Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01791 LG1 21155013 21158786 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of chlorophyll biosynthetic process, maintenance of shoot apical meristem identity, cytokinin-activated signaling pathway, response to water deprivation, regulation of seed growth, root development, regulation of root meristem growth, regulation of root meristem growth, regulation of cytokinin-activated signaling pathway, regulation of root meristem growth, regulation of seed growth, cytokinin-activated signaling pathway, regulation of root meristem growth, regulation of cytokinin-activated signaling pathway, regulation of anthocyanin metabolic process, cytokinin-activated signaling pathway, regulation of seed growth, regulation of seed growth, regulation of cytokinin-activated signaling pathway, regulation of cytokinin-activated signaling pathway, response to cytokinin, primary root development, cellular response to cytokinin stimulus, response to water deprivation, callus formation, regulation of root meristem growth, regulation of seed growth, response to water deprivation, shoot system development, response to water deprivation, regulation of root meristem growth, regulation of cytokinin-activated signaling pathway, regulation of cytokinin-activated signaling pathway, regulation of cytokinin-activated signaling pathway, regulation of root meristem growth, response to cytokinin, response to water deprivation, cytokinin-activated signaling pathway, regulation of cytokinin-activated signaling pathway, regulation of root meristem growth, regulation of cytokinin-activated signaling pathway, cellular response to cytokinin stimulus, cellular response to cytokinin stimulus, cytokinin-activated signaling pathway, cytokinin-activated signaling pathway, cytokinin-activated signaling pathway, response to water deprivation, regulation of root meristem growth, cytokinin-activated signaling pathway, shoot system development, response to cytokinin, regulation of chlorophyll biosynthetic process, regulation of cytokinin-activated signaling pathway, response to cytokinin, primary root development, root development, regulation of chlorophyll biosynthetic process
Cellular Component   located in   cytoplasm, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, phosphorelay response regulator activity, phosphorelay response regulator activity
SNP Position Effect Amino acid change
C/T 21155118 upstream_gene_variant
T/A 21155180 upstream_gene_variant
