Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02076 LG1 25461457 25462691 PREDICTED: NAC domain-containing protein 2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of abscisic acid-activated signaling pathway, cellular response to hypoxia, regulation of transcription, DNA-templated, negative regulation of abscisic acid-activated signaling pathway, negative regulation of abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, response to wounding, negative regulation of abscisic acid-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to hypoxia, cellular response to hypoxia, cellular response to hypoxia, negative regulation of abscisic acid-activated signaling pathway
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/A 25461486 synonymous_variant p.Pro10Pro
C/T 25461603 synonymous_variant p.Tyr49Tyr
C/T 25461644 missense_variant&splice_region_variant p.Thr63Ile
G/T 25461659 intron_variant
T/C 25461869 intron_variant
G/A 25462098 intron_variant
T/A 25462210 intron_variant
A/T 25462390 missense_variant p.Glu88Val
C/A 25462420 missense_variant p.Ala98Glu
A/G 25462421 synonymous_variant p.Ala98Ala
T/G 25462443 missense_variant p.Leu106Val
G/A 25462478 synonymous_variant p.Ser117Ser
A/G 25462525 missense_variant p.Gln133Arg
C/A 25462532 synonymous_variant p.Val135Val
C/A 25462543 missense_variant p.Pro139Gln
C/T 25462566 missense_variant p.Pro147Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02076.1
MMAAPQLHFPPGFRFHPTDEELVVHYLCRKCLNQQSGVPIITEIDLYKYDPWDLPGNFQIKITLDDWVLCRIYNKKRAVEKQPPVKIECSELADEKPAIARPYSELTVADCVNFEGSDSVPRLLTMDSSCSEQVVSPEPASEVQSEPKRSNTKFEYNYVDANLASQFHSANQMSPLQDIFMYLSKPF*


CDS Sequence:
>Vu_02076.1
ATGATGGCCGCACCGCAACTTCACTTTCCCCCAGGATTCAGATTCCACCCTACAGACGAAGAACTCGTCGTTCATTACCTCTGCCGCAAATGCCTCAACCAACAAAGCGGCGTTCCCATAATCACCGAAATCGACCTCTACAAATACGACCCTTGGGACCTCCCTGGTAATTTCCAAATTAAAATTACTCTGGATGACTGGGTACTGTGTCGCATATACAACAAGAAAAGGGCGGTTGAGAAGCAACCGCCGGTCAAAATTGAGTGTTCCGAACTGGCGGACGAGAAGCCGGCAATTGCGCGGCCGTACTCGGAGTTGACGGTGGCGGACTGCGTGAACTTCGAGGGATCGGACTCGGTTCCACGGCTGCTGACGATGGACTCGAGCTGCTCGGAGCAGGTGGTCTCGCCGGAGCCGGCGAGCGAGGTGCAGAGCGAGCCGAAGAGGAGCAACACCAAGTTTGAGTACAATTACGTGGACGCGAATCTGGCCTCGCAGTTCCACAGCGCGAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCAAAGCCATTTTGA


Promoter Sequence:
>Vu_02076::LG1:25459457-25461457(+)
CTCGGTTTAGGAGAAATCGAAGCCTATCAGAATGCGGTGACATTTTTGTAATTCTGTCAAACTTATATGTCTTGGTTCAAAGGGAACCGAGGCATATAAGTTGTATTACCTCAGTTGGAATTTTAACTGATGTCTAATACCCTGAAAAATTCAACCACCCCCTGTAGAATTGACTTCCCACGCCTGACAGCATTTCAGATCCTGCCTACTGCCTTGGTTCTATGGCGAACCGAGGCGTATAAGTTGAATGTAATTTCAAAAATGTCATTTTATATTTTTCTTTTATTTATTTCTGAGGTGTATAGGCATCGGTTGCTTTGTTAACCGAGACATATAGGCATTTATTGCCTCGGGTAAGTGAAGAACCGAGGTAGTATAGCTTTTTATACTTCAGAACGCGTTAAAAATTTTAACCTACTGTTTAATCTTCTTCTTCCTCCCCAAGAGCTCTTCTTCCTCGCGCACCCGAGAAGTCTTCTTCTTCCTCGTGCAAGCCTCCATTGCTCTGGCGCCATCCTCGTTGCTCGCTTTCTTCACGCTTTGGTGCCTCCGGTTCTCTCGCCGCTACTCCAAAGTGTCTTGTTGGACTTGGCTGGGTTTCGCGAGATCGGAAGGAAACTCTTTTCTCATGGCATGACGAGGACGCGACGGCGTGGTGGCGGTTAGGCGCTGGATCTCGCGATTTAGGGCTTGATTTTTAGTTTGGTGATTTTTGTTTGTAGGTCGCGAATGGAGTTTCTGTGAAGACGAAGCTTTCAAGGCGCTGTCTCGCAATTTCCATGGTGGCACGATGGCTTCACGTGATGAAGTTGAGTTCTTGCGGTGGTTGTTGCAATTAGTTTCGCGTATGGAGGAGATCGTGACGAGCTTGCGTGCTTGGAGGTTCGAAGATGATTTGGTGGAGGCGTGGAGAAGGAAGAAAACGCGGCTAGGGTTTCTGGAAAAATGGATATCCGATTTGGATCTAAAAAAATTAAAAACACTCTACTGCCTCAGTTGTCTGTGAACCGAGGCAGAATCCGAAACCTTTTGCCTCGGTTCTGAACCGAGGCAAAAAGTCTACTCCTTTTTACCTCGTCTGTGTATGTCTCGATTGCGGAACCGATACCTATAAACGAAAATAACCGTTGTCGTTTCTCTTAGTGATGTAATTATTAAAGTCAAGGATGTATGTGGCCAAAGTTTCATATACTTACGATTCATGAAAATTTATATATACCTAACAAATTTTATAATTGGCTGGTAAGAGACATACTTTTAACTGAGATAAGAAAACATCATGTTATCAATATTTGTAACTAGTTAATCCTAGATGAACTTTGCATTCACATTTTCATGCTTGTCTCTCTTTCCATTGTTATTTGGATGCTAGTGTATGATTTTCAAAGCGGCGCTATCTCGATGACAAAAAATCATGCCTCCTCAAAATTCCATTTTGTTTGATAAATCTACGTTTTCAAATTGAATACCCCTACTGATATACATATCTCTCACGAAAGGCAAATGTTTAATTCTTCCTCACTGAGAAAATTCCGACCAACAAAAGAACAATATTTCTCTGCTCTAAACTTCTATCTCCATCAACTTTCTTAAAAATATGTAAATCTTCTACAAGATATTCGTTCAGATCAAAATTCCACTGCTACTCATTTCTTCACTGTGAGCATTATCAATAATATTATTTATGATAGAGAAAAAACATACCGTGAGTGCGCAGAGAGGATGCGAATCTCTGTGAAAAACAAAGGGGTAGGTCCGAACCGACAACAGACACGACGCTCCACTCCAAACCAATGTCGTCAGCAGTGACTAAACCTCTTCCTGTGACTTCTTGACACGCACGCACCACACTTCCACATTCGACACGTGTCCTTCTTCTTCACCATCCCAAGCCTAAACCCTACCCTTTTCTCACCCTATAAATTCCCCTCTCTCCCTCACGCTCCAACTTTCAAAAGCCGCCACCGCATAATTTTGCCATTATTCTATCTCACCAACAA


Gene Sequence:
>Vu_02076(+)
ATGATGGCCGCACCGCAACTTCACTTTCCCCCAGGATTCAGATTCCACCCTACAGACGAAGAACTCGTCGTTCATTACCTCTGCCGCAAATGCCTCAACCAACAAAGCGGCGTTCCCATAATCACCGAAATCGACCTCTACAAATACGACCCTTGGGACCTCCCTGGTAATTTCCAAATTAAAATTACTGTTTTTAAATATTGTATTGCTTTGTTATTTTATTATTTTATCTGTGAAATGTATAAATATTCTTTTCTACAGGAATGGCGTTGTACGGAGAGAAAGAGTGGTATTTCTTCTCGCCGAGGAACCGGAAGTACCCGAATGGTTCGCGGCCGAACCGGTCCGCGGGAACCGGGTACTGGAAAGCAACCGGAGCAGATAAACCGATTGGTAAACCGAAACCGGTTGGTATAAAAAAAGCATTGGTGTTTTACGCTGGAAAAGCGCCCAAGGGAGAGAAGACAAACTGGATCATGCACGAGTATCGTCTTGCCGAGGTGGACCGTTCCATTCGCAGAAAAAACAGCTTGAGGGTGGGTGTATTATATATACTAATATACCCTTTTTCTCTCTTCAAAAAGGGTATAATAGACCTTTCCAAGAAAAGAAAAACTTTGTTTTGCCCTTTATTAAATGCTGCTGGTTCATTGGTTCACATATCAAGAAGTTTCGGATTACTATAACTTGATAACTTGATAAAGAGGAAGCACAGGAAAAATAAAATAAAATGTGGCGGACCAATTATTAGTTTCTACTTAAGGAAATGATTCGTTCTTATCTCGATAAAGTTAGGTATATTGAAAATTAATAAATAAATAAATTGATGAAAATGTGTGCACCTGATTGTAATTTTGCAGCTGGATGACTGGGTACTGTGTCGCATATACAACAAGAAAAGGGCGGTTGAGAAGCAACCGCCGGTCAAAATTGAGTGTTCCGAACTGGCGGACGAGAAGCCGGCAATTGCGCGGCCGTACTCGGAGTTGACGGTGGCGGACTGCGTGAACTTCGAGGGATCGGACTCGGTTCCACGGCTGCTGACGATGGACTCGAGCTGCTCGGAGCAGGTGGTCTCGCCGGAGCCGGCGAGCGAGGTGCAGAGCGAGCCGAAGAGGAGCAACACCAAGTTTGAGTACAATTACGTGGACGCGAATCTGGCCTCGCAGTTCCACAGCGCGAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCAAAGCCATTTTGA