Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01540	LG1	17912674	17913957	PREDICTED: uncharacterized protein At4g06744-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	organonitrogen compound catabolic process, cellular catabolic process, response to wounding, organonitrogen compound catabolic process, cellular catabolic process, response to jasmonic acid, response to jasmonic acid, cellular catabolic process, secondary metabolic process, carboxylic acid metabolic process, carboxylic acid metabolic process
Cellular Component	located in	extracellular region
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
C/T	17913112	synonymous_variant	p.Val282Val
A/T	17913220	synonymous_variant	p.Pro246Pro
G/A	17913268	synonymous_variant	p.Asn230Asn
G/T	17913291	missense_variant	p.Pro223Thr
C/T	17913292	synonymous_variant	p.Val222Val
A/G	17913306	missense_variant	p.Phe218Leu
C/T	17913316	synonymous_variant	p.Arg214Arg
C/T	17913325	synonymous_variant	p.Leu211Leu
G/A	17913352	synonymous_variant	p.Val202Val
G/T	17913486	missense_variant	p.Pro158Thr
A/G	17913508	synonymous_variant	p.Leu150Leu
A/T	17913539	missense_variant	p.Phe140Tyr
G/A	17913604	synonymous_variant	p.Tyr118Tyr
T/C	17913622	synonymous_variant	p.Gly112Gly
C/T	17913785	missense_variant	p.Ser58Asn
G/A	17913824	missense_variant	p.Thr45Ile
A/T	17913886	missense_variant	p.His24Gln
A/G	17913900	missense_variant	p.Tyr20His
G/A	17913918	synonymous_variant	p.Leu14Leu
C/A	17913955	start_lost	p.Met1?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01540.1

MPAKLLVTILYIFLVSLPVYMSPHHVNTDTKNLRSSSSGHRSKGTGGGGGSAKGCNHSNTTPCKKSTTIQAVPASPPLVFADQRLQVVYPVIQKFKSSITSDPLGVTNTWVGSDICSYRGFYCDTPPDNTSATALASVDFNGFQLAASTLDGFIDNLPDIALFHANSNSFGGTISPQIAKLPYLYELDVSNNQLSGPFPSAVLGMTGLTFLDLRFNFFSGAVPPQIFIQNLQVLFINNNIFTQGLPDNLATTQILLLTLANNKFMGPIPRSLPKALASLSEVLLLNNQLTGCLPYEIGFLQESTVFDAGNNQLTGPLPLSLSCLQKVEVLNLGGNLLYGMVPEVVCAGLVNLVNFSLSDNYFTHVGPFCRMLIQRGVLDVSNNCIPDLPFQRSVFECAEFFATPRMCPFIWLYSLIPCKLPFQNPIP*

CDS Sequence:
>Vu_01540.1

ATGCCTGCAAAATTGTTGGTCACAATTTTGTACATCTTCCTGGTGTCTCTTCCTGTGTACATGTCACCACATCATGTTAACACAGACACAAAGAATCTCAGAAGTAGTAGCAGTGGCCACAGGAGCAAAGGTACTGGTGGTGGTGGTGGCTCAGCCAAAGGTTGCAACCACAGCAACACCACCCCATGTAAAAAATCTACTACCATTCAAGCAGTTCCAGCTTCACCCCCTCTTGTTTTTGCAGACCAAAGACTTCAAGTAGTGTATCCAGTAATCCAAAAGTTCAAATCTTCCATCACTTCTGATCCTCTGGGGGTGACCAACACTTGGGTTGGATCAGACATATGCAGCTACAGAGGCTTCTACTGTGACACTCCTCCTGACAACACTTCTGCCACTGCTTTGGCCTCTGTTGACTTCAATGGTTTTCAGCTTGCTGCTTCCACCCTTGATGGCTTCATTGATAACCTCCCTGATATTGCTCTCTTCCATGCCAATTCCAACAGTTTTGGTGGCACAATCTCACCCCAAATAGCCAAACTCCCTTACCTATATGAGCTTGATGTTAGCAACAATCAGTTATCTGGTCCATTTCCCTCTGCTGTCCTGGGCATGACTGGTTTAACATTCTTGGACTTGAGGTTCAACTTTTTCTCTGGGGCAGTGCCACCACAGATATTCATACAGAACCTCCAAGTCCTTTTCATAAACAACAACATCTTCACTCAAGGGTTGCCTGATAACTTAGCCACCACTCAGATTCTCTTACTCACCTTAGCAAACAACAAGTTCATGGGTCCAATCCCAAGAAGTCTTCCCAAGGCTTTGGCCTCTCTAAGTGAAGTGTTACTACTTAACAACCAGTTAACAGGTTGTTTGCCTTATGAGATTGGTTTTCTTCAAGAGTCCACAGTGTTTGATGCTGGGAACAACCAATTGACAGGCCCTTTGCCTTTATCTTTGAGCTGTCTGCAGAAGGTGGAGGTGCTCAATTTGGGTGGTAATCTTTTGTATGGCATGGTGCCAGAAGTGGTGTGTGCAGGGTTGGTGAATTTGGTCAACTTTTCATTATCAGATAACTATTTCACACATGTGGGGCCATTCTGTAGGATGCTGATTCAGAGAGGGGTTCTTGATGTTAGCAACAATTGTATTCCTGATCTTCCCTTTCAGAGATCAGTGTTTGAGTGTGCTGAGTTCTTTGCAACACCAAGGATGTGTCCCTTCATCTGGCTTTATAGCCTCATCCCTTGTAAGCTTCCTTTTCAAAATCCCATTCCTTAG

