Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01648 LG1 19324708 19326438 PREDICTED: putative GATA transcription factor 22
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cytokinin-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, plant organ senescence, response to light stimulus, response to cytokinin, regulation of transcription, DNA-templated, regulation of photoperiodism, flowering, positive regulation of chlorophyll biosynthetic process, positive regulation of chlorophyll biosynthetic process, response to gibberellin, regulation of seed germination, positive regulation of chlorophyll biosynthetic process, regulation of seed development, regulation of carbohydrate utilization, cytokinin-activated signaling pathway, negative regulation of flower development, chloroplast organization, positive regulation of chlorophyll biosynthetic process, regulation of photoperiodism, flowering, regulation of transcription, DNA-templated, plant organ senescence, circadian rhythm, positive regulation of chlorophyll biosynthetic process, negative regulation of flower development, gibberellic acid mediated signaling pathway, response to cytokinin, negative regulation of gibberellic acid mediated signaling pathway, response to cytokinin, regulation of photoperiodism, flowering, negative regulation of gibberellic acid mediated signaling pathway, response to nitrate, negative regulation of gibberellic acid mediated signaling pathway, response to light stimulus, response to gibberellin, regulation of photoperiodism, flowering, response to cytokinin, regulation of seed germination, gibberellic acid mediated signaling pathway, negative regulation of seed germination, negative regulation of seed germination, regulation of seed germination, positive regulation of chlorophyll biosynthetic process, regulation of photoperiodism, flowering, response to red light, regulation of gene expression, negative regulation of flower development, response to auxin, regulation of photoperiodism, flowering, response to cytokinin, regulation of seed development, cytokinin-activated signaling pathway, regulation of photoperiodism, flowering, response to auxin, regulation of seed germination, negative regulation of gibberellic acid mediated signaling pathway, response to cytokinin, regulation of photoperiodism, flowering, negative regulation of flower development, chloroplast elongation, negative regulation of gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, regulation of photoperiodism, flowering, positive regulation of chlorophyll biosynthetic process, response to cytokinin, regulation of seed development, positive regulation of chlorophyll biosynthetic process, regulation of seed development, gibberellic acid mediated signaling pathway, regulation of photoperiodism, flowering, regulation of chlorophyll biosynthetic process, regulation of chlorophyll biosynthetic process, negative regulation of flower development, response to cytokinin, regulation of chlorophyll biosynthetic process, cytokinin-activated signaling pathway, positive regulation of chlorophyll biosynthetic process
