Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02199 LG1 27802275 27804088 PREDICTED: transcription factor SPEECHLESS-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of stomatal complex development, response to low humidity, regulation of stomatal complex development, regulation of stomatal complex development, stomatal complex development, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, guard cell differentiation, positive regulation of transcription, DNA-templated, response to low humidity, response to osmotic stress, guard cell differentiation, regulation of transcription, DNA-templated, stomatal complex development, stomatal complex development, regulation of stomatal complex development, guard cell differentiation, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, stomatal complex development, regulation of response to osmotic stress, guard cell differentiation, regulation of response to osmotic stress, regulation of stomatal complex development, positive regulation of transcription, DNA-templated, response to osmotic stress, regulation of stomatal complex development
Cellular Component   is active in   nucleus
Cellular Component   located in   cytoplasm, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription activator activity, protein binding, DNA-binding transcription factor activity, protein dimerization activity, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
A/G 27802295 synonymous_variant p.Pro7Pro
G/A 27802309 missense_variant p.Ser12Asn
G/A 27802449 missense_variant p.Glu59Lys
T/C 27802453 missense_variant p.Phe60Ser
C/T 27802798 downstream_gene_variant
T/C 27802822 downstream_gene_variant
G/T 27802843 downstream_gene_variant
T/A 27802865 downstream_gene_variant
T/G 27802881 downstream_gene_variant
G/A 27802930 downstream_gene_variant
G/A 27803009 downstream_gene_variant
T/C 27803017 downstream_gene_variant
A/T 27803024 downstream_gene_variant
T/A 27803087 downstream_gene_variant
G/A 27803101 downstream_gene_variant
A/G 27803121 downstream_gene_variant
A/C 27803141 downstream_gene_variant
T/A 27803172 downstream_gene_variant
T/C 27803217 downstream_gene_variant
A/G 27803220 downstream_gene_variant
T/A 27803269 downstream_gene_variant
A/C 27803290 downstream_gene_variant
T/A 27803296 downstream_gene_variant
A/G 27803303 downstream_gene_variant
G/T 27803327 downstream_gene_variant
A/T 27803365 downstream_gene_variant
G/A 27803366 downstream_gene_variant
A/C 27803380 downstream_gene_variant
C/A 27803533 synonymous_variant p.Ala152Ala
A/G 27803585 missense_variant p.Ser170Gly
A/T 27803665 synonymous_variant p.Pro196Pro
C/A 27803869 synonymous_variant p.Leu264Leu