A/T 21155263 upstream_gene_variant
T/C 21155349 upstream_gene_variant
A/T 21155350 upstream_gene_variant
A/C 21155397 upstream_gene_variant
G/A 21155422 upstream_gene_variant
A/G 21155491 missense_variant p.Val613Ala
G/T 21155617 missense_variant p.Thr571Lys
C/T 21155623 missense_variant p.Arg569Lys
A/G 21155655 synonymous_variant p.Asp558Asp
A/T 21155740 missense_variant p.Phe530Tyr
A/C 21155749 missense_variant p.Val527Gly
T/C,* 21155752 missense_variant p.Asn526Ser
G/T 21155758 missense_variant p.Thr524Asn
T/G 21155763 missense_variant p.Gln522His
C/G 21155916 missense_variant p.Gln471His
G/C 21156092 missense_variant p.Pro413Ala
C/T 21156309 synonymous_variant p.Pro340Pro
G/A 21156312 synonymous_variant p.Asp339Asp
A/T 21156442 missense_variant p.Phe296Tyr
T/C 21156630 upstream_gene_variant
T/C 21156707 missense_variant p.Lys237Glu
G/A 21156762 splice_region_variant&intron_variant
A/T 21156768 upstream_gene_variant
G/T 21156798 upstream_gene_variant
T/A 21156983 upstream_gene_variant
C/G 21157037 upstream_gene_variant
G/A 21157088 upstream_gene_variant
T/C 21157212 intron_variant
A/G 21157264 intron_variant
A/T 21157746 intron_variant
T/C 21157782 intron_variant
C/T 21157843 intron_variant
A/C 21158056 intron_variant
A/C 21158238 missense_variant p.Phe43Cys
C/T 21158439 intron_variant
A/G 21158450 intron_variant
A/T 21158548 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01791.1
MDDFRNEFHKGLHVLAVDDDSTCLKILETMLQKHKYHVTATKNSQTALNLLRGNKNGFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVDDDFKMVMKGIKHGACDYLLKPVRLKDVKNIWQHVARRRKMGSKEQNRSSNQEKANTDSNERGSVATGNSDQNVKSSRKRRDEDDYDNEDQENDHDNEDSSCHKKARVVWNAELHHKFVSAVNQLGFEKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKINCAANRQANMVAALGTTDPSFLRIGSLSGVGHLQSLTGSQQFHNSTFRPFGPGGMAGRLNTSVGVNVHETLQLGHAQNFHKSMHDPFKFQPAITGGNQNNGIQGVPLSTALDQFQHNKGVGIAVSPIQSISPFIDVQPNFSVPNKLPDLIPTSTVGCSPSPVLDVSNNALVLKADSENTQGGGMLFGQPSLASQNSQFSLPLLDHGRCSDIWSNTVQSSGTNSYPAGETFRVRNLSGASSITSLSNPSHYSLKDMHSQGVLIPNNSGQITNNVVPFQGWDDNNDDSTFPSNIFCNSMDSLMDTDGNTSFNSIYNRNTDFSFFDPLLMKPDGVTGLSEENTLKQQQGYIMNHTKSQSNSVANNLGSVEEFVSSMMKQKQDNVKLLEGYLCDNNLSDGTSI*


CDS Sequence:
>Vu_01791.1
ATGGATGATTTCAGAAATGAGTTTCACAAAGGATTGCATGTTCTTGCTGTTGACGATGACTCAACCTGTCTAAAGATTCTGGAGACTATGCTACAAAAGCACAAATACCATGTAACAGCCACTAAAAATTCACAAACGGCATTGAATCTGTTGAGAGGAAACAAAAACGGGTTTGACCTTGTTATCAGCGACGTGCAAATGCCAGACATGGATGGATTTAAGTTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAATGATGTCGGTAGATGATGATTTTAAGATGGTGATGAAGGGAATTAAACATGGAGCTTGTGATTATCTTCTGAAACCTGTGAGACTTAAGGATGTAAAGAATATTTGGCAGCATGTTGCCAGAAGGAGGAAGATGGGTTCAAAGGAGCAGAATAGAAGCAGTAACCAAGAGAAAGCTAATACTGACAGCAATGAAAGAGGTTCAGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCCGAAAGAGGAGGGATGAGGATGACTATGATAATGAGGACCAAGAGAATGACCATGACAATGAGGACTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGAATGCAGAACTGCACCACAAGTTTGTTTCTGCTGTCAATCAATTAGGCTTTGAAAAAGCTGTACCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGAAATATAGGCTTTATCTGAAAAAGATCAACTGTGCGGCGAACCGGCAGGCTAATATGGTTGCAGCATTAGGCACTACAGATCCATCCTTTCTGAGAATAGGTTCTCTGAGTGGTGTTGGACATTTGCAGTCATTGACTGGTTCTCAACAGTTTCATAACAGTACTTTCAGACCCTTTGGACCTGGTGGAATGGCTGGTAGATTGAACACTTCTGTTGGTGTGAATGTGCATGAAACTCTTCAGTTGGGTCATGCACAAAATTTTCACAAATCTATGCATGACCCGTTCAAGTTTCAACCTGCTATAACTGGTGGCAATCAAAATAATGGTATTCAGGGAGTGCCATTGTCCACTGCTCTTGATCAATTTCAACATAATAAGGGTGTTGGTATTGCTGTTAGTCCGATTCAAAGCATTTCTCCTTTTATTGATGTTCAACCAAATTTTTCAGTGCCAAATAAACTCCCAGATCTGATACCAACATCAACAGTAGGTTGCTCACCCTCTCCTGTTTTGGACGTATCAAACAATGCTTTGGTATTGAAAGCTGATAGTGAAAACACACAAGGGGGTGGAATGTTGTTTGGTCAACCTTCATTAGCCTCTCAGAATTCTCAATTCTCACTCCCTTTGCTGGATCATGGTAGGTGCAGTGATATTTGGTCAAATACTGTTCAGTCATCAGGGACAAATTCTTACCCTGCAGGTGAAACTTTTCGAGTGAGGAATCTGAGTGGTGCTTCATCCATTACTTCACTGTCTAATCCATCCCATTATTCACTAAAAGATATGCATTCACAAGGAGTTCTTATTCCAAATAATTCTGGACAAATTACCAATAATGTGGTGCCATTTCAAGGGTGGGATGACAACAATGATGATAGTACTTTCCCTTCAAATATTTTTTGTAACTCAATGGACTCTCTGATGGATACTGATGGCAACACTTCTTTCAACTCAATCTACAACAGAAACACAGACTTCAGTTTCTTTGATCCCTTACTGATGAAACCTGATGGAGTTACGGGATTGAGTGAAGAAAACACATTGAAACAACAACAGGGATACATCATGAACCATACCAAGTCTCAAAGCAATAGTGTCGCTAATAATCTTGGTTCCGTGGAAGAATTTGTCAGTTCAATGATGAAACAGAAACAAGACAATGTGAAATTATTGGAAGGATACTTATGCGACAACAATCTCTCTGACGGGACATCCATTTGA


Promoter Sequence:
>Vu_01791::LG1:21158786-21160786(-)
CTTATTTATATGAAATAAAAGATAGTTATATACTTAAAAGTAATTTAACTATTTTAACTTATATTATATTTTGTCACTATACTTATCTTTTGTATTATTTTCATTTAGAAAAATATTTAATACAACTAAAACTAAAATATTTGTATGAATTTAAAAGTATTTGAAGTTTAAATTAATTAAGATATACTTTAAGAGGTGAAATATTTGTATGTTGTACAAAACTTTATCAATAAAAACATTTGATAAATTGAATTTATAGCTATATTTATATAAAAACACATACTATATTCCTATCAACTCTTTCAATCACTTCTCGAAATCAAATTTATTATTCCAAATTAATTTGTTCTGATTTGTGCCACGTCAGCTTCCAAACATTCAAATTAGTTTTCCCTAGGTTGTGAAGACAAAAGGAACACATTTAGGTACAAGAATATTTGTTTTCTTTTGGAATGATTTCCATAGAATCTCTCAAATAAATTATAAATTCACAATTTAACACAAATAATTATTGACATTTAAGAAAATGGACAGTAAAATCTAAACTACATAAAGTAGAATAATAACAGATACCACAAATGCATAATTGTTGCTCAATAAAATACATTTTGATTGACATCAACAACAAGTTTTTCACTAATTTGACAATCAATAAAACAACTTAATGATAGGAAAAAAATAATCCTTTTTTTGTATGAAAAATAAGAAAGAGTTTTTTTTTTGTGTGTTTTATTGATTTTGGTCAAATACAATATTATTTTTTTTATTCTTCTTGCAAAACATTTTTAAACTACTTATCAAGTCAACTTTTTAATACTAGCTAATTAAATGAGAAAAAAAAAACAGAATTGCGAGAAATATTATATGTTGTAATATTAATTAATATTGCTTTATTACTAACTTACTATTAGTTATATACACCCGTTTTCAATTTTATATAACAAATATTTTGTTTTTCATTTTTTCATATTTAGTCTTAGTAGTACTATTATAGATATAATATGTTTTTTCCTAACCTAATGACATAGTATATAATATATTTTAGTAACTAAAACATGATGAATTCACTTTCTAAAGACAATCTTGTTTTCTTTCAACTAATAAATACTTGTAAATTGTTATATACAATGATCAATAAAATATATAATTCATTTTTATCATGTTATACACTTAAAAAAAATCTAAATATTTTTTAAATCTTATTATAATCCAATCCTTCAAAACATTGTTGCTATAAAAGGTAGTAACTTTCCCATAAATAATATAATTTTTATAATTTATAGTAGTAACTTAATAATAATTTTAAATTTAGAGTAAATTACGATCATATTTATGTTTGATCTCATATTTTTTTCTAGACAAGAAGATAATGCCATAAATAATGTAATGTATGTGAGATAATTAAGGAAATTTGTTAATAGGTAATAAAAAGACATAAAAAATCATGAAAATTATGGAAGATCATATCTGTAATTTGATCTAAGTTGTAGAAGGAAATTATCATAGGTTTCTGTTTGGTTGGGGTGTACTGAAAGCATGAATTTTCTCTGAAAATTTTGAATAGGTGATTCTTTCTCTAAATTTTGATCATATCTGTTCTTTTTAGTATCTAAGAAGAAAGGAAGATCCATCACTATCTTCTATAATATAATTATTGGATCAATGTTTCACGTTGTAAGATTAACTTTCTCTGTGCACACACCAAGTTCAAGATTCTGTATCTTTCTCATTCAACAATTGTTGCACACACTCTCATGTACTACATCACAACTTCACAATCATGTTTATCAACTTTTCAATTGTTCTCTCTTTCTCTCCCTTCATCACTCGTACTTTCATAAAATTTTCTTTTCTTTCTTTTGGGTAACTGTGTTTCATAGATTCTCTGTCATGGGATTTTGGCTTCAAATATTTACAAAAGAGAAAAATCTATTAAAGTTTAGCTAATTTATAGCAGATGACACTTTTTGCAGAGATTTACTGTGGTAGAGAATCATAGA


Gene Sequence:
>Vu_01791(-)
ATGGATGATTTCAGAAATGAGTTTCACAAAGGATTGCATGTTCTTGCTGTTGACGATGACTCAACCTGTCTAAAGATTCTGGAGACTATGCTACAAAAGCACAAATACCATGGTTAGCATCTTATACTCTTTCTTTAAGCTTTATTTATAGTTTTTCATTGCATTATTAAGAGTCTGTGAATTCTACTCTCTGCTCTTTTTTTTGATTTAGCCATTGTTATTTGTTCTATTACTAAAGTAATTTGTTTTGTAAAGTTGAATTTTCAAATTGAGTTTGTTAGTCTGATTTGTTTGGGTTTTCATTTGGCAGATCTTATCATAAGATAGACCTTAAGTTTTCCAGATATGTCAGCTATTTAAAATTATTGTCAATGGAATTATCTGATTTTCTGTTGTTATTTGGTTTCAATGATGTGAAGTTTTGGTGTCATTGGATGCAACACTTTCCCATTGAATTTGGTTCTGCTTGTATCTCCAGTGTAAAATTTTGTCTTTTTGTAATTATATTTACTTTAGTTATGGATTTTGCAGTAACAGCCACTAAAAATTCACAAACGGCATTGAATCTGTTGAGAGGAAACAAAAACGGGTTTGACCTTGTTATCAGCGACGTGCAAATGCCAGACATGGATGGATTTAAGTTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTCATAAGTAAGAAGCCATGATCTTAATTTCAATCTTAAACAGTTCAGTTTTGTGTCCTCTGTATATATATTATTATTAGTAGTTAGATAGTTAATATTTGTGGATATTTCAATATTTGGGTTTAATTTGCAGATTCACTTTGTATATACTTTACACAAGTACTGTTTACTTCATTACTACTAAAGATCTTTAGTATTTTGGGTCTTGTTTTCAGAGCATAAACTGAATTGGTTGCAATGTATTTGATTTGGGATCATAGCAGTGCGTATTGTTGATTTATCGCACAATTTAAGGTCTTCTTCAATTCATCACATAATGCACCTTTGATATACACATGTATAGTAAACCTGGGAAGATTGTTTTGGGATATTAAGGTGTTGCAGCTTCATTTGGATGTTTGATTTGACAATGTTAAATGTTTTTTATATCAGTGATGTCGGTAGATGATGATTTTAAGATGGTGATGAAGGGAATTAAACATGGAGCTTGTGATTATCTTCTGAAACCTGTGAGACTTAAGGATGTAAAGAATATTTGGCAGCATGTTGCCAGAAGGAGGAAGATGGGTTCAAAGGAGCAGAATAGAAGCAGTAACCAAGAGAAAGCTAATACTGACAGCAATGAAAGAGGTTCAGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCCGAAAGAGGAGGGATGAGGATGACTATGATAATGAGGACCAAGAGAATGACCATGACAATGAGGACTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGAATGCAGAACTGCACCACAAGTTTGTTTCTGCTGTCAATCAATTAGGCTTTGAAAGTATGTTCTTGAATTTATCTCTTACTCCAAATCGTCTCAATCTCATTTCCCAGAGCAAATTACACTATCACCTCTTGTTTTGGAATTCACATGATACCCTTTTCTCTGGTTTCCACTGTTAATAGTTTGAAATACATTACACTGCCATTTCTTGTTATTCATTGTGTTGTGTGAATATTATAAGGACCGTTACCGTCAGCATAAAAAGGCTAGAACATTGTGTGAATTTTGAACAATCTCAATAGTTATTTGTACAATTTACTCTGTTTCTTATCAATTGTTCTTTCCTTTATTTTTAATTTAACAAGCTTCTTATGATTATTTGAGTAGGTGATAGCAATCAAATGTTGAGGTCCTTAAGATATGGAAATTGTATTAAGCATTATTTTGAACACTTTCTGTCATGAGCTCCCTGAGGGTGAATGTAATGAATGCCTTCGATCATTACTGATGTTGTACTTCTTGCCATGGAGTGTTCTATTTCTGAATTGTGACTCATGATATTGTTAACCATTTTTTCTGCAGAAGCTGTACCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGGCATTTTTGTGAACTTTTCTTCTTTAGTTATTCGAACATAAACCATTTCACAAAGGAAATCTCACTGTGTCTTTCTATGGCTGCAGAAATATAGGCTTTATCTGAAAAAGATCAACTGTGCGGCGAACCGGCAGGCTAATATGGTTGCAGCATTAGGCACTACAGATCCATCCTTTCTGAGAATAGGTTCTCTGAGTGGTGTTGGACATTTGCAGTCATTGACTGGTTCTCAACAGTTTCATAACAGTACTTTCAGACCCTTTGGACCTGGTGGAATGGCTGGTAGATTGAACACTTCTGTTGGTGTGAATGTGCATGAAACTCTTCAGTTGGGTCATGCACAAAATTTTCACAAATCTATGCATGACCCGTTCAAGTTTCAACCTGCTATAACTGGTGGCAATCAAAATAATGGTATTCAGGGAGTGCCATTGTCCACTGCTCTTGATCAATTTCAACATAATAAGGGTGTTGGTATTGCTGTTAGTCCGATTCAAAGCATTTCTCCTTTTATTGATGTTCAACCAAATTTTTCAGTGCCAAATAAACTCCCAGATCTGATACCAACATCAACAGTAGGTTGCTCACCCTCTCCTGTTTTGGACGTATCAAACAATGCTTTGGTATTGAAAGCTGATAGTGAAAACACACAAGGGGGTGGAATGTTGTTTGGTCAACCTTCATTAGCCTCTCAGAATTCTCAATTCTCACTCCCTTTGCTGGATCATGGTAGGTGCAGTGATATTTGGTCAAATACTGTTCAGTCATCAGGGACAAATTCTTACCCTGCAGGTGAAACTTTTCGAGTGAGGAATCTGAGTGGTGCTTCATCCATTACTTCACTGTCTAATCCATCCCATTATTCACTAAAAGATATGCATTCACAAGGAGTTCTTATTCCAAATAATTCTGGACAAATTACCAATAATGTGGTGCCATTTCAAGGGTGGGATGACAACAATGATGATAGTACTTTCCCTTCAAATATTTTTTGTAACTCAATGGACTCTCTGATGGATACTGATGGCAACACTTCTTTCAACTCAATCTACAACAGAAACACAGACTTCAGTTTCTTTGATCCCTTACTGATGAAACCTGATGGAGTTACGGGATTGAGTGAAGAAAACACATTGAAACAACAACAGGGATACATCATGAACCATACCAAGTCTCAAAGCAATAGTGTCGCTAATAATCTTGGTTCCGTGGAAGAATTTGTCAGTTCAATGATGAAACAGGTGATTGTATTTGTTTCTAGTTTTGGTTTGTTATTGTAGGTTTTCCCTCTGTTTTCCTATTGATTAAAACATGTATAGATCTTTTGATTAGGTTGATACCAACATAGACAAGATAATAGTAACTTATTCGTTTAAGCTTATTATTATGTAAAGCTGTTAAAGTCTTGAAACTTTATGCATGCTTTTTATCAATTTATATATATGCATTACCTGTGATAAATAGTTAACACAATGTCCTGCTAAATTCTCTTGTTATATAATTAGTGAAATAATGATTTAATTGGTTACCCTTTAGCATTTTGCACCTGATTTTTTCCTCCGATCACAGATATCTCACATAACTATGTAATGCAGAAACAAGACAATGTGAAATTATTGGAAGGATACTTATGCGACAACAATCTCTCTGACGGGACATCCATTTGA