Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_01944 LG1 23540930 23543522 PREDICTED: probable WRKY transcription factor 11
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of jasmonic acid mediated signaling pathway, regulation of jasmonic acid mediated signaling pathway, induced systemic resistance, induced systemic resistance, defense response to bacterium, defense response to bacterium, regulation of transcription, DNA-templated, defense response to bacterium, defense response to bacterium, defense response to bacterium, regulation of jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, defense response to bacterium, regulation of jasmonic acid mediated signaling pathway, regulation of jasmonic acid mediated signaling pathway, regulation of transcription, DNA-templated, response to bacterium, response to bacterium, induced systemic resistance, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, calmodulin binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/T 23541009 3_prime_UTR_variant
T/A 23541234 missense_variant p.Glu302Val
C/A 23541496 synonymous_variant p.Pro239Pro
T/A 23541542 intron_variant
A/T 23541545 intron_variant
A/T 23541731 intron_variant
G/A 23541762 intron_variant
T/A 23541903 intron_variant
A/T 23542364 intron_variant
A/T 23542367 intron_variant
T/C 23542382 intron_variant
T/A 23542392 intron_variant
G/A 23542449 intron_variant
T/A 23542458 intron_variant
A/T,G 23542482 intron_variant
T/A 23542546 intron_variant
C/G 23542632 intron_variant
C/A 23542787 missense_variant p.Asp214Tyr
C/A 23542863 synonymous_variant p.Pro188Pro
T/A 23542913 missense_variant p.Ile172Phe
C/A 23543408 missense_variant p.Gly7Trp
A/T 23543436 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_01944.1
MAVELMGFPKIDDQKAIQEAASEGLKGMEHLIRILSHQPSHLNTDLTDVTVSKFKKLISLLNRTGHARFRRAPLQVNPPEPVQTPEPVQTPAPAHNPPSAPLHLPPPQTANLSLPALFASPAPVHHASGSVTLDFTKPHNALRNSKAKSVELEFSKETFSVSSNSSFLSSAITGDGSVSNGKIFLAPPPPPPATSAGKPPAFKKRCLEHREHSDDVSGSGKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHAVQAAMQENAAGVVGLVFEST*


CDS Sequence:
>Vu_01944.1
ATGGCTGTGGAACTCATGGGGTTCCCCAAAATCGATGATCAAAAGGCCATCCAAGAGGCTGCATCGGAAGGCCTCAAGGGCATGGAACACCTGATCCGAATCCTCTCCCACCAACCCTCTCACTTGAACACCGACCTCACCGACGTTACCGTCTCCAAGTTCAAGAAACTCATCTCCCTCCTCAACCGAACCGGCCACGCCCGCTTCAGACGTGCTCCGCTTCAGGTTAACCCCCCTGAACCGGTTCAAACCCCCGAGCCTGTTCAAACCCCCGCACCGGCTCACAATCCTCCCTCTGCACCGCTCCATCTTCCTCCCCCGCAAACCGCCAACCTCTCTCTGCCGGCGCTCTTCGCGTCGCCGGCGCCGGTTCACCATGCCTCGGGGAGCGTCACGCTCGACTTCACCAAGCCGCACAACGCGCTCCGGAACTCCAAGGCGAAGTCCGTGGAACTCGAGTTCTCCAAGGAGACCTTCAGCGTCTCCTCCAACTCCTCCTTCTTGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGATCTTTCTCGCCCCGCCGCCTCCGCCTCCCGCGACCTCCGCCGGGAAACCGCCGGCGTTCAAGAAACGCTGCCTCGAACACCGCGAACACTCCGACGACGTCTCCGGATCCGGCAAGTGCCACTGCGTCAAGCGAAGGAAAAATAGGGTGAAGAAGACCGTGAGAGTGCCGGCGATAAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGCTCACCGTACCCTCGGGGGTATTACAAGTGCAGCACGGTGAGAGGGTGTCCCGCAAGGAAACACGTGGAGCGTGCACCAGACGATCCGGCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGCGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGAGTGGTGGGTTTGGTGTTCGAGTCAACGTAG


Promoter Sequence:
>Vu_01944::LG1:23543522-23545522(-)
CATAAATTTATGTTTATTCTTAGTTGTTTAAACACACGGTTAAAATCAAACAAAACGTTTGTGCAACTCAGATCTAACAATTCTCTTAATAATATTATATTTATAAGTATAATATATTTTTTAAAAAAGTTATCTTATCACATCCGTTAAATAAAATTTATTGAAGTACGAGAAATCTCTGAAACGTATAGTCATAAACGCGTAAAATATTTAATATAGAAAGAAAAACTCATATAACGACAAAATAATAAATTAATAATCTTTATAAAAAAGTTAAGTATTTAAGACTATTTTTAAATTTATAAATTTGATGTGTTCATAGAATTTGAAAATACACGTAACTACACTAGTTTTAATGTTTAATAAATGTATTTGGAAATCTCAATAAAAAATAATATAATAAAAATTCATTAGTAGTGTTAGATATAATGAAAAACTATGTATAAGATTAATATTGGTTGTATTTAATATACACGTTTATAATGAAAAAAATATGAAATAAACTTAAAATACAAATAAAAAATAATAATAAATTAATTAAAGATAAAATTAAAGATAATATATTTATCTTTCCTTCTTAAACTAGTGCATACAAAGCGTATGTACTACACTTGTTTCTAAGATAATTCATAAAGACCTAGTGAAAATATCTACATTTACACCGAGTGATCTCAAATTGTTAATGATTTGTCAAAACGACATAAAAAATGAAATACCAATCCATAAGACTAACCATGTAGGAGGTTGTTTCATAACAATCTCTTTTTACAAATTACAGTTAAAATATACATAATTGATATCTAATGAATAAAGATTTTAAGAAGTCATCATATTTATAAATAACTTAATAAAAATCATAAGAAAAATATATATAAACAAATCAAATGTAAAGATTTTAAGAAGTGATCATATTTATAAATAACTTAATAAAAATCATAAGAAAAATATATATATAGACAAATCAAATGCAACCGTGACAAAAGAAAATCAGAAGAGACAATAACAAATAATTGATGAATAGAGAAACTTAACAAATAAAAAACTTAAACTTATATTTATATATTACTTTTTTAAACATTAAAATAATTTATTTACAAGTCTATTATATAATATGGGTGAAAACACAAACATATGAGCTGTACCATTAATTTAGTGATAAAAATTGCAAGAAATAAAAGTTGGCAAGTAGAGTAAAAGAGATTGTAGATTTAAATTTTCCACTAACATTTTGAAGTTAAAATTTTTTTAATGAAATTAGATTGGAGACGAGAGAAATAGGCACATTGTGTTTTTTTTTTTATGATGATAAAAAATAATAAAATTATTACTATTATAATTATGAAATTAATTATGAGTAACTTTTAAACTTTTATTTATTTTATAGGTAATTTTATAATTAAAAAATATTTAAATTATAAAAAAATAAATTTAAAGAACCAATAAAATTGATAAAATAATTATTTTAGTTTTAGAAACTTTTATTTAAATGATAAATTTAAAAAATAAATATGTACACTAACAAAAAATCTTTTTATTTATAAATATAAATATCTTATAATTAAATTTGTAAATTTTGTATGTCCATACTTGAACATCTTCTATACCATTTAAATGACCCAAATACTTATTAAACAAATCACTGACACATCTAAATAGTTCTGAGATATGTAATAAATATGTTGAATTTAAGTGGTATTTACTTGAGAAAAAGAAATTAATGAACATAAAACTATTTTGATTTCCTATAACACTTGTTTTAAAATAAAATAAAATATAGAAAAAACTATTAACTGACATACACAAAAAGAGAAAAATCATAATTAAATCATAAAGTTTAACATAAAATCATGTTTACAACTCATCTGGTATTAAAAAAGTATTAATTATATTCAGTTCAAACCAAAGACATTTTCTAACTCTGGTCTGTCTTACCAAGTCCCCCACTCCTTCCATTCTTTTCCATGTATATATATATATATCCTCTCTCCCTATTTCCTTCC


Gene Sequence:
>Vu_01944(-)
