Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02239 LG1 28434858 28440463 PREDICTED: uncharacterized protein LOC108336182
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   DNA demethylation, DNA demethylation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, DNA demethylation, regulation of transcription, DNA-templated, DNA demethylation, regulation of transcription, DNA-templated
Cellular Component   is active in   histone acetyltransferase complex, histone acetyltransferase complex
Cellular Component   located in   nucleus, nucleus, nucleus, plasmodesma
Molecular Function   enables   protein binding, protein binding, DNA binding, protein binding, protein binding, DNA binding, protein binding, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/C 28434891 3_prime_UTR_variant
A/G 28434924 3_prime_UTR_variant
C/T 28434944 3_prime_UTR_variant
G/A 28435006 3_prime_UTR_variant
T/C 28435321 missense_variant p.Lys223Glu
C/T 28435414 missense_variant p.Glu192Lys
A/G 28435490 synonymous_variant p.Arg166Arg
T/A 28435570 intron_variant
G/T 28435760 intron_variant
G/C 28435882 intron_variant
A/G 28435883 intron_variant
G/A 28436024 intron_variant
G/A 28436029 intron_variant
G/T 28436154 intron_variant
C/A 28436257 intron_variant
A/T 28437507 intron_variant
A/C 28437590 intron_variant
C/G 28437630 intron_variant
A/T 28437640 intron_variant
T/A 28437641 intron_variant
T/A 28437693 intron_variant
A/T 28437696 intron_variant
A/T 28437775 intron_variant
A/G 28437895 intron_variant
G/A 28438582 intron_variant
A/G 28438646 intron_variant
A/T 28438680 intron_variant
T/C 28438740 intron_variant
C/T 28438741 intron_variant
T/A 28438748 intron_variant
G/A 28439193 intron_variant
T/C 28439221 intron_variant
G/C,* 28439264 intron_variant
T/A 28439401 intron_variant
T/C 28439416 intron_variant
G/A 28439833 intron_variant
G/C 28439877 splice_region_variant&intron_variant
C/A 28439912 stop_gained p.Glu144*
C/T 28439918 missense_variant p.Gly142Arg
T/C 28439922 synonymous_variant p.Glu140Glu
G/C 28439982 synonymous_variant p.Val120Val
G/A 28440016 missense_variant p.Pro109Leu
C/T 28440021 synonymous_variant p.Lys107Lys
C/G 28440025 missense_variant p.Gly106Ala
T/A 28440385 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02239.1
