAAGATGTAGGAGAATCAAAGAGGTGGGATTAGAGTTTGAGTTAGGGTGCTAAGTGTTAATTAATTTTTGTGGGGATGATGTGTGGTTGGGTATGGAAAATACAGATATAGAAACAGTCATTTTCCTGTGAGTATATATAGGCAAGGTTAAGCATGTCATAGGTAGAAAACGATGAGGTTTAATGGCACATATGTGTACATCTGCACGTAACAGAGAGAGTGAGAGAGAAAGAGAAAGGAGGGTGAGTTTGAAGAGGATATTTTGGGGTGGCAGTGAATCCTCGTTCATAATAAAAGAGGAATATTCCAATTAAAGAAAAATGCAATTTAAAAGAGATAAACTAAACTCTGATAGAAACAAAAAGAGCAGGGAATTTTAACGGGTCGCGATCCATCATCTTAAACTAGACACTCAATTTCCATTCCTATATTCCATTCAACAGTACCCCTTTTGTTTTTCTCGAAATCCAACCATATTCCTGCCAAGAACCACCATTACATCGCCGCTTCAAACTTCTCTTTTTTCTTTTCTTTTAATTTAATTACCTGCAGATAAGGGAAACCAGTGACCAGACTCTTCCCTTCTTCACTTTCTCTCTCTCTCTATCTATATCTCTCTCTCTATATCTCTCTCTCTATATCTATCTATCTATCTATCTACAGCAGTAGTAGTAGTACTTTGATGACTAATATATCTCTCAGCTTCCATAAATAACTGCTACCCCTTTTCACTAACTTTTGGTTCAAACCACCATCCCCAAAAAACTCTGATCTTTTCTCTTTCCCTTTTTTTTATCTGACTAGTGGTGACAAGTAGTCCCTGGAAATTAATTACTCTCTCTCTCTCTCTCTCTTTCAGCTTTTAAAATTTTCCATATGGTGGTCTTCCTTCAACCCTAGTGGGATCCTATACTAAAAGCCTATAACCACACCGTCTCAAATCATAAGTCACTCATGATATAATCACACCCTTAAACCCTTCCTTTCACCTCTTTCAACTTCTTCAATTCCATCACCTCTTACTATATTTGCTTTTCCACTTCACACCCTCACTTTAACTCTCAACTCTTCCATTCCCTTATATATATATTTCACTACCTTAACAAACACAGATCTTCTCCGTTCTTCGGTTTCTCTATATTTTTATCTGTCTTTTTCTACCTATCTCCATGTTCACCAATTCACATACGCTA


Gene Sequence:
>Vu_01464(-)
ATGCAAACTTTGTTGTCATCTTTGCCGGAGCCAGACCTCTCCTTGAACATAAGCCCTCCCTCTATTTCTGAGGTCAAGGAAGTGGGGTGTTTCGGCAAAGTGATTTACAGCGACATGTGTTCAACTTCTGATTCTGGGAGCAGTGGAGCTAGTGATTTGAGTCATGAGTTCCATAACCTTGGTCACCATCGTGAGCCCACGTTGAAGTTAGGCTTTGGAACAATGGATTTGAATCCTCGCCATCATCAGGTTCATGGTGACACCAGAAGCTTCACTCACCATAACCACCACCACCACCACCACCACCTTCAGCCTCACATCTACGGCCGCGATTTCAAACGAACTGCAAGAGTCGTCAATGGCGTCAAAAGAAGCGTCAGGGCTCCTCGGATGAGATGGACCACCACCCTCCATGCCCATTTTGTTCACGCGGTTCAACTTCTTGGCGGCCATGAAAGTAAGTCTTTCGAAATCCATCGCTAAAATTTAGCAGATTCCAAAATCAATGAAAAAAAAACCATATTTTTCTTGAATTACTTTAAAAACCATGATGTTCTATAAGCCATGGTCTAATTACATTATACGTGTGAGTATTGTTTGAGGGCTTGTTATTATATGTTGGAATGTAAAAGGTGATGGTCCTGAGATAAAACATATGTATAAATATATATAGATATAGATATATATTCTAGGTTATGTCTAATCTTGAGTTTGTCTTATCACACTTGCAGGAGCAACTCCGAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCCCACGTCAAGAGTCACTTGCAGGTGGGGTAGTTTCTATTCTCTCCCCATTATATTTCTCCATAGTCTTTGAGCTTAATGAGTGAAGTTCCTATATTCTTCCTCTTTGAATTAGTTTCTGACTAGACAGAAGAAAAGAAAGGGAAAAAAGGACTATTGTTAGTCGCTATAGGTTGCCTCTAGTAGTGGGGAAGGTAGAACCAAGGACTAGGGACAAAAGGGGTATCTAGATTATGTAATGCAATCTTAGCCTTTGTGGACTTTTCTTCTCATTTTATCTTTTATGCGGGGTGTTCATGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGCACCACAGGTAATTGAATCTCGGAGTGTTGTGTTCCTTCTCAAGGACCCTTTTTTCGTTTCTTCTTCTATTATTATCATCATTATTATTCTCTTTGTTTGAGATCTTTGGTGATTCGGGTGTGACAGAAAACTCTATGATTTGCCTAGTACTGTTCCCCGTTAAAAACAAAAGTCTCTTTGGCATATAGGACTTGTTTCAAAATCGCCAAGTGAATTATTAACCTCTGGTGTCTGATAAAGGAAGAGCAATGGCTCCATTGATGATGAATTTTGCAGGCCATGGGCAGACAAATATTGCAGTATTGAATCCAAGGCAAGGGATTAACATTGTTCATCTGCATGCACCTTCACCCAATTTACCAGACCCGATTCAAAGTTCCCACAGGTTATTCATTCATTTTTTGCATCAGTTCCCTAAACGATTCTGTCTTTTAATTTTCTGTGCTTTTTCAGATTTCATTCACACACCATGATGTTTTTTCTCTATCCAAATTAATGTTAACTTATTGACTAATGGTGATTCAACTGGACCATTACATTAAAAGCAACCTACGAGGGTGTCGGAGAACAATGTATATGCACGGTTTTTCAAAAATCCCTCTTGTTTCATCCTTTTGTTTATTTTCTTTTTCTTTTCCTTGCAAACTTTTTACAATAGCGATACTCATATACCTCACTTTTACGTGAAAATAAAAATAGAGAAAAAAAATTAACGGAAAAAGAACTGTTATATAAATAGAAAATGGAAAAAATAATTGAGTGGATGTTTGGCACAAAAGAGATAAACTGAGTGTAAAGTTAATTTTCTAAGTTTTATACATCCCCTATAATTAAAAGTTTAATGTTTGGTGTCGGTAAGACTTTTTTTACCAAATCTTTTTTTGTTTTTTTAAATTCACGTGTGTCATTGGCTTTTTCTTATTTTTTTATTACAAGCTTCTATAACGACAGCTTGAAAACATGTACATAGATTTTGACGAGTAAAAGCTAGGGTTTCTATAGGTAGGTATGAGGGTGGTCATTTTCTACATGGATTCTTAATAATGCTTTCGTATTCTTGATCCCAATGCATGGCAAAAGTTCTACCCTGTGGTTCAAATCTCAATGTGTTACATAAGCCACATTTTTTAAAGAAAAGTAAAAGTGATACAATAAACTTCAAATGTTATAGTAATAACCTTGTGAGATCCTTAATTGGTCGTGGACCAACTAATCCACCACCTAATAATTTATTTTTGTCTATAAATACACAATAAGGAGAATGACACGAATGAGTTACAAAGAAATACAGTTTCATTATTTGGTTAAATATATGTTTCACTACCAAAATTGAGATTGCAAACAAAAACTGTTCCTCTCTTCATGAAGAGGGTTGTATGTTATAAAATCTCACTTCTTTCCATTTCCGAATAAGATCACATATAAAGTTTCAACATCTCAATTAATTCCTTGGCAAATTGAAAGTTTTGGATGTTGACCGTTAGTGCATCACATGGCATTTCGCCTCATTGAAAAGGCAATCGGATGAACTCGTATGTAGCAATGGCGTTTGAAGTTGCACACATTAAGGAATTGGATTTGGAGTTTTGTTACACAGTGTAAAACATAATACTAAGTAGAAGATGTTCACTTTCAACATTAATATGTTGTTCACTTTTCAGGACAGCGTGGCAACAATCATCAATAGAGACAAAAACAAAGAACAGTAGACAAGAAGCAGAGATGGGTTTGACGTATTGTGAGGTGAAGGGAAGTGAAAGCATGGTAAGTTGTGACATAAATGGATGTAGCTTCTGGCTTGTAGTTTTGTTGCATGCATTTATGAATATTCTCGAAATGGCTTATGTCACTAACAAGGGTAATAATTTATATATATAATATTACAGGTGAATGGCTTGGATTCTACCAGTTTGTCACGTTCCGAGGGAATGCTTGACCTAGAATTCACCCTTGGAAGACCCATTTGGCAAAAAGACCACGCAGAATCATCCAGAGAGTTAACTCTTTTAAACTGCTGA