Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_01764	LG1	20850915	20851640	PREDICTED: ethylene-responsive transcription factor ERF018-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response to insect, response to wounding, regulation of transcription, DNA-templated, phloem or xylem histogenesis, defense response to insect, cell division, regulation of transcription, DNA-templated, defense response to insect, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding

SNP	Position	Effect	Amino acid change
A/G	20851056	missense_variant	p.Lys48Glu
G/T	20851286	missense_variant	p.Lys124Asn
A/T	20851315	missense_variant	p.Glu134Val
T/C	20851375	missense_variant	p.Ile154Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_01764.1

MVKPAITRVDSSSSSSSSPTSCNDSFSTNNSSAACKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQVKAARAFDAALYCLRGKGASFNFPDTPHRFEMESLKIPCSHQEIQEVAAKFANKVVEILAEEEEDGEVGVQSESMSDHTTHTEINTTFPIYDGGTNNDVRVDQDTMDWTFMNMLDDLNGSDFGLYFEAEKGEFLCPTTHTPLLFHNGDEIEVDDHDHDAFSNHSFLWSWNF*

CDS Sequence:
>Vu_01764.1

ATGGTGAAACCGGCCATTACCAGAGTTGATTCTTCTTCTTCTTCCTCTTCTTCTCCCACTTCTTGCAATGACTCATTCTCCACCAACAATTCCAGTGCCGCCTGCAAGATGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATTCGGCTTCCAAACAGCCGTGAGCGTATATGGTTGGGCTCTTACGACACGCAAGTGAAGGCAGCAAGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCCAGTTTCAACTTCCCCGACACGCCTCATCGCTTCGAAATGGAGTCGCTCAAGATACCCTGCAGCCACCAAGAGATCCAGGAGGTGGCGGCCAAGTTTGCGAACAAGGTGGTGGAGATTTTGGCAGAAGAAGAAGAAGATGGAGAAGTTGGAGTTCAGAGTGAGTCTATGTCTGACCACACCACACACACAGAAATAAACACGACCTTTCCTATTTATGATGGTGGGACAAACAATGATGTTCGAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATGGCTCCGATTTTGGCCTCTATTTTGAAGCAGAGAAGGGTGAGTTTTTGTGCCCCACAACACACACTCCACTACTCTTTCACAATGGAGATGAGATTGAAGTTGATGATCATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA

Promoter Sequence:
>Vu_01764::LG1:20848915-20850915(+)

TTATATAAATAACATAGTTTTGTATATAAATAACATAACTTTTTTAGATAAATAACATAAGTTTTTTATATTACACCGTCAATCAAGGATTAACACGGTTGGACACTTCAAATTATAAGCCAGATTCTCATGTAAGAAAACACTAAACAATACAGATTAAACCACACAATTGAGAAAGCAGAAAAGAAAATGGACAGCAAAAGTAACAAAAAAAAATTACAAAAATAAGAATAAATGAAGAAAAGTATGGGGATGAATACAAAGATGAAATAGATTTAAACATATTCAACCCATCCTATAATTAAAAAATTAAATATTATTTATACCTATAATCATATCCCAAGTCAATGTGATGTTTTTTTTTGCCAAAACAGATAGTGATTCATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAGAACAAATTTAGTAATCTGTCAAGACGTGGTGATTTAAAATTAATTAATTTTTCTTAATCTTGTGAGTGCCTACTGTGATTCTATACAAAATATTTCATTAAATGTGATTATTTCGGCTTTTTAATGGGTATTAGTATAAATTTTTCGAACTAATATAACATAGAGTTTAAAAAATGTATGAAAAGATAAAAAAAAATAGAAAATTTGTATAAGAGATAAGGTGCACTAGTTTTCTAAATTATAAGTATGACTAATGGTAAAATATATATATATATATATATATATATATATATATATATATATATATTAGTAGTGGATTTTAAACCTAACTTTCTCACAAAACCTGTAGGATTAGACATTTTTAATGAGTGGTCCGATAGATTCTAAATCAGCTTGTAAGATGAAGTTTGTACTCACTTATAAATTATGAATTGACCTTATGTCTAATAAATGTGAGACTTTCAACAATATGTACTTTAAGAAAAAGAAAGAATAATGTTGTATTTGATCAAACTATACCTTAAAACAATGGAGAGCTGAAAATTAGCAAATATATGAAAGTTATTCAACTAATATATTTTGAGGTTTTTGTAATTTATTTAATTTGAATTATTGTGTTTTTAAATTAATAGATATTGTAACAAAATAAAAATTTAAATATTAAAACTAAATTTATAAGGTTTTTAGAAGGTTACTTGAAGTAGTAATTTTAAGAAAAGAAGTTCCTAAAAAAAATTTATCAACATATTTATAAGGTTTTATAAAATTTTCAACTAGCAAAGAAAAATTAAAAAGTAACTAAACAACCTTATCCAGCTTGCATAAATAATTTCACCATAGTAAATCCCATTATGTGTCAAATAGTATTTATTCTTTAAAATAACTAATTAACTACAATTAATTCCATTCCTTCTTTTCTTTCAAAATGTATTTATATTCCCTTGTAAGTTAAGCAAACGGACAAATTGAAAAGAGAAATAGAAGGGGTGAATAAAAAAGAGAAAATGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGAGTTGCAAGAGAAAATGGAGGTGCAAATATTATATTACATTGCTTCTGAGTTTTAAAACCAAAACACAGAAAAAAACAAAAATTTCTGATAATAGAAATTACTAGATTTACTTTTGAAAACTAAAAATTTAAAATAAAAAATGTATTTGTAATTTTGTATGGTACATAATATATTTACACAGATTATTTTATGAAGTTGAGGCCAATAATTTCCACACGTGGTGTTTCTTGTTGTTGAAAAATACAAATATCATATGGGACTGAGTTCACGATATCATTCAGCCACGTGCCTACACTCATTGTACGCTCCTTTGATAAACACGTTTAGCCTTCAAACCTTCACCACTCTTCCTCCCTATATAAACCCTTCCGCCGTCAATTTCCCTCAAAACTTAATCATCACAACATAACCAATAAACAAAACAAGCACCCTAGTATAGTACACA

Gene Sequence:

>Vu_01764(+)