Promoter Sequence:
>Vu_01540::LG1:17913957-17915957(-)

CGATGAGGAAACAAAAGCATCTGAAACAAGAAACACAGGAAACCTATGAAACAATGCGTTTTTTTTTTGGATAAATTATAACAATAAATGATTATTGGGTTTTTGACAGAGAAAGCCCAAATTATTTGGGCTTACAGAAATTGGTGCAACAGTAACAGACCCAAATGTTCTTTATAATTAGATTTAGAGCCATAGATGAAAGGTTTGTTTGTTTTTTTGTTTAATTCAAAGGAAGGTTTAGAATGTGTGGAACAAATTAAAGAAATATTTTTATATCAGTTTAAGAAGTAAGAGTTTGATCTATTTATTTGATTTAGTATTTGTAAAGATACTTAAAAAACCTGAACCTAATTTATTTTGTTGTAACGTTATCTTTTAGATAAACTTATAGAATTGTTTTTTAATAGAGTAATATATTTAAATTTACACCAAAGTTAATAGGTTTATAAATTGAAATAGATTTATGTTTTTTAAAACAATCGTTATATTATTATTATTATTGCTACTGGATAAGTTTATAAAACCTTCTAAATAACACAATGTACGGTCTTTCAATTAAAAATTAATTTTAAAAGTTTTGGCCTAACTTATATAATAAATAATCTTGACCTAACTTATGGGTAATACGAGCTAAGTTTATACCTATATTTCAAAAAAAAAATCATCCCTAAACTCAATTAGTATTACAACTGGTACCTATAAGTACTAATGTTAACTTTTATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTTTCTTTTCTTTATTTTTTCTCATTTTCTTTCTTCTTACTCATATTTTATCGGATTTGACTAAAAATATCATTAATTTTATTAATAATTTTAAAAAAAACTCTTGACATATGTACTGTTTTTTTTTTAAATTAATTACCCATAAATTTCAAAAAGTTTAATTACTGATGGAATTAAAATAAATAAATTACTGAAATATCAAACTTTTTCAAGAGAAATTTATCTTTTTTTTTAACCTTCTTTTATGTTGTTTTCATTTATAGCTAATCCTATTTTCATTAAATCAAAAGCAAATCTTTTGTATGATGTTAGCATTTTGATCATACAAAATTTGTTTTAAAAAAAGACTTTATAATTATTAATATTTGAGCAACAATTTACAAGAGTAATCTCATGAATATATGAGATATCAAAAATTAATTTGATACATGAATGAGTTTTAATCCAAAACATTGAGACATTGAATTTAATGTTATTGTTGTTGTGATGACTGTGTTATTGTATTATTGTTTTTTATCCATTACCTCCTAACAGATATTAATATCTTATGTGGATTGAATTCATGTAAACAAAAAACTCATCATTATAAAAAAAATAATTATTATATAAATTAATGTTTTAGTTTCATCAAATAGAGAATGTTATCTTACCTTTACCTTTAAGTTTAGACTTTTTTTTTTCTATAATAGGTTTCATTGTTCAAAATTATATAATTTTTTTTCTTCGCTGTATTTGTTTATTCAATATAGGTTTGGTTTGCTCCCCGTATTTGTGTTTCTTCGCTGCTTTTATTTTCTTAAATATATTTTTATGTGATAATAAATAATAAATGTGCTTTGAGATATTTACCTAATTGAACGTAAGAGTTATGAAATACAAAAAAAAAATGATTTTTCGAATGATAATTTTTAAATAGCTTATCAAACATTTGGAATAACATAATTTGAGTGAGTATTTAATCAAATGTTTTACTTTAAATATAAATCAGTAATACAATAAATCGATTTCGTAAATATGGTGTGTGAGAATGAAATATGACGAGCATGTGACGAAACACAATTGTTTGGATTATTATCTGCCCAATGATTTTGCTTATTGAGCATTAAGTGTTTGATGAAAGTTGTCCTAATATAAGCTGCACCTCTTTCTGCCTACTTTGCTTCAAAACCAAACAAAGTGTGTAGAGTTGAGGAGAAAGCAGACAACATGAGTAGC

Gene Sequence:

>Vu_01540(-)