Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01566 LG1 18228554 18229596 PREDICTED: zinc finger protein ZAT10-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to oxidative stress, response to water deprivation, negative regulation of transcription, DNA-templated, response to abscisic acid, response to water deprivation, response to water deprivation, response to salt stress, multicellular organism growth, response to abscisic acid, response to cold, photoprotection, response to salt stress, response to chitin, response to wounding, response to high light intensity, cellular response to hypoxia, response to salt stress, response to water deprivation, negative regulation of transcription, DNA-templated, response to salt stress, negative regulation of transcription, DNA-templated, cellular response to hypoxia, negative regulation of transcription, DNA-templated, response to cold, response to water deprivation, cellular response to hypoxia, response to water deprivation, photosynthesis, cellular response to hypoxia
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/A 18228578 3_prime_UTR_variant
A/T 18228598 3_prime_UTR_variant
C/A 18228638 3_prime_UTR_variant
G/T 18228645 3_prime_UTR_variant
A/T 18228695 3_prime_UTR_variant
G/A 18228819 synonymous_variant p.Ile234Ile
C/G 18228879 synonymous_variant p.Val214Val
C/T,G 18228894 synonymous_variant p.Val209Val
G/A 18228954 synonymous_variant p.His189His
G/A 18228960 synonymous_variant p.Gly187Gly
G/A 18228981 synonymous_variant p.Ser180Ser
T/A 18229033 missense_variant p.Tyr163Phe
C/G 18229042 missense_variant p.Arg160Pro
T/C 18229081 missense_variant p.Lys147Arg
T/C 18229126 missense_variant p.Asn132Ser
G/A 18229128 synonymous_variant p.Val131Val
T/C 18229160 missense_variant p.Thr121Ala
A/C 18229178 missense_variant p.Leu115Val
T/C,A 18229209 synonymous_variant p.Gly104Gly
G/A 18229285 missense_variant p.Thr79Ile
T/G 18229294 missense_variant p.Gln76Pro
G/A 18229327 missense_variant p.Thr65Ile
T/C 18229332 synonymous_variant p.Thr63Thr
G/A,* 18229341 synonymous_variant p.Thr60Thr
C/T,* 18229346 missense_variant p.Ala59Thr
C/G 18229352 missense_variant p.Ala57Pro
C/T 18229360 missense_variant p.Gly54Asp
A/G 18229386 synonymous_variant p.Ala45Ala
A/G 18229392 synonymous_variant p.Tyr43Tyr
G/A 18229460 missense_variant p.Pro21Ser
G/T 18229514 missense_variant p.Leu3Ile
T/C 18229526 5_prime_UTR_variant
T/G 18229541 5_prime_UTR_variant
A/G 18229542 5_prime_UTR_variant
T/G 18229577 5_prime_UTR_variant
C/T,* 18229596 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01566.1
MALQALNSPTATTPSFPFHDPTIPWAKRKRSKRSRDHPSEEEYLALCLIMLARGGAATATDPTPTHRHITASPPPQLPTPDPSSKLTYKCSVCDKTFPSYQALGGHKASHRKLALPDDQPTSSGITATSTVNTAGGGRAHECSICHKSFPTGQALGGHKRCHYEGNNGNGNSVVTASVGSTHTVSHGHHPHHRDFDLNIPAFPEFSTKVGEDEVESPHPVMKKQRLFVIPKIEIPQFQ*


CDS Sequence:
>Vu_01566.1
ATGGCTCTCCAAGCTCTCAACTCACCCACAGCAACCACTCCGTCTTTCCCTTTTCACGACCCAACCATCCCATGGGCAAAACGCAAGCGCTCCAAGCGTTCCCGCGACCACCCTTCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGCGGCGCCGCCACCGCCACCGATCCCACACCAACCCACCGCCACATCACCGCTTCACCACCGCCACAACTACCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCTGTTTGTGACAAAACCTTTCCCTCTTACCAAGCTCTCGGAGGACACAAGGCCAGCCACCGTAAACTCGCCTTGCCCGACGACCAGCCCACCTCCTCTGGCATCACCGCCACCAGCACCGTCAATACCGCCGGAGGCGGTCGTGCCCACGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCTCTCGGTGGACACAAACGTTGTCACTACGAAGGTAATAACGGTAACGGAAACAGTGTGGTAACCGCCTCTGTGGGGTCCACTCACACCGTGAGTCACGGCCACCACCCCCACCACCGTGATTTTGATCTCAATATCCCGGCTTTTCCCGAATTTTCAACGAAGGTGGGAGAAGACGAGGTGGAGAGCCCTCACCCTGTGATGAAGAAGCAGCGTCTCTTTGTGATTCCCAAAATTGAAATCCCTCAATTTCAGTAA