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   zinc ion binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
T/C 19324738 synonymous_variant p.Leu283Leu
C/T 19324752 missense_variant p.Ala279Thr
A/C 19324777 synonymous_variant p.Val270Val
T/C,* 19324881 missense_variant p.Thr236Ala
C/T 19324915 synonymous_variant p.Gln224Gln
T/C 19325005 synonymous_variant p.Ser194Ser
T/A 19325037 missense_variant p.Arg184Trp
C/G 19325103 intron_variant
G/A 19325230 intron_variant
C/T 19325246 intron_variant
T/C 19325313 missense_variant&splice_region_variant p.Lys173Arg
G/T 19325728 intron_variant
G/T 19325733 intron_variant
A/T 19325735 intron_variant
A/C 19325739 intron_variant
G/C 19325744 intron_variant
T/C 19325750 intron_variant
C/T 19325816 intron_variant
A/C 19325829 intron_variant
T/A 19325830 intron_variant
C/T 19325917 intron_variant
C/A 19326028 intron_variant
T/G 19326033 intron_variant
T/A 19326041 intron_variant
A/T 19326094 intron_variant
C/T 19326095 intron_variant
A/T 19326226 intron_variant
T/C 19326239 intron_variant
G/C 19326242 intron_variant
G/A 19326423 missense_variant p.Leu6Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01648.1
MTPYSLHPPPPSLQPQTQIFISSNNQDCPTFFNIFDPRKTIQIGGFTQSYQQDEKMVILHDGSSSNNLNSPEPVTVDPISSRNEGNLGSYRMDEEDIKHSDGSGKWMSSKMRLMKKMMRRSMSPTSDRLNPQGQESRYSQRSPRNSSSSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNGLVTPINSVCAKTRVYNKEKKSRANHFAQFKNKYKSTTTTTAASAGSSEGLRKIEYFKDFAISLSSKNSSFQQKVFPRDEVAEAAMLLMELSCGFVH*


CDS Sequence:
>Vu_01648.1
ATGACTCCTTATTCCCTCCACCCACCACCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTTCTAATAATCAGGATTGCCCTACCTTCTTCAACATCTTTGATCCAAGGAAAACCATACAAATTGGAGGCTTCACACAAAGTTATCAACAGGATGAGAAGATGGTAATATTGCATGATGGATCATCAAGCAATAATCTGAATTCACCTGAGCCAGTTACGGTTGATCCAATTAGCAGCAGAAATGAGGGTAATTTAGGGTCGTACAGAATGGACGAAGAAGACATAAAACACAGTGATGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAGATGATGAGAAGGAGCATGAGTCCAACCTCTGACAGATTGAATCCACAAGGGCAAGAAAGCAGATACAGCCAAAGAAGCCCTCGCAACAGCAGCAGTAGCACCACTAGGGTTTGTTCGGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGGTTTGGTTACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGTACAACAAGGAGAAAAAGTCTCGTGCAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACTACTACTACTACTGCTGCTTCTGCAGGCTCATCTGAAGGGCTGAGAAAGATTGAATATTTCAAGGATTTTGCCATAAGTTTGAGCAGTAAAAACTCATCTTTCCAACAGAAAGTTTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTAATGGAGTTATCCTGTGGTTTTGTCCACTGA


Promoter Sequence:
>Vu_01648::LG1:19326438-19328438(-)
TACTTCCGGAATAGGTGATGCAAATTTAAGTCATTTTTATTGAATTTGAATTTTAGATATAATCATTGATATATAAATAAATATAAATTATAATACATTACATGTTTTAAAAGTAATATTACTTTATTTTTTTAAATGTAATTATTAAATTATTAAATTATTAGTCTATCTTAAGTTTATTTAAACTGTGTACTCATAGAACGATACACTATTAAAGAAGATTAGAGGATAAATTTTTTGTTAATTGTGCGTGTTCACTTCAACGGATTTAAGAATATTTGTGAAAGAAGAAATGAGTTAGAGATTAAATGAAGAGATTCATGCTGATTTATTGTGTATGCAATATCACATTACTAAACTCTCATGGCTTTTGGAGTGCTTTGTGTTATATGTGAATCGATTTTATGATGACGGAATCTATTTCATAAGACGAAACCAATTTCATGAATGGAAAACAAATTCCAAACTATGAGAATCGATTTTTTACTTTTATAATGCATTATGTGTATAGATGTGATATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATATATTATAATAATAATAATAATAATCATCATAATTACTTTTATAAAAGTAATCATAATAATAATTACTATTATAATAATAACAATAATAATATATTAATTTTAATTATAAGAATAAAATAGTAATATTATATTTAAATCTATTAAATGATTATTTTATCATGAGTCAAATAACTCACAAAACTTTTACAAACTTTATCCTAAATTCTTCCACTTTCATTTTCAAATCTCTTTTAAGAAAAATTGTCTTTAAATCCGTTCAAATTTATACTTTTTCTTCAAATCTATCTTGACAAAAGAACTGGACAAAAAATTATTCAAATCAATTTAGGTCATAACATTTTAGTTGGCGTGACACATGTTTTACTAATTTTCAAATGTTGTTCATCTAATTTATTAAAAAAAATCGTGAGGCTAAGTTGAATATTGAGTAGTTTGTTGATGATTATAGAAGAAACTATGCATCTTCGTCGAAAGAAAAAAAAAGAGAGAATATTTACCTTAGTTATTAGCACTGAATCACAACATTAACAATGGTTTTCGGAAGCTTTAAACAGTAAAACAAGTTGTGGATGTTGGTTTGGGAGGCCACAAGAAAGTAATTAAAGGAGAAAAAGAGTGATTATTAATTGGAAGTATTTCAAAACCCTTCATCATTCTCAACATTATTTGAAACTTTAGGTTCATTATCATCATCATCATCATCGTGGCAGGGACCATGCATGTTTATTTTGAGATTTACAGGGTCTACGAATAACTCATGGAATAACCACCGAAAGGCCAAGGTCTCTTAAAAGGCAAGTCAGACAACAAAATTGCAAGTGGGAACGACAGTGACTCAGATTGTATAATTAGATTTTGAACTTGGATTCATCTAAAGACAGTTAAAAATAATATAACCAAACAAAATTCATAAATCTATTATATCAGTGTTTTATAGGTTGGAAGTGATATCAAAGAAAATTTTAATTAATCACTTAATTTGGAGTGATGTTTCATTCCTATATATTATCTCCATATTTAATCTGGTTGAAAAACACATAGTTGCAGTCGCTTCTTATTTTTGATAATTTTTCTTGAAAAAAGCATAAAATAATATTTATTAATATATAATTTGACAGGAGGACAGAAAAACTGCAGAAATGGTTGAATTTGTCGTACTAGAGGAGGAATTCTGGAGTAGTAACACTGTCTTGTCTCTTGTTAATGTATTTTGTTTTGTATATGAAAGTAATCACGTGAATGCCTTGCAGCAGACAACTCTTCTCTTTTTAGCCTCTCCTTCCGTTTATAAGAACCCTACCACCCTATGATAACTCTCTTTCTCATTCATTTCTCACTTCTTCTTCTTCCTTCCCTATCCCTCTGTACTCTCCACTGTCCATTACTTTTTCATACTTCACATCACACTTTCTCTCTCTCTTTCTCTCCATATCC


Gene Sequence:
>Vu_01648(-)
ATGACTCCTTATTCCCTCCACCCACCACCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTTCTAATAATCAGGATTGCCCTACCTTCTTCAACATCTTTGATCCAAGGAAAACCATACAAATTGGAGGCTTCACACAAAGTTATCAACAGGTATAACATATCATATTCATATTCATATTCAATCCCTTTTCATATGTTCTGCATATTTATTTCATCAAGATTTTTCATTACTTTAACTTCTTTACCATTAAATCACACCCTTCCCCCTTCTTGGATGTTTTAGCTTTATCATATATATCTATCCATCAGAGAAATATTAGCTTGCTAAGCAACACTTGTGTCTTTAATTAATTAACAGGAAAAACTAATATTACTTTTGCTTTAAGAAAAAAAATTCTTAGTAGGTTACTTAACCTAATTTTACTGCATATATGTTTGCCTTGATTAATTTCATCATCTTGATTGATTAATCATTTGTCTCTCTTTACACTAGGTCAAATTTATTCTTCTTGTTGGTAATCTGATTACAGAAACAGTAGAGTTTTGATTTCACTCTCATGCATTAATTCCATTGATTCATTTTCAGTTTTCTTTCTCTTTTCATTTTTTTCTTCATGGCTATCATATTATCTATCATCTTTGTGTCTCTCTTTTTCTTTCACTTAGCTCTGGAAAGTGAAAAAAACATCAGTATCATTTCTAAGCTTATTTTTTCACCTGGGTATAGATCTAACATATATGTTGATCTTGACTGTTAGGATGAGAAGATGGTAATATTGCATGATGGATCATCAAGCAATAATCTGAATTCACCTGAGCCAGTTACGGTTGATCCAATTAGCAGCAGAAATGAGGGTAATTTAGGGTCGTACAGAATGGACGAAGAAGACATAAAACACAGTGATGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAGATGATGAGAAGGAGCATGAGTCCAACCTCTGACAGATTGAATCCACAAGGGCAAGAAAGCAGATACAGCCAAAGAAGCCCTCGCAACAGCAGCAGTAGCACCACTAGGGTTTGTTCGGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGGTTAATCTTTTCCTTTCTAACAAACCCTCTTTTCTTTCAATAGTATAACACTGCAAAAAACCTTAGACAGTACTACCCTATCACACATGAACTTTGTCTGTGTTAAGCATTAAAACTGAGTTTAAATTCTATTGGACAAAGTGTATATATATCATCAAGATAAACAAATGAATGATGATTGTAAAGTTCATTCATTCAGAAGCAACTAGAATTTATATTAACATGCAAGATTTTGGTGGTGCAGTCGCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCAAATGGTTTGGTTACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGTACAACAAGGAGAAAAAGTCTCGTGCAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCACTACTACTACTACTGCTGCTTCTGCAGGCTCATCTGAAGGGCTGAGAAAGATTGAATATTTCAAGGATTTTGCCATAAGTTTGAGCAGTAAAAACTCATCTTTCCAACAGAAAGTTTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTAATGGAGTTATCCTGTGGTTTTGTCCACTGA