MGTNRGQKETKIYDDDDDSGSAGAFRCTRSQAAPDWSVIESLILVNEVAAVEADCSVALSSYQQWNIIAQNCMALDVQRNLAQCRRKWHALLSDYDRFKGTATAGGKLPTNFDYELFEAVERVVRAREERGMADPESDTEAGNEARDETVEIGSKRKGQRSKFRHRIQKPKLEQRHEDSHEEEHEDDHSEDEYLKDYLESRPKLKCTTERPPKHSGISPKSLKVELHENHTERPKPITVEKIAISREENQETLTLKLQDLAVEIEAIATKSATDYKGGDSKNVEDSCTDFTRRQGDKLITSLGDFSNTLKQLCDILQECK*


CDS Sequence:
>Vu_02239.1
ATGGGAACGAATCGAGGGCAAAAAGAAACGAAGATTTACGACGATGACGACGATTCAGGTTCGGCTGGCGCCTTTCGATGCACGCGCTCCCAAGCGGCTCCGGATTGGAGCGTCATCGAGTCTCTCATTCTGGTGAACGAAGTCGCTGCGGTGGAAGCCGACTGTTCCGTCGCGCTCTCCTCCTATCAGCAGTGGAACATCATCGCCCAGAACTGCATGGCCTTGGACGTGCAGCGCAACCTCGCGCAGTGCCGCCGCAAGTGGCATGCGTTGCTCTCTGACTACGACCGCTTCAAGGGAACCGCCACCGCTGGAGGCAAGTTACCGACGAATTTCGATTACGAATTGTTTGAGGCCGTCGAACGCGTTGTTAGGGCGCGTGAGGAGCGGGGCATGGCTGATCCCGAGAGCGATACCGAAGCAGGGAACGAGGCGCGTGACGAGACCGTGGAAATTGGGTCCAAAAGAAAAGGGCAACGAAGTAAGTTCAGACACCGTATTCAAAAGCCCAAACTGGAACAAAGGCACGAGGACAGCCATGAAGAAGAGCATGAGGATGATCATTCAGAAGACGAATATTTGAAAGACTACCTAGAATCAAGACCTAAGTTGAAATGTACTACAGAAAGGCCTCCAAAGCATTCGGGAATATCACCAAAGAGTCTCAAAGTAGAGCTTCATGAAAACCATACTGAAAGGCCAAAGCCAATCACTGTAGAAAAGATAGCAATTAGCAGAGAAGAAAATCAGGAAACATTGACTCTGAAATTGCAAGACTTGGCAGTGGAGATTGAAGCAATTGCTACTAAATCAGCAACAGACTATAAGGGAGGTGACTCTAAGAATGTAGAGGATTCCTGTACTGACTTTACAAGACGCCAAGGGGACAAACTCATAACAAGCCTTGGAGATTTCTCCAACACCCTCAAGCAACTATGTGATATTCTCCAAGAGTGTAAATGA


Promoter Sequence:
>Vu_02239::LG1:28440463-28442463(-)
ACTTCTTTTCAGTGTTTTTTTATGTATTTCAATTAAAAATTTTGTTGGTGTATACCAATTGATAATGACATTACGAGTGGAAATTAAGGGATTCAAGGGTTTTGAGAATTTAGAAAAGAAAAGAAAAAAAATCAGAAAAAATTAAAAAAATATATAAAAAACTAATATATTAACATGTCTTCGTTACAAATAACCAACTCGAGATTCTCTTTAACATCTTTGAAACAAAATAACTGATGAAATTAAATCCATTTTTTTACATCCAAAAATATAGCTGTAAATTATATTTAAGAGTTCTTACATTTACAATAAAATAGAATAGTTGTAGGAAATAAAATTAACTTATAGTTATCCTAAAATAACCATAAATTTAAAAACTTTTAATAAATAGTTCCGATAGAAAACATATGAACAAATCGAACGGTTATACAACACCCTATATAAACCGAAAGGTTTACAAAAGATATACTAAGTCTGATGATCGAATGGTCCTAACTAGACTGTAGGGTTATCGCCTTTCCAAGCCTGCTCCAACAACCAAGCATCACCTTCTGTTCACATCCACAGGATGATCATTGCAAAAGAAAAGATGACTGAACGGAAAACATAAGACAAGACAGTAAAAGTAGGGTAAGCTAGTGTAATTTAATGAATCATAATAACATAAACAAATACACAATCATATATTCAATCGAGCATTTATAAAATCATCAACATACATTTCAGACAAAGACCGAACATAATATACATGCAATGACCGACCACTTTACTTGACCATCCAGATTGTATGAATATGTAGCTTGGGGTCGTCCTTGCACCCAGGTGGTGTAGTAACTGGAAACCCCTCAACTCCCACCCGAGGTTAGTTTGTCATACCTCGCCCAGATCCCCTCTAGATTAGGACCTCCTGCCATTCTCACATTATGACTTACCCATCTCTACTTGAGAATTGGTAATCATTAGAATTTCAGGATGAACGCTGTGAATTTCATTCTCCATATTCATACTTTACCAATTCAATAACCATACACCGAGACATTCCTCCTTGGAATTCTCTCTCATACCATCTTGAAATATAATACCAACATACTTTTTCATCCATAATATATTGAAGTAAAATTACGCCGAACAGTAAAACAATCACCACCATTAAGTACAATCGAACAGAAAAGCGTAGCATAACCTCTGAACAAGACCAAAAGGAAGACTACTCCCTATATGTGAACATGACCGAATGGTCATGTAAAGAGTAAAACTCAAGCATGAGAATAACGTCTTTGAAACTAAACGCCAGAACAATTTCTTTATTTGATACATCTATCCTCCCTTTCACATGTCATTTTCAGCAGCTGACACATTTAACATAATGAGAATTGAAAAAAAAATATTAAAATCAAAATGAATCAAATCCAAAATAAAGGATCAAAATAGTAATTAAACTATATTATACAATATTAAGGACTATACATTAATTAATAAGATCTCTTATTCTATGTATAACACACCTTTTTTTTCTTTCTTTTCTTTTTAGTGGAGAGAATAATTTTTGCAAAATTCTTTACCAAGAAATTTTTTAGAGTAAAAACTTTTGATTTTGTTTTCTTAAAATTTCTTTTATATGGAGTGCTTTCCATAAATACACCTGTTATCAAATTTATCTAAATTGTAGTGGACAAACATGTTTGACCACAAGTATGATATGGTTTTAGTATAATATGGAAACCAAAATTACATAACAAAAATTGAATTAACTTATAGACTTCGAAAAAAAATATAAAGATCAAAATTACTTAAAAAATTAAAAGAAAAAATTACATATTGAAAAAAGAATTGAATAAAAAATATAATCAAGCCTAATAATATATTCTAACTTCAAATAATTACACTTTCATAAATGCTTATATATTTTTTAATTTATTGCATTTAAAACTGATCTGAAAACATCTCAGTTTGTAATAACTAAATATGGATTTTCACAGCACAATAACATTTCTTAAAAT


Gene Sequence:
>Vu_02239(-)
GAGCCTAGATTAATAATGCGACACGTTTTTAGCAAGAATCTGTGAGAGGGTTTCGGACATGATTAGTGCAAAGCCACAAAGCACCTCCCCCTTCTCGTCGAGCTTCCTTTTCTGGTTTCTACATGGGAACGAATCGAGGGCAAAAAGAAACGAAGATTTACGACGATGACGACGATTCAGGTTCGGCTGGCGCCTTTCGATGCACGCGCTCCCAAGCGGCTCCGGATTGGAGCGTCATCGAGTCTCTCATTCTGGTGAACGAAGTCGCTGCGGTGGAAGCCGACTGTTCCGTCGCGCTCTCCTCCTATCAGCAGTGGAACATCATCGCCCAGAACTGCATGGCCTTGGACGTGCAGCGCAACCTCGCGCAGTGCCGCCGCAAGTGGCATGCGTTGCTCTCTGACTACGACCGCTTCAAGGGAACCGCCACCGCTGGAGGCAAGTTACCGACGAATTTCGATTACGAATTGTTTGAGGCCGTCGAACGCGTTGTTAGGGCGCGTGAGGAGCGGGGCATGGCTGATCCCGAGAGCGATACCGAAGCAGGGAACGAGGCGCGTGACGAGACCGTGGAAATTGGTACGTTCTAATTTTTCTGTGAACTTTGTCGTTGTGTTATTAGAAGAATGACTCGCCTACTATTGTTAACCGGTTATTTTCTTTTCTGAAACTGTATATAATTTAAGAATTGTTAGAAGAGTGTTATGATTTTTCAGATGCTCATCCAATCACTAATTGATATGTATGAAAGGATCATTAATTTTTTAATAATTAGTTTAAAGAAGTCGTATGTACTGTGTGGGGGTGATGTTTAATTGGTTGACCAATAAAAATAGTTATACTTACATATTGTACTCAAGTTTTAGTGAAGTGTATGCACTACCATTAAAAGTTTTTACATGGCCATATAAAAATTATCCTTAAACTAAATTATAAAATTCAACTCATTTTTATATTTCATATACTTTATTATACACAATAATTTGTGATTGGATAACAGTGTAAAAGATCTTTATGTATTGATTATTCATGTTCTTTGAACTTACCATATATGACAGTTTAAGTTTGGTGTGAATATGATTGCTACAAATAATTTGTGATTGGATAACAGTGTAAAAGATCTTTTATGTATTGATTTATTCATGTTCTTTGAACTTACCATATATGACAGTTTAAGTTTGGTGTGAATATGATTGCTACAATCTTTGTTATGGTGATTGGTTGACTAAGTAGTTTGATTCAATGCATTTAAACATGGAGTGTTGAAATACGAAATTTATGCTTTGTATCATGGCTAATAGCAATTGACTGATGGTTCTCGTAGATATGCCTAATTGAGCATGTTCATGTATTTGTGGCCATATGGGTAAGTTCTTTGTGCTGGCATGGAAGGGGGATGTTAGAGGAGGCTTTCGACTAACCAGTCTTACAACTTAATTTGTCTTTATTAATGCATATTTGGTTGGTGGGCTATTTTAAATGCACTCCCGTGCTCTTAAGAAACCTATAATTTCCAGATGGTAGTGTTGTTGACTGGTAATTGTATAAAACTTAATGGAAGCCTATTGTCAATGTTAAATGTTTAGTTTGGTGAAAGTAGGCTTAGGGGCCTTGGTTGATTTAGAGAGCTCATTAATGACTGAAAACTCATTAAGAGATATTGAGGGGATATTTAAGGATAAACTTGTTTTGATCCTAATTTATTTTTTTTCCTTAGTAAAAGATAATGAACAAACCATGGAATTTAATTAGTCAGTTAATACTTAGTGGTAGAACTGTAAGCTGGATGTTTTTTATAGGAACTAGGGGTGGCTAAGTATCCACTCCCCACCTATTGATGAATGTGCACTTCAGATCTAGGGTTGGCCAAGCACCCATCCTCGCCTTTTGAAAAAGAACATGATTGGGTGGATTGGCACTATTCTGAAAATGGATTGAGAAGGCCGATTTTCACTCTGTCCCATCATGACAATAATAAGATGGGGGAAAAAGAATGATTGATGCAGGGTTCGCTGACAGGTTGCACCAACACCTTTAATGGGTCACTGGGTCTCTCAGCAGGAATATTATGATGGAAGATCTTTGCCCTTTCATGGAAGATGCCAGATTGGCCTCAACGGCATGGAGCTTGTTGCATTATTGAACACATTTACATGAAATACTATATCTAGGCTTGGATTGATAGTGGTGACTCAAATTGGGCCATCAATGGAGCTTGTGCATAGTGGTTGTTGAATTAGGCGTTCATCTTAATGAGAAGCTTGGATTTAGAGTTTTAATCCATCATTGGGTAGAGGTTGTCATGCAACCAAAAATTTGGGCCTGGGATGGAATTTGGAATCAACAGAAGGAAATCTGAAAGCATTATGGTCTTTTAGTGTATTGAGCTATCTCTAGGGTGCTGTGTTTGATAGTTGTAATATCGTCTCTTAGTAGGTGGTCAGTCTAATGACTCAATGTTACGTCATTTGGTAAACCATTGGTCTGTTGTATATGTTCAATTATGTCAGGCAGTTGTCTCTGTGTATCACCTTTTTGTTGTTCTATATAAGGGTAACTTGTACTTGTTGCGGTTATACAACAAAGTAACCATTTGTAAAGCTTATTTGGTTGCTAAACGAGATAATTCTTCATCTTTATGTTGTTATGCATGCTCTTTGTTCTGTGTCTCTAGTTGGTTAACCAGTATTGTTTCTTTCATTGTATTCTGGGCTCATTTTGGCACTTGATTCACAAGAGACTGGTATTAGAGCCAACTTTGATCTTGTTTAGTGTTTTTGATAAGTTTTTGTAAGAAGATAAGTATCACATCCAAGAACGAGATGATCAATGGGAAGAACAATTTCTACTGGCGTAGAATTAAGATGTGAATCTTGCTCAAGGAACAAGGGGTGTCTGTGCCACATTTTAAAGCATCTAGCAAAGAGAGGCAAGTTCTGGAGTAGATGGAGAAAATTCTTATTCGATGACACTTTTGTCATTTTGAGATAGGTTCTTTGTGTTGTTGCAAAAGAGAAGATCTTAACAATGTTGTGGCTAAAGTTGAAGAAGCTCTTTATGACATAGTCCATTTGTGACGAACTTTTGTTGAACAAGAAGTTGTTTGGGATCTGTATGACAGAGCATATGCCATTCAACGTCCATCTTGATGATCTCAATTCAATTTTGATGGAGCTCCAAGCCATTAACGTGAAAGTCGAAGACGAGGATGTAACAATGATTCTATTTACCTTTCTCACACTGTTGTACAAGAACTGGGTGGGTTCTGAGTGTAAGGAAGGACTGCATCACGCTTGTAGAGGTTAAGTTTACCCTCTCTTCTAGTGAGCTTCACCTCAAAGCATCTAAGAGTGTAAAAGATGATCATCCTCTACATTAGTGGTCTTCAAGATTGACAAGATGGTTAAAGGGTCGAAGAAGACAAACGTTGATCCTAAAGATGTTTGCAGATGTTGAAAGCAATCGAGACATTGGAGGAGAGATTATATAAGGTTGGGGAAACAAGATTGTGGTTGTATATTTTAGAAGGTGGAGTTGTATGATGATATCAAGTGTTGACTACTATCTCTAAACAAAAGTCTTCTAAGAGGGTGCTGAATTCTTGGTGCTCCTTTCACATGAGACCTCTAGGAGACTTGTTATCCACCTTTGATGTCCTTGAAGTTGCTTCTTTAGAGCACACAGCTCAGCCACCAAATCCTATTTCTCTTACTTGTATGATGTGCCCAATACCTTGGTGAGGTCTCTTGCAAACAACCTTCTTCCAATGATGAACGGTATCATGCTCCTCCTTGCCATCATTATCTCAGCTAAATCAAAACTTTCATTGGGCTCCATAATAGACACCAGATAGTCTTACTAAATGTGGAGAGTTGTAAGAGATGTTGTGGAACAAATCTCTTTCCCGAGTTGTGGCTACTAAGAAATGAGCTTTGGTGGTAAAATTTGAGCACCAAATGGAGGTTCACTTGTAGAAGACTCTCCGATGCTCAAATAAGGAGAAACACAAAATATTTATGAGTGAAGAGAACTAAATGATACTTCCTTTAGCATATGTTTATATTTATAGTCCTTTGGGCCTCCATATATGGGGCTAAGTAAACAGTAAACCTTTCAGTTTCTTAGTTGCTTTCCTTGCTTTACTCAATTGATCAAGTGGTTGATCTATTTTCATTTTGGTTTTGATTCCAACATCTGTGGTAATCAGAGTGTACTTCTGTTTGGGAGTAGGTTGGTACACATTTTATTGGTACAAAATATAGATATTACTTCGTGGATGGCTAATCTCCTTAGAAGTACTTGGTTGCTCCTCTTTAGTAGAGTCTTTCCTTTCAATCACATTTTTTACAACTCAGAAGGTTTATGATATATCCGGTTTAAGAAAATTGAGTTTAGTTTCACTTGGACCAAGTACTTGTTCAATAAGTTTGGAGACATAACATTGAATTTTTCGTTGAATGAAAATACAATAAAAGGAAGAATGGCACACATCTCATACGACACAAGAGTCTTTATATGATATTTGATTTGGTTTTTTTCCATTTTTAACACAAAGGCAGAGCAAGTTGAGAGAAGAAAATTCTGATTCCTACAAGTTGTAATTGAGCATAAATATTTTTATTAATTACGATTGATACATATGGAGAGTTGAGAATATTTTAGCCTTTCATTGGTTGTCTTATGCAGTTTAAATATAAAATGATCATTCTTACTCTTATAGTTAAGTGGTAGTAATTGTCAATATTGGCACCAATTTTTCTTAATTTGTTCTTTTTTTGTGAAAATTAATGTATAGCACGAGGAACTGTTTTGATCAACACCGTAAAATTTCACATGTTTCTTCTTCCTTTTTCCCCACTTTTCTATTTATCCCTTTTGGAGCATTACCTTGTGAGTTTCCAAACTGATGAATTTTTGTGAATTCATTGAATAGGGTCCAAAAGAAAAGGGCAACGAAGTAAGTTCAGACACCGTATTCAAAAGCCCAAACTGGAACAAAGGCACGAGGACAGCCATGAAGAAGAGCATGAGGATGATCATTCAGAAGACGAATATTTGAAAGACTACCTAGAATCAAGACCTAAGTTGAAATGTACTACAGAAAGGCCTCCAAAGCATTCGGGAATATCACCAAAGAGTCTCAAAGTAGAGCTTCATGAAAACCATACTGAAAGGCCAAAGCCAATCACTGTAGAAAAGATAGCAATTAGCAGAGAAGAAAATCAGGAAACATTGACTCTGAAATTGCAAGACTTGGCAGTGGAGATTGAAGCAATTGCTACTAAATCAGCAACAGACTATAAGGGAGGTGACTCTAAGAATGTAGAGGATTCCTGTACTGACTTTACAAGACGCCAAGGGGACAAACTCATAACAAGCCTTGGAGATTTCTCCAACACCCTCAAGCAACTATGTGATATTCTCCAAGAGTGTAAATGAGCATTACAATGTTCTCTACAACACTATTTTCTGCCCTTGTTAGCAAAAAATATTACTTAGGCATAGGAAAGAATGCTGCTGCCTTATGCTAATGTAGTTGTCTTAACTCATTGCTGTTGCGAAAGTAAAATACAGCTTAACAAGACATTTGTGTACTGTTTTAACCT