Promoter Sequence:
>Vu_01566::LG1:18229596-18231596(-)
TTCTCCTAAAAAAAGAATTTCATGAAGAAAAAACAAACCAATAAATCTTCAATTATTTTTTTCCCTTTTTTTCTTATATTCTCTCACACATGGTTAATGTTGTGTTAGGTGAGAGGATGCTACACTCTACTCAACTTGTGTTTTAGTGACACATATTCAACCCACACAGTACACAAACATCTAGATGCTTCTTCCTTCCTCTTTTTTTCTATACCTCTCTAAGAACATACCACATCATACTGCCTCATACACCAAACATCTCATATTTAATATTTTTTTTCATGTTTTTTTAATCATATAACTTTGAAAATAAAAAAAATAAGTATTATTAAGTTTTAGGTATATATGCTAGTTTTATTCATTTTCAGATTACCATTACAAAATTATGTACCATTTAAAATTCAGATAAATATCATGTTTCACATACATCTTTCTTTAAATTGACAAGAAAAATCCAACAAGTGATTTGATAATGATATCTATAATACAGTGATATTCTGGGTATTTCTTGATGAAAGAAATTTTAATTGTATTTTTCTTCTTCTAAAACATCATAGTAGTTGGATATCTCCAAAATGTTATTTGATAGTTATTTTTATAATTATAACAATAAACATTATAATATTACATGTTAAGACACAATAACACGTTATATTTAAATTATTGTGCACAAGATTGCAACTTTAAATCAGTTCAGGGACAAGACAATAAGACAACTGGGCTTTTATAAATTATGTCTAATTTCTATCATGACATGATTAATGTATATTTATATGTAAATCAATCAAATAAGAAAACTTTTAAGTATTAGTACAGTTAAAATAATCACTATATTTACTTTTGCTTATCAATGATATCGTTTTAATAACACAAACTTCCAGGTTTTTTTTTTATGAGCTCATCAAAAGCAATAATTGTACTCTCATTACACATATAGAATTACTGATATACAATACAACATAATATAATATATAAGTAACATCATCTTAAGAATGTCATGGAAATACAAATATAATCAAGCACAAAAAAGAATAAATTATCATAAAATATTTGATAATTGAGGAATTGGTTAAAATTTAGGAGAGCCCATTTATAAAAAGAATATACTTAAAACTAAAAAAATATTATTTTAATATATTATATGAATATTTAAAATTGAAATAAATTACCTAGATAATTTATTCATTTATAAATAAATCTAACAACATAATTTATAGTAAAAAAGTATGTTGAAATGTTAAAATGTTAACCTAGTAGTAAGTCAGAGCTTACGAAAAAGTCTGTGAGAATTAAAGAAAGCGAAAATGTTCTGTGATGTAAATTCCGACATGGAGTGTCGAATATGAAACGAGAGAGAGGTTGAAGAAGTAAAAGAAAAAAAAGAAAAATAAAAAGAATGAACGATGAGTTTCCAAATTGCAAGATAACAGAGCTTTTAAAGGTCGGCCGAAAAGATGTTGACAAAGAAAAGTATGGTTCGGTTGAAGATTCTTTACGGCTGTCTTTAGATCGGAGTTTACGGTTTTGTTTAGATTGGAAAAAAGATTTGAAAGAAAGTGAATAAATAGATTTGATTTTTTTTTGAAATTATTTAAATAAAAAAAATGTAATTTGAATGTATTTCAAGAAACAGTGTGTGTAAATAGTAAGTAGAGCTTACGTGTGGAGGCTGCTGTATAGAAAGAAGAAGTCTGTTTTGGGTGGAAGTTTCTCTGTTTTAGATTTTGACTAGGAGCTTTGAATTTGGAAGCAGTCTACTCTCACACTCCCACAGTGACACCTCATTGACCCACCTCAGCTCACTCTTGCCCACCAAGAAACTCCCCAAAACGTGCTCCACTATAATCGACCTCTTTTTCTATCTTTTATTTCCAAAATAAACAACTTAAATAAATGATTTTATATTTAAAATCTTACCTTGCACACCACACCACTCTCGTCACGCAACTTCCTTCAATTCTTCCTCTCCTTATAAAAACACCAAACCCACTCTCACTCCT


Gene Sequence:
>Vu_01566(-)
GACTCACTCTCACACCTTCAATTCTTTTCATTCTTCTTTCTCTTATTCGTATCCTATCAAACACTCACTCACTCACATGGCTCTCCAAGCTCTCAACTCACCCACAGCAACCACTCCGTCTTTCCCTTTTCACGACCCAACCATCCCATGGGCAAAACGCAAGCGCTCCAAGCGTTCCCGCGACCACCCTTCCGAGGAAGAGTATCTCGCTCTCTGCCTCATCATGCTCGCTCGTGGCGGCGCCGCCACCGCCACCGATCCCACACCAACCCACCGCCACATCACCGCTTCACCACCGCCACAACTACCCACCCCAGATCCTTCCTCCAAGCTCACCTACAAATGCTCTGTTTGTGACAAAACCTTTCCCTCTTACCAAGCTCTCGGAGGACACAAGGCCAGCCACCGTAAACTCGCCTTGCCCGACGACCAGCCCACCTCCTCTGGCATCACCGCCACCAGCACCGTCAATACCGCCGGAGGCGGTCGTGCCCACGAGTGCTCCATCTGCCACAAGTCCTTCCCCACCGGACAGGCTCTCGGTGGACACAAACGTTGTCACTACGAAGGTAATAACGGTAACGGAAACAGTGTGGTAACCGCCTCTGTGGGGTCCACTCACACCGTGAGTCACGGCCACCACCCCCACCACCGTGATTTTGATCTCAATATCCCGGCTTTTCCCGAATTTTCAACGAAGGTGGGAGAAGACGAGGTGGAGAGCCCTCACCCTGTGATGAAGAAGCAGCGTCTCTTTGTGATTCCCAAAATTGAAATCCCTCAATTTCAGTAAAACTGGGTTGAATTTTCTCTTTATGACATGATTTTTGTTTATCTTGATTTTCCAATTATTGGGAGAATTTTGAGTGCTATTACTTGATTTTGTATATAGTGCTTGGAGTTTTGTTGGATCTTACAGGGCCAGTTCTCCTGTTTAGGTTGTACTTTCTACGCTGCAGATTTTCAATTCAATTTATTTATTTATTCATTTATTCCATTCGATAATTTTATATAATTGAAAATAATCAAAAATACATTTATCT