Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01615	LG1	18900050	18901769	PREDICTED: homeobox-leucine zipper protein HAT9-like isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, shoot system morphogenesis, regulation of transcription, DNA-templated, response to bacterium, defense response, signal transduction, regulation of transcription, DNA-templated, shoot system morphogenesis, response to bacterium, tissue development, regulation of transcription, DNA-templated, response to light stimulus
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
G/A	18900198	missense_variant	p.Cys50Tyr
C/A	18900324	missense_variant	p.Pro92His
G/A	18900557	intron_variant
G/A	18900711	synonymous_variant	p.Leu174Leu
T/C	18900760	splice_region_variant&intron_variant
C/T	18900795	intron_variant
T/A	18900822	intron_variant
T/C	18900825	intron_variant
G/A	18901033	intron_variant
C/G	18901154	intron_variant
A/G,*	18901170	intron_variant
A/G	18901303	intron_variant
G/T	18901362	intron_variant
A/G	18901389	intron_variant
G/T,*	18901419	intron_variant
A/C	18901425	intron_variant
G/A	18901435	intron_variant
G/A	18901566	synonymous_variant	p.Lys227Lys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01615.1

MSFDETPNTGLGLGLGLGLGLGLVTFHDQSENCMKSDAHNIRRVENPSDCNKTYPSLTLGPPEDDDHDEVKNDRPSSKTESYEYFRAQVSSPSVVSSFSNSSSIKRERDQATGEEFDVDLENVQTRVADADEDGNPRKKLRLTKEQSAILEETFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDLLKKCCDSLTEENKRLQKEVEELKSMQAMSVPLYMQIPAATLSLCPSCERICGSKSDDENTNNNTSSLLFPSKTHHHHFYKSNYPFSHSSSAAC*

CDS Sequence:
>Vu_01615.1

Promoter Sequence:
>Vu_01615::LG1:18898050-18900050(+)

TCCAAAGATACAAATTTTCTTTGGAAGACTCACTATTAAGTACTAATTTCATTATCGACAAACAAAAAATTGAAGGTCGTCTCCTAATACATGATACATTGAAGCTCTTTACTAGTCGTGAACATGTAATATGTAAAGCTTGGAGGCTGGTGTACTGTGTATGACTGAGTACTTCTCGATGATATCAGTATAAAACTTGTCCTGGGACGAGTACATGTCAGACTACTAAATAAAAAATGTACTCGGTCCATTCCTATTCGACTAGTACAACATCGGACAAGATACTTAGTCACTATGGTCCATATGGTTACGATGATTCAAAAGCTAACAAGTATTTAGGCCAATAAGCCCAAGCTTATCCAAGTAAAAGGCCATAAACAGTAAGTATAAATAGTATATTTCACGAAGTATGTTAAGTACTTTTAATTAGTTACATATTTATTGCTTGCTAACATGAGAAACTAACTTGAAAATCAAAGTGTTTTCTACAACCAGAACACTCTTTCATCTTAGAAAAAATGAATACTCAAATAGAGGACCAGTATTTTAAAGACTGAAGGTTGAAAACAATTAAAGAATCTCTAAATATTTTTACAAAATATGTAAAAATACTTTACATTAATTTTAAATGTCACTCATTGAACATTCCATCAACTAAGTCATAATTTAAACCAAATATATATATAAAAGAAATTATTTTATAAAAAAAGTATCTCTGAAAAAGTAAATAGTGTAAAAGTATTGAATATATTTTATAAATTATTTTAAAGTTCTTTTCACATTTGTTCCTTTTTTTCTTCTAACTTTTTGGAATATAAACTAATATGCTTGTGATAAACTATAGTTGACCTTATGAGTTTTTACACAATGTAGAAATCTAACGGAGATTCCCCATTACATGAATATAAAAAGCAGAGTAATTAATCACTACATCAACCTATCAAATTCTTACTACGTATTTGCAAATACATAATTCATATATATAACTTAATCATATTCTTTCTATCCTTTAGGTATCACAACTACGTAATTTGATTCTTCAGTTTCTAATTATACTATGGAATCTAACCCTTTTAAATATTGCAATTTGTGTTATTTTAATCCTTATATTAACATTTAGATTTTTACTGTAAAATTCAGTAACTTAACACTCGATATAATAACATCATAATTCACGAGTTACACTTACACTAATTAAAAATTTAATTTTTCAACTATCATAAACATGAGGTAGTAAAAGTAAAATCAAAACTTGGCAACATATGACTGGACACCACATCACGTCACAACCTAATATGATTTAAAAAAAGAAATTAACAAAGAATAACAGAATATTAAAAAGGAAAAACAACAACAAAATCACCTTGCAATAATACTTAGAAAATCCGATTTGTTCATTGAAATTTAAATATACGAAATCACATAATCAAAAGTTGAATTAAAATCTAGTTTAAAAGATAAAAAGCATTTTAAAGGAAGAAAAATAAAAAAGAAAAGTTGGCGAAATAAAAAAACCCAGGAAGAAAAGTAGAAAAGTGAAAAGGTTAAAAGAGAAAAAAATATTCTCTCCATGAAATATGCTCCATATTGTGCGTGCTATCCACTTTCCACGTGATTCCACGTATACTACATACCATATACACTTCATCATGATTCAATTCCTTGTTATTTTCCAGAACATGTCCTTCTTCAAAAGAAGATGGAGGAGTCATTAACTTTCCCACGGTCAACTTATGAGCCAAAAAGCACACAAAAAGGAAACTAATTTCACTAATTTCATATTAATTTTCCAGAATATAATAACCTCATTTCTGGCCTAATAATAAACAAGCAAATTAGACCCCACAAATGCACAAACCCAATCATAATAAATGCTCTTCATTCACACAATCTCACACCCTCTTTTACAACTCTCTTTCATCTATATATGTTCACAACACTACAACCTCTGCAACAATCAAACCCTTCAACACTTTCCACCTTAACAATTCATCATATCA

