Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02413 LG1 32988394 32989064 PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, embryo development ending in seed dormancy, stomatal complex development, embryo development ending in seed dormancy, shoot system development, meiotic cell cycle process, embryo sac development, shoot system development, protein phosphorylation, tissue development, meiotic cell cycle process, meiotic cell cycle process, embryo development ending in seed dormancy, embryo development ending in seed dormancy, regulation of cellular component organization, protein phosphorylation, cell division, regulation of cellular component organization, macromolecule modification, protein phosphorylation, stomatal complex development, pollen development
Cellular Component   is active in   plasma membrane
Cellular Component   located in   pollen tube, plasma membrane, plasma membrane
Molecular Function   enables   kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein binding, protein binding, protein serine/threonine kinase activity, kinase activity, protein binding, protein binding
SNP Position Effect Amino acid change
T/A 32988413 stop_gained p.Leu7*
A/T 32988427 missense_variant p.Thr12Ser
T/C 32988444 synonymous_variant p.Phe17Phe
T/A 32988455 missense_variant p.Leu21Gln
G/A 32988456 synonymous_variant p.Leu21Leu
T/C 32988489 synonymous_variant p.His32His
T/A 32988499 missense_variant p.Phe36Ile
T/C 32988526 missense_variant p.Phe45Leu
A/G 32988596 missense_variant p.Tyr68Cys
G/C 32988627 downstream_gene_variant
G/A 32988629 downstream_gene_variant
C/T 32988636 downstream_gene_variant
G/C 32988673 downstream_gene_variant
T/C 32988694 downstream_gene_variant
A/G 32988728 synonymous_variant p.Gln78Gln
G/C 32988739 missense_variant p.Arg82Pro
A/C 32988741 missense_variant p.Asn83His
T/A 32988758 synonymous_variant p.Pro88Pro
A/G 32988843 missense_variant p.Thr117Ala
T/C 32988860 synonymous_variant p.Asn122Asn
T/C 32988866 synonymous_variant p.Ala124Ala
G/A 32988908 synonymous_variant p.Leu138Leu
T/C 32988919 missense_variant p.Phe142Ser
G/T 32988939 missense_variant p.Ala149Ser
T/C 32988970 missense_variant p.Val159Ala
C/T 32988980 synonymous_variant p.Ser162Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02413.1
MGKLRMLAFSFTTITKFLILLLLCACFLSCAHCGSFTEIQALTSFKLNLHDPLGALNDWDPSMSLAPYDWRGVEPLLQLLQRNNSLIPLEMHAPTRLVLQYNDLFGQLLPEIGNLVTLQILNVASNNFSGEIASELPLHLKFVDLFANAFSGQIPTTSVGLSELQLINLSYNKFSGQIPARIGELQNLQ*


CDS Sequence:
>Vu_02413.1
ATGGGGAAACTAAGGATGTTGGCATTTTCCTTCACTACCATTACTAAATTTCTCATTCTACTGTTATTGTGTGCATGCTTCTTATCATGCGCCCATTGTGGCTCTTTCACCGAGATCCAAGCCTTGACGTCGTTCAAGCTCAACCTTCACGACCCTCTCGGTGCGCTTAACGATTGGGACCCATCAATGTCGTTAGCTCCTTACGACTGGCGCGGGGTTGAGCCTTTGCTCCAACTCCTTCAACGAAACAATTCCCTAATCCCTCTCGAAATGCACGCTCCTACGCGCCTTGTTCTACAGTACAACGACCTCTTCGGCCAACTCTTACCGGAAATTGGAAACCTTGTCACTCTACAGATTCTAAATGTTGCTAGCAACAACTTCTCTGGTGAAATAGCCTCCGAACTTCCCCTGCATCTCAAGTTCGTTGACCTCTTCGCCAACGCCTTCTCTGGCCAGATTCCAACCACCAGTGTCGGTCTTTCCGAGCTTCAGCTTATCAACCTCTCCTACAACAAGTTCTCGGGCCAGATTCCTGCGCGCATTGGAGAACTTCAGAATCTGCAATAG


