Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01533 LG1 17830343 17831385 PREDICTED: ethylene-responsive transcription factor RAP2-1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to water deprivation, response to cold, response to water deprivation, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, response to cold
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/C 17830362 3_prime_UTR_variant
C/T 17830643 missense_variant p.Glu166Lys
G/T 17830842 synonymous_variant p.Pro99Pro
T/G 17831078 synonymous_variant p.Arg21Arg
T/A 17831084 missense_variant p.Asn19Tyr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01533.1
MLVMEDRDHCCSNDSTVTNRRRRSRSPTTALEKSKKQRCEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANDDDSVNMSADSIRRKATQVGARVDALQTALLHHAPSHNPTLISLKPDLNEFPKLEDLQD*


CDS Sequence:
>Vu_01533.1
ATGTTAGTCATGGAAGATAGGGATCACTGTTGTTCCAACGATTCAACCGTCACCAACAGAAGAAGAAGAAGCAGAAGCCCGACAACAGCCTTGGAGAAATCGAAGAAGCAGCGCTGCGAGAAACCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAGCCGAACAAGAGGTCAAGGATTTGGTTGGGTTCTTACACGACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCTTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGCGCCAACGATGACGATTCCGTGAACATGTCCGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCTCCATCACGCGCCCTCGCACAACCCCACTCTAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGATTGA


Promoter Sequence:
>Vu_01533::LG1:17831385-17833385(-)
CTAAATTAATTACTCTAAGCTGATTATATTTGGTTATTTATTCTTTAACCGACTTTTTAGACATATTGTCAAATAACATGATTGATAAGTTACAAAATAAATAATTATATATTATTATGAATAATAATCATAATATCAAATGGATAAAATTAATTATTATATATATATATATATATATATATATATATATTAAAAATTTGATATTTACGTATCAACACTCTTCCATTTAACTCTCCAAAGTTTTATTTATTACGTGTATTCAAAAGCGTTGAATAATGAATATAAAAAATAGTTCGATATATTTTCATGTTCAATATGAAGAAATGTATTTTGAAGCTACATTTATGTGAAAAAAAGTTATTTATACGAAAATAAAAATACATTCAATACTAAGTTAAAACATTTGAGATGAGTGATAATTTCCAACATTATAAACATGAAAAGAATTTATTGTATAAAGTTAACAGAAACGCGGCTCATTGTTGTGGCTTGTGCGGGAAACAAAGCACTATAAATTCACACGTTGAAGGTGTATTGTAGTACTATAGTGTAGCTACACGTGGAGTCTGTTATTTTTGCGTGGACGGAAAGTCATTTTCTATTCTCATCCATCCCTCCATTCACCACCGACTTCTCACAGCCATTCGATTTCCTCCACCTGTCCATTCTCTCCCCACCCATTACCAATCGCACAACACAACACACCCATTATCATAATTATCAAACCCCATTAACTTTCTTGCCCTAAATCCCATATTTCACACCACACTTCCTTCTTTAATAAATCAACATGAATGGTTGGTTGGAGATTTCATTTTAATATATAAATGAAGTTATATTTTTTTCTATTTTAAATTAAATTTATAAAGATTGGTTAGTGTTTTGATTTAAATACTCTTAAGTAATGTACAATTATTGAGTGTCTTACAATAAAATCCTCAATCAAAGTTTAATGAGAACAATAACTCATTTTTAAAAATAATTTTTCATTTTTATTTTATTTTAATAAAGATAATATTATTAGAGTAATCACCGAGATATTAACTTGCTTTAAAATCTTTTACTCCTATCATAGTTTTATTCTTTAAAACATGTATTGAAGAATTGAAGGGGAGAAATAATTTAGATTATACCCATGATTTGGCATATTGAATGTACTAAAATAATTATCATGATACAATATTAATGATTTGGGTTTTCTTCATTTTGATGTTAAATATTCTCGATATAAAAAAATATTAAATATTTTATATCAACATGATACCTATTAATGGTAAATAAATAAAATAAACGGCATCTTATTAAAAGGTTTTAGTGAGAAGGTTTGGCACACAATTAAGGAACGTGTGTTGGCTCTTAATTAGGTTTAATTTGAAAAGTGTATTTTGTTGATGTTTGGGTTTTGAGATTCAAAGACAGAGATGGGTGAGAGGCTGTGTCGGCCACCTTGAGTATATCTTCAAGGGATCTGCCTCTCCGCGTGGCACCACTATTACACGACACATGGAAGACTCATTCTAATTTAGCCCTAATCTTAAATTCAAGATTAAATATTAACAACATTTTTCTTCCAGGATATTATATTAGAACAAAATTGTAGAATAAAATGTTATCGTTGGGTTATCTAATTATGTTCGTGATTTTTAAAGAAGATATAAAGTTTAAATTTTATAAATAAAAAACATCAAAAGGAATTTTCAATAGAAAAAAAATGTTAATATGGTTTTGAGATCTATAGTTTTTTTTTATATAATCAAAATAAACTCATTTAAGATTTTATTTTAATTAACACGTATCAGGTTAAAAATAACTTTTACAATAATTACTACAAAATAAAATAACGTAATTAACAAACACACATAGAAGATAATTGGCAAGACAAAAAGAAAATCTTGAATTTCCAATTAATATAAATAATCATAATTTTGTTTTCCGAAAGAACAGGGTCAATGGTCATTTTCCATCTTCGTATAAATAGGACAGATACCACCCCCACCACC


Gene Sequence:
>Vu_01533(-)
ATAGTTCTATGGGCAAGTGTTTTCTGGGTCTGAACGGAATCTCACTTCCCAACTCTTGTATATTTTCACATGCTTCTGCATCATCTTTCTTTCTATATATATTATTCATACACTTGTAAATGATTGCCAAGAAGATAAGATAGGCACAAGCTAGCATATAGTTTTGCTTTTTTATTTAATTTAATCAGCAACCCCTTAGCTAGGCTTATAGTTATAAACATATAGATACAGACATAGCTTGGTAGGTATGTTAGTCATGGAAGATAGGGATCACTGTTGTTCCAACGATTCAACCGTCACCAACAGAAGAAGAAGAAGCAGAAGCCCGACAACAGCCTTGGAGAAATCGAAGAAGCAGCGCTGCGAGAAACCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAGCCGAACAAGAGGTCAAGGATTTGGTTGGGTTCTTACACGACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCTTCCGCGCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGCGCCAACGATGACGATTCCGTGAACATGTCCGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCTCCATCACGCGCCCTCGCACAACCCCACTCTAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGATTGATATTGATTAATCCATGTCAATCAACAATATTTCATTTCCCTAAGTCCTTTATATCAATATATATATAGTTTTGTTATGTAAATATTATAGTTGGGTCTTCAAACTAATTAACCTCTTCTCCTTAATTTATATAAATATAGATAGATCTTGCTTTTGAATTCGCATCTTCAATCACAAAATTACCATTATTATTTTTTAGGGTTTTCTTATACGAACACATTTTGTTTTCATATAGTAATTGGTTCCATGGTTCAATAATATTCTTGTTGTTGTTGATGATGAG