Gene Sequence:

>Vu_01615(+)

ATGAGTTTTGATGAAACACCAAACACAGGACTTGGTCTTGGTCTTGGTCTTGGCCTTGGTCTTGGTCTTGTTACCTTCCATGATCAATCAGAGAACTGCATGAAGAGTGATGCCCACAACATCAGAAGGGTGGAGAATCCATCAGACTGTAACAAGACATACCCTTCACTTACTTTAGGACCACCAGAAGATGACGATCATGATGAAGTGAAAAATGATCGACCAAGTTCAAAGACAGAGTCCTATGAATATTTTCGGGCACAGGTTTCTTCTCCCAGTGTGGTTTCTTCATTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCACGGGAGAAGAATTTGATGTAGACCTAGAGAACGTTCAAACAAGGGTAGCAGATGCTGACGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAACCTTCAGAGAACATTCTACTCTCAATCCGGTACGTACTTATACACTAATCGTGGAAAATAATAATACGATCGATATCTAATCATAATTTAGTTTGATTCTCTAATTTAGTTTTAGATCTTTAATGATCACTAATTAAACTTTTGATTCCCTTTGTGGTTTTTTCCTCAGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGAACCAGACAAGTAGAAGTGTGGTTTCAGAACAGGAGAGCCAGGTAATTTTTACTGCTACCCTATTTTGCTTTTCTTTACCACGTTTCTCTGTAATTAGACCTAAGTCTTTATAAGAAAACTAAATAAAAATATTTGAAAAGTAATTTAAAGAAAACTTTTAGAGGAAATTTAAAGAAAATGGATCAAGTTACACCAGCAGAAATTTAAAGAAAATTATTTCTCTTTTCTCGTTTATTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATAATAGAGGAAATATCAAATTATTCTTGGAATAATAGTTTTATTTTTTATATTTCATCTTCTTTTAATCTAATCGCAAAGTAATTTTTTATGAAAAGAAAAAAAGTGAATTGTTAATTTTTAGAGTGACTTGATCTCTTTAGATCTCTCTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATAAAGAAAAGGGATAAGTTACTTGTAAATTAATTTTATGAAAGTTATTTCCTACTTTAGTATGTTTTAATATGTAATTGTTGTTAGAAAAAAAGAATAATTGTAAGTAACTTGGTCCCTTGTATATGTAATGTAAGTAATAGCATTTTAGTGAAGTTTATGAAATACTATTGAAGCAAAAATGAGTGGATAATGATTAATTAAAAAGGTTGTAATAAGATATGTAATTTGATGCACAGGACAAAGCTAAAACAAACTGAGTCAGATTGTGATCTATTGAAGAAGTGTTGTGACAGTCTGACAGAAGAAAACAAGAGGTTGCAAAAGGAGGTTGAAGAACTAAAGTCAATGCAAGCAATGTCAGTGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTATGCCCTTCTTGTGAGAGAATTTGTGGTAGTAAAAGTGATGATGAAAATACCAACAACAATACTTCTTCATTGCTTTTTCCTTCAAAAACACATCATCATCACTTTTACAAAAGTAACTATCCTTTCTCCCACTCTTCGTCTGCAGCATGCTAA