ACCCTTCCAATTCCATTCACTCCCATCTCTTTTTAATCCCATGGCACTGTGATTTTACTCCTCAATTTCCCTTATCCCAATTCTCTTCTCCATCAAATGGCTGTGGAACTCATGGGGTTCCCCAAAATCGATGATCAAAAGGCCATCCAAGAGGCTGCATCGGAAGGCCTCAAGGGCATGGAACACCTGATCCGAATCCTCTCCCACCAACCCTCTCACTTGAACACCGACCTCACCGACGTTACCGTCTCCAAGTTCAAGAAACTCATCTCCCTCCTCAACCGAACCGGCCACGCCCGCTTCAGACGTGCTCCGCTTCAGGTTAACCCCCCTGAACCGGTTCAAACCCCCGAGCCTGTTCAAACCCCCGCACCGGCTCACAATCCTCCCTCTGCACCGCTCCATCTTCCTCCCCCGCAAACCGCCAACCTCTCTCTGCCGGCGCTCTTCGCGTCGCCGGCGCCGGTTCACCATGCCTCGGGGAGCGTCACGCTCGACTTCACCAAGCCGCACAACGCGCTCCGGAACTCCAAGGCGAAGTCCGTGGAACTCGAGTTCTCCAAGGAGACCTTCAGCGTCTCCTCCAACTCCTCCTTCTTGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGATCTTTCTCGCCCCGCCGCCTCCGCCTCCCGCGACCTCCGCCGGGAAACCGCCGGCGTTCAAGAAACGCTGCCTCGAACACCGCGAACACTCCGACGACGTCTCCGGATCCGGCAAGTGCCACTGCGTCAAGCGAAGGTACACCGCGTTTCACCCGATCGTAACCCCTCTGAATTGTTGACTAGCACTGTTATATTAAATAAATAATCTAATTTTTTTATGGCATAAAATTTAATTCGGAAAATAGGAGTATTCATTAATACACTAAAAGATGCGTGTCATAACTATTCAAAGTTTTTGACTAATCCGTAGAAAATGAAATCTCTTTTATTCTTATAAGTTTAATTTGTTTCACGAGAAACCAAATTTACCGAGTTTAATTTGATGTGGTAAATAAATTTATTAATTTTTATGATGTTTTTTAATTTTAATCAAGTTATAATAGAACGAAGATAATTTAATTAAAATTTAGATAAAATGGTTAGGGTAAGAAATTATGAATTTTAATCTGGTATTATATTTAATTTGAAGTAGTAAATCTGAAATGTAAAATGATATTAGTAATTAATTAAGGAAGATAATGTTTTAAAGAATGAGATTAGGGAGTAATGGTTTTGGGGTGTAAAGGGGGCGTTGAAGTGTTTTCGTGAAGTAATCACGTGAGTGGGGTAAGGCAGCGTTTGGGAGTCAACGATTTGGGTAGTGGTGCAGTTAAATGCATTAATAGGTATACCACGCGTGATAGTGACACGACAACATAGGGTTCCTGTGCTGTGCCTGTGTCTGGTGTCTCCATTGTCCAGAAGCCAGTTTTTAGAAATTCCTGTCTCACAAACAACTCAGACAATTTCAACCTTCCCAAACTGAACCTTCTTTCAATCCCTTGTCGTTTTTCTCCTTCCCTCCTGTTAATCGCTTTTGACTCTTGACCTTCCTTTTATTTATGCTACTTTTTCTTTTATATATACTACTTTAAAAAATTCAACAAAAACATTTTTTTATATTGAAAAATAAAATAATACAATGCCGTTAAACTCTTATTTTTATATTATTATAGTTTATTTATGAATCATTTATAACCCGTGAGTTTCTTTGTGTATTTATTCTTTTAAGAAATTACTCTTTTACTAAAATAAGTTGTTTTACGTTTTCTAATTTGTTTATTTTAAACATAAATAATTTATCATTTTTTGTTGTAACCGCTTCCTTGAAATTTACTTATTCTTAAATATTTATTTGCTGTAATAGTTACTATACAGATCATATTAAGAAGAGTTTCGAATTGAAAGTCAATATAGGTTTTTTATTTTATGTGTACAGAATAAAATGTAATTAATTAATTTTGTGTTCAGGAAAAATAGGGTGAAGAAGACCGTGAGAGTGCCGGCGATAAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGTCAGAAACCGATCAAGGGCTCACCGTACCCTCGGTGAGAGATGTTGTAAATTTTGTTGACTTTCATCTGAAAGACTCGTTCTCTGACGTTGATTTTTTTGTGATCAGGGGGTATTACAAGTGCAGCACGGTGAGAGGGTGTCCCGCAAGGAAACACGTGGAGCGTGCACCAGACGATCCGGCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGCGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGAGTGGTGGGTTTGGTGTTCGAGTCAACGTAGAAAGTGGAATAAATGAAAAAAACATTAAAAAAATTGGGAAGTGGAGGACTTTTTTTTAAGTACTATAATTTTTGGAAAGTGTAGTTGGAACCATGGTTGCTTTGTAAATTTCTTTTATTTATTTTTATTATTATTATTATTATTATTAGTAATATTATAATATTTAGTTTCATAGATAGGTGAAAATTGGAATCTCAAAGTAATTTATTTCTATCCTTTTGC