A/G 27803919 missense_variant p.Asn281Ser
T/C 27804031 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02199.1
MEPQKTPSIDDSLFDIFKDTEFGDLLSILESLQDSKDFAPINDSAVIINPTSKENEQIEFRKVSISSSVPQDSETELESKTKKLSPTLAEEPQKVSHITVERNRRKQMNYNLSVLRSLLPSFYAKRGDQASIIEGVVDYINELQQLLQCLEAKKQRKVYSDVLSPRLLSSTRPSPLSPRKPPLSPRINLPISPRTPQPGSPYKPSYLSPTIPNSPTSSASSSINDNIKELVANSKSVIADVEVKFSGPHLLLKTVSPPIPGQALRIISALEDLALEILHVNINIADETMLNSFTIKLASTSSN*


CDS Sequence:
>Vu_02199.1
ATGGAACCCCAGAAAACTCCATCAATAGATGACAGCTTATTTGATATTTTCAAAGATACGGAGTTTGGGGACCTCCTTTCCATCTTGGAGAGCCTACAGGACTCGAAAGATTTTGCCCCCATCAACGATAGTGCTGTTATTATCAACCCAACTTCGAAAGAAAACGAGCAAATCGAGTTCCGAAAGGTCTCAATATCTTCAAGTGTTCCACAAGATTCTGAAACGGAGCTTGAAAGCAAGACAAAAAAGCTTAGCCCCACCTTGGCAGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAGCAAATGAATTACAACTTGTCCGTATTGAGGTCACTTTTGCCTTCCTTCTATGCCAAACGGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAACGAGTTGCAACAGCTGCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTACTTTCAAGCACAAGGCCTTCACCACTAAGCCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTACCCATTAGTCCAAGGACTCCACAGCCTGGCAGCCCTTACAAACCAAGTTACCTTTCTCCAACTATACCCAACTCTCCTACTTCTTCGGCTTCTTCTTCAATCAACGATAACATCAAAGAGCTTGTTGCCAATTCCAAGTCTGTTATCGCCGATGTTGAGGTCAAGTTTTCAGGTCCACATCTTCTTCTCAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTCAGAATAATATCAGCCCTTGAAGACCTAGCACTTGAAATCCTCCATGTCAACATCAACATTGCTGATGAAACCATGCTCAACTCTTTCACTATTAAGCTAGCAAGCACTAGCTCAAATTGA


Promoter Sequence:
>Vu_02199::LG1:27800275-27802275(+)
TCACCTCAAGAATAAAAAATCAAGCAGGTAAATAAGTCATATCAAGCATTAAGCATAATCAAACACTAACTCAAATTGAATAAACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAACAACACAATTTTACGCAAGGTAGAGAACAAATTGAAATAACTCTCCATGGTGGAAACAAATTGAAGAGATACATAAGAAATTGAAACCATAAAAAAGATGAAGCGGTCCTTTCCAAAGGGACCTAGAAGTTACGCCAAGCTTCAATCACGCCTCTCCTTCGCACTTCCACCTCCAATGTGCAACCTATCTTCCTCTTCAACCCCAAAAGGGAAACATAACCATGGATAAAGGATGAAACCCAAGGAGGAGAGAGGGAGCTTTCCAACATCCCAAACAACCTCTAAAAGTCTCTCCCAAGCATCCTAGGTGAATCTATTTATGTAAAAAATGAGGAATGTCCAAAATCCTCGCGAAAACATGATTAAATACTCATTTGTGTGCATCAAGACAAACTTACCCAGCGACTTCATTCTCGACTAGCGAGGCTTAAAAGTTGAGGCTCTCTGACTTGTAACTTGTTGAGCAAGCCATATTTTCGCCTAACGACTCGAATACTACAAGTTTGTACTATATTTTCACCTAGTGAGAAGCTAACTTGCCCAACAACTCAGTCTGGTGTACAATGGTAGTTTTTTGGTCGTCCAAGAGTAGTCCATGGTAGTGTAACCCTATAGGTGAGTCATTTCTTCAAGTTTGCTATGTTGAGTGCAATTCTAGTGATCTTGACACATGGATGTTTGTCTAAAAATTCTTTCTTGTTTAATTATGTTTCCTTGAGTTCTAGCTTGTTTTCCTCCATTTTTCCATTGACTTATTTCAGATACTTAAAATAAAGTAACAAATATAAAATACTAAAATACAAAGAGCAAGATAAATTTGAAGATTAAACAAAATAAAAATTATGAAAAAGTTGGTTTTTATTCACAAAATTTAACACTAATAAAAAATAGAAAATAATGTTAAGTTTTCTTAATGTTAATAGGATTAGCTTAGCCATTCCTATTATAACACTAACTATTTATTTTATTTTTTTATATTTATTTGAATTAGCATTGATTAAGTCGATGAATTAACTTTAACTGCTAAGTGAAAGATATTGTGATCCTAACTATTTTTGTTTAATATTTACATTTACTTTTGTTATAATTGGCTAAACCGACATTAATTTATATGTTATGAATTCATACACATTTGTTACAAAGAATAAAAATAATAAATTATTTTTAATTTAAAGATATTGATTTAAATATGATAATTCTTTTCACTCATAGTTGTTCTCTCTCACTTTTTATGTAAATATAATCACACTCATTTTCTCTACACATAAATATCCACATGTTCATCTCTTCACCATAATTTTCCCCTTCACTCATCATGTCCTTCACTCACATTATTTTCCTCACATGTTTGATTCATTCTTTTCTCTTTTGTCTACATTCACACTTATCTGTTCTATTTTCTTCAAATGCAAAAGATCGATTTGAATTTATTTTTCTATCATTATACTAGCTAGCACTGTATGAAATCCTTAAATTTTTCCAATGTACTCGATATCGATCTCTTTTATCCTAACGTCTCTGAATATTAATTGTAATTTTAAGATTTGGTCTGGTACTGCTTTTCTGCTCTGCCTGCTGCCATAAGATTCAGTGCACCACAACACTGCCTTGAGATCCTATCTCTCACCGTTTACAAAACCACATATTCATTCAGTAGTACTGCTACAGTAGTAGTTGACACCTTCATCGTGAGAGTTTAGTCTCTTTCACATCACCACCAGGTACCTCTCTTTTTTCCATAACTCCTTTCCACCTTTTTCTTAATCAAAAACTTCAGAAATTTCTCTTCCCCCACTCATTCCGTTTTCTGATATTTTATAATCCTTTTGGAGTTAGGAGAAA


Gene Sequence:
>Vu_02199(+)
ATGGAACCCCAGAAAACTCCATCAATAGATGACAGCTTATTTGATATTTTCAAAGATACGGAGTTTGGGGACCTCCTTTCCATCTTGGAGAGCCTACAGGACTCGAAAGATTTTGCCCCCATCAACGATAGTGCTGTTATTATCAACCCAACTTCGAAAGAAAACGAGCAAATCGAGTTCCGAAAGGTCTCAATATCTTCAAGTGTTCCACAAGATTCTGAAACGGAGCTTGAAAGCAAGACAAAAAAGCTTAGCCCCACCTTGGCAGAGGAACCACAGAAGGTGTCTCATATAACAGTGGAGCGCAACCGAAGAAAGCAAATGAATTACAACTTGTCCGTATTGAGGTCACTTTTGCCTTCCTTCTATGCCAAACGGGTAATTAAGTCTTCGTTATCGCTTACTTAATTAAACATCACTCCCATATATATTCAAATTCTAGAAACTTTCCTTGATTTTACATTTATTACATTAATTTAGTTCAAGAAGAGTTTGCATTCCTGACTTTGTTTTACTCTCCAAACGTCCTTGACATTGACAACTTTAATTAACTTAACTACCTATGAATGTTTCACGATTTTGTATTATGCTATGTTGAAATCTTTTTCTTATTCTTGTATTCTTTTTAATACAGTTTTTCTTGTAAGCAACCATCGTCTACAAAAAGATTACTCAAGTGTTGCAAAATGATTTGTTTTATCAGCTAGTAGCATATCGAAGAGCGATATTGAAAGGAAAAATATACTTCAAACTAATATATCTACTCTACATCTTTTTTATTCAATACAATATTATATAATTGTAATAAAATGTTAATTAATATAATGTTAATGTTTATATAGTTTTAAATTGAGTGCAGAAAAAGTATAACAATCATTCAATAGGGACACCCAAAGGTAAGATGACACCGAGAGAGAGAGAGAGTAGCGTAAGTACGAAGGATAAAGAAAAGTGGGTCGTTATCCTTTGATGTACACCTTTTTACATACATACTTTTTTATAAAAAAATCAAAATAATAAATAATAATAAGTGTAAACAAAATATAATAAAAGGGAGTTGCAGTTTGAGTGTAAGGGAAAGAAAAGTCACAGAAGAAAATGTTCTACTTGGCTTGTGTATGTTGTGATTTCATGCAGTGGTACTTGGGGCTGATTTGTTGTTTTGTTCATATATGAGAAAGGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAACGAGTTGCAACAGCTGCTACAGTGCCTAGAGGCCAAGAAACAAAGAAAAGTTTACAGTGATGTACTAAGCCCTAGGCTACTTTCAAGCACAAGGCCTTCACCACTAAGCCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTACCCATTAGTCCAAGGACTCCACAGCCTGGCAGCCCTTACAAACCAAGTTACCTTTCTCCAACTATACCCAACTCTCCTACTTCTTCGGCTTCTTCTTCAATCAACGATAACATCAAAGAGCTTGTTGCCAATTCCAAGTCTGTTATCGCCGATGTTGAGGTCAAGTTTTCAGGTCCACATCTTCTTCTCAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTCAGAATAATATCAGCCCTTGAAGACCTAGCACTTGAAATCCTCCATGTCAACATCAACATTGCTGATGAAACCATGCTCAACTCTTTCACTATTAAGGTACTGTCATGGTGTCAAACCACTGTTTTATTGATATCTTAAGTTAATATTAACAAGAAATTGTATGGTTTAGGGTCTATTGCTATCTTTGAATGACAGCTAGCAAGCACTAGCTCAAATTGA