Promoter Sequence:
>Vu_02413::LG1:32986394-32988394(+)
CACATGAAAACCATCAAACAACATTTTCATACATCATCAACCAATCAATTAAATTAACTAGCTTCCCTTACCTCTTAACCGAACCGAACGACTTCTACCCTTCCAGAAATTTGCTCACACGTCCAGAAAATTCTAAGAACACCTATAGCTTACCGATTTGTAACCAAATTACCAAAAATGAAGTTAGAAAGAGGAAGAGAAGGCTTATGAACACATGCAAACAACATGGCTTACTTGCATGTGCCAGAAATTTTAGAAATTCACAAGAATTAAAGGAACGAAACTTACTAACTCTAAACACTAAACCGATCGGTGGAATGGAAAGATCTTGACACCAGGATGTCTTAGGTTTAGTCTGATTGTTGAATAGATGAAGTGAGATTGAAGGAATCTAGAGAGAAGGAGGAGAAAAGAAGAGAGTAGAAGTTTTTGGAGAGACATAGTTGTATTCAGAGAATGGGACGAGACTTTTGAAACTTTCATTTATATATCACTCTTATTTTAATCTAAACCGCTCGGTCCCATCCTTTGCTTACACCTGTCTGCTCCAAACTTCTTTAAACCTATTGGCTCTTACAGGTGATTAGGCTAAAAGGGATTAAACTGTAAGCATTCTCACATTAGAGTCTGAGGAGTCTAGTCTTTTAATTGTGCTTAATTGTTTGTGTTTGTTTTTGAGTCATGTAATTTGTTTCTAAAGCTGCCTTTAGTTTAAGGGGTAAATAGTTAGTAACATAAGACATTTTTAGCAAGGAAAGATTTGGTACTTAAGCAGTCTTTATGACTCACCTCTCTTACTTGGGACATGTCTAAGTGGAAGCTTTTAACCCTTTAGATTAAGAAAATTCTTAAAAACAAAGATGTCTTGTTATAGGTCGTCTAGGTCATCTAGGATAGAAAATTGTGATGAGATGTTTAATCAAGCTAGGAATCTTCCATTCTTTGGTAAAGACATAGGTGCATTAACATACCTAGCTTGGGAAAAAGAAATTAATAAAATAAATCCTTGGTTTTATAGAGAGAGTGAATCTTATGTCTTTAGCATATATCTCTCTAGGTTAGAAGAGCATGCAAGTGAGTGGTGGGATAATAGACAATATCATGTTAGAAAAGGTAGAAAGTCCTTCATTCGTGATTGGCATGAATTAAAAGCTTGCATGAGAAGAAAGTTTGTGCCTTCAATCATTAAAAGAAACCTAGAACTAATTAGAGATTGAATTGAAGATGGAAAATTATTTCTTGAGAGTTTAAATGATCATGGTTTCCTTCATAGAGAACTAGAATTTGGGGCAAGACTTAAAGAACTCAAGGATAAAAAAAGAGAAAGAGAGATTGAGAGAAAAGAAGAGAAAGAAATAGAGAGGAAGGAACAAGAAAAGAATGAGAGAGAAGAAAATGAGAGAAGAGAAGAAAAGAGGAGAAGAGAAGAAGAAAAGAAGAAAAGAAGAGAGAATCGCAAGAAAGGAAAAATAGAGAGGAGCAATTGCTACTGACAGCAATTCCTATGGAACCTAAAAGGGAAGGTTTTTCATTGGCTTAAATGCTTACTTGGTCCCCATGTTAAGTGGTAATTTTAATTTAGTACCCAGTTTTAAAAGTACATACATTGGGTCCCAAGGTTGTAAAAATTGTATGAATGAAGCCCTATCCGTTAAGTTGGTAGTAACGACGTTAACTCTGTGCTAACATGGTTGCACGTTTTCTCTCTCCTTTGCTGTTTCTGCCATCTTTTTCTCTCTCTTTTCTCTTCCTCTCAACTTAATTAAAAGGAGAAAGTGAATATAATATAATAATGTCCAGTGTAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAACGAGGAAAATCCATCACTACCTGTGAATCCTATTACGGTCGAACATGATACCGAATTTCGAAACCACTTGAATATTTTTGAAATTACTATATATAAATATACCAAGAGAAACATAAACCTATGGAGTGTTATGGTCGAAGAGGTTAGGCGGTGATGGAAGA


Gene Sequence:
>Vu_02413(+)
ATGGGGAAACTAAGGATGTTGGCATTTTCCTTCACTACCATTACTAAATTTCTCATTCTACTGTTATTGTGTGCATGCTTCTTATCATGCGCCCATTGTGGCTCTTTCACCGAGATCCAAGCCTTGACGTCGTTCAAGCTCAACCTTCACGACCCTCTCGGTGCGCTTAACGATTGGGACCCATCAATGTCGTTAGCTCCTTACGACTGGCGCGGGGTTTCTTGCAAGAACGAGCGAGTCACCGAGTTACGTCTGCCATGCCTTCAACTCAGTGGCCTAGTTGGTGACCGCATTTCAGACTTACACATGCTTTGAAGGTTGAGCCTTTGCTCCAACTCCTTCAACGAAACAATTCCCTAATCCCTCTCGAAATGCACGCTCCTACGCGCCTTGTTCTACAGTACAACGACCTCTTCGGCCAACTCTTACCGGAAATTGGAAACCTTGTCACTCTACAGATTCTAAATGTTGCTAGCAACAACTTCTCTGGTGAAATAGCCTCCGAACTTCCCCTGCATCTCAAGTTCGTTGACCTCTTCGCCAACGCCTTCTCTGGCCAGATTCCAACCACCAGTGTCGGTCTTTCCGAGCTTCAGCTTATCAACCTCTCCTACAACAAGTTCTCGGGCCAGATTCCTGCGCGCATTGGAGAACTTCAGAATCTGCAATAG