Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01532 LG1 17805260 17806524 PREDICTED: WUSCHEL-related homeobox 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   procambium histogenesis, phloem or xylem histogenesis, procambium histogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, tissue development, procambium histogenesis, procambium histogenesis, procambium histogenesis, procambium histogenesis, cell division, regulation of transcription, DNA-templated, procambium histogenesis, signal transduction, procambium histogenesis, procambium histogenesis, procambium histogenesis, phloem or xylem histogenesis, cell division, cell division, regulation of transcription, DNA-templated, phloem or xylem histogenesis
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/A 17805392 synonymous_variant p.Asp191Asp
T/C 17805535 intron_variant
T/A 17805536 intron_variant
C/T 17805967 intron_variant
G/A 17805978 intron_variant
T/A 17806011 intron_variant
T/C 17806028 intron_variant
G/C,* 17806096 intron_variant
A/G,* 17806119 intron_variant
C/T,* 17806120 intron_variant
C/A 17806140 intron_variant
A/T 17806187 intron_variant
T/C 17806197 intron_variant
C/T 17806247 intron_variant
G/A 17806408 synonymous_variant p.Ser39Ser
G/A 17806434 missense_variant p.Leu31Phe
G/T 17806442 missense_variant p.Ala28Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01532.1
MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDSTTSITSPPVTTFDLKSFIKPESASRKLGSSHDNKRDPSSPQGQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLVSPSFSCSVITSLDTTKRGEVVERDEEDSPLKKCRSWAFEYLEDQSWSSWKEEEHRTLELFPLHPEGR*


CDS Sequence:
>Vu_01532.1
ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTCGGCTGCAAACGCTTACGACCCCTTGCCCCCAAGCTTTCCAACACTGACTCCACTACCTCCATCACTTCACCTCCTGTCACAACTTTCGACCTCAAGAGCTTCATCAAACCAGAAAGTGCTTCCAGAAAACTTGGATCCTCTCATGACAATAAGAGAGACCCTTCTTCACCTCAGGGCCAGGTGGAAACGCATATTCCAGGAGGGACGCGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTATAGAGGAGGGATGCGAACACCGAATGCTCAACAGATAGAGCAGATCACAGTCCAACTAAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTCGGCCTTGCTCATAGTCCTCGTACTCCCACCACCCTAGTGTCACCTTCCTTCAGTTGTAGTGTAATAACCTCTTTGGACACGACAAAACGGGGGGAGGTGGTGGAAAGAGACGAAGAAGATAGCCCTTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGACCAAAGTTGGTCATCATGGAAAGAGGAGGAACACAGAACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA


Promoter Sequence:
>Vu_01532::LG1:17806524-17808524(-)
ACATTATTTTATCCCATCACTTGCCAAAAATTCCACAGTATCTTCTCACTTTTCTTCTTTCCATCTTTCAACGTCTAACCACTTGCATTTTTATATAATACATAATTTCATTTTCATAACTTCTAAATAATCCATTCAAAATTCTCTTCCATTTGTTATTAAATACTTTATAATAAAAAACATATATATAAATTGACTTTTACGATTTATTTTTTTTGTTCTGAAAAGATCATCCCGAAGACACAAGCATGTGGTCATCCAAATGAAACTATAATTCATTGAATATCTTAAACTAGAGTTTTTTATGCTCCATTTGAGTTCAATTTATCATCATTAAAATAATCAAAGTAAGTTATGATTAATTGAATGGCTAAGCACGCGATCTCCGTTTGTTTAAAGAAATATGTGATAGCCAAAAATTGACAGCTACACCGAGGACTCAATCATAAGCTACACCCTACTCGGGAAGAGAGAATAATTGCCACTCCTCTAATTTAACTTATATATATGTCTCTAAATGTTCATATAATATGCATGCATGCCCCACATCAACGTATATTTATGTAAAATATGATACACCAACAGAATCAACACGTCCATACAAAGTTGAGGAAATCTAAGATACTATATACTTCATGGATGCATGCATATCTATCATGTTAATTATTGTTTAGAGAATCTAATTAACTTACTATTTTTAATAGATTTTCTTTTTCAATTGCACGTTTTACTTTTTCTTAAGTGGAAAAATAAGTAAAATTATGGTTGATATTAAATATTTAAGAGAATAAATTCCTTTAAATTCCAATTATAATTACTATTAATTTAGAACGATTTCTCTTGTATATATATCTCTTTGTAAGAAAACAATCAGTCAAGGAAAGGAATAATAAGATCATTTGAAGAAAATGCGACAGCAGAATAAAATTTCATCTAAATCAAGCTAACAAATGTAAAGAAAATTCACTCAAACGACACATTTGTTTGAGAAAAAAAGTGTCTCTCAGACTAATATTCGCTCAAGTATTTCTGCTTGCATGAAAATGTTTTTCTTCAACTTGAAATAGGACTCGTTTGAACAAAATTTTACTCGTTTGGGCAAAAATACCTTAAGTTTGTTAAGATTATGATACATCAAGTGAATACGTTTTCGTTTGTCGAAAGAAAAATCTGAACACTTTTACAAAAGTTACATGAAATTTTATTTTAAAAACTTCTCCTCGTATAATCTATTTATATATTATATGGTATAACTATGAATGTGGTATAAAACATCCTTATAGGGTGAAAGGGGTTGGTTGGATTTTGAAGTTTTGGGATTGGAGGAATCTTTTTGCATTCCTCACTTCACTCACTTTAATTGATGAGCAAAGGGGTTGAAAGAGAGAGAGAGAGAGAGAGGCCACCGAAAAGCAAGGACACCTTATCATGAAAGCAAGAAAAAAACGACCCGATTTGACGGGCCAACACACCAACATATACCATACAAACATACCACGTACGCATCCCATGATATCCATCGTCCCTACCTTCCTTTCTTCATCTAAGAGAAAAAATGGAAAAACATCTTCTCTTCTTCTCCTATGTCTTACTCTCTTTTCCTTGTTGGTTATGCTGATCTTTAACACCATCTCCTTTTCTAGTTAGTATATAGTCATGTTTTGTTACAAAAACAACTGTAAAAAATGTCACTTTAAGGTTAAAATTTGTATTATGTGCATATGTATATGTCAGTTCGTACTGTGAGTTCTCTTTTCTTTAAAAAAATAGTTAAATCTACTTTTGATTAGAATGAATCACCTTTTAGTTTAATATAGAGAAGTAAATTCCCAAGTCAACTGCACCTCATGATTTGGTCTTGGTTGTTGCAGGCAACACCTCATTTCCCACTTTGTTCACTTTAATCACTGTTTCTTATCATCCACCACCATTCCTCTGTATAAAAACACCAACTGCTCCACCATGTTGTAGCTACTAGTTATAACTCACTAACTATAACC


Gene Sequence:
>Vu_01532(-)
ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTCGGCTGCAAACGCTTACGACCCCTTGCCCCCAAGCTTTCCAACACTGACTCCACTACCTCCATCACTTCACCTCCTGTCACAACTTTCGACCTCAAGAGCTTCATCAAACCAGAAAGTGCTTCCAGAAAACTTGGATCCTCTCATGACAATAAGAGAGACCCTTCTTCACCTCAGGGCCAGGTCCATTTACATATTCTATTCTCTCTAAATACAAGTAAATGCAAATTTAATCAGTTTTATTGAATTCAGTTAGTCTTAAATTACAATTCTAATCATGATATAAAAACTTATTATACAAACTTTAATCACATTACCATACGAGAGACTGTATAAAAAACAGTATATACGTTCATCATGGTCTTAAAACTACTCAAGTTAGTACAGCGTAAAGATTTTTAGACTATAACTGCATTAAGTTTACTTGTCTGTAATTTGTCACAGTAGAAAAATTCAGAAAGAAACTATAACTAGAGTTTAGAACCGTGATAACTGTACTCGTGGCAATTATTTCACGTGGATGGTTTAACAGATTTTGTTTATTTTGTATTATGATGCAGGTGGAAACGCATATTCCAGGAGGGACGCGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTATAGAGGAGGGATGCGAACACCGAATGCTCAACAGATAGAGCAGATCACAGTCCAACTAAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTCGGCCTTGCTCATAGTCCTCGTACTCCCACCACCCTAGTGTCACCTTCCTTCAGTTGTAGTGTAATAACCTCTTTGGACACGACAAAACGGGTATGTCTATACATGTCTGAACAGGATTTTCTGTCACAAACTTTCTATTCAACAATACAAACTATTAGGTGATATTCATGGGAATGTTGTGCATGAGACGGGAAGCTGTTATTGATTAAGAACACTTAGTTAGTTGATGTTATGACATGGTTTTTGATTTATTAATGTTTTTTGTTTTTGAAGGGGGAGGTGGTGGAAAGAGACGAAGAAGATAGCCCTTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGACCAAAGTTGGTCATCATGGAAAGAGGAGGAACACAGAACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA