Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02533 LG1 37014971 37019066 PREDICTED: auxin response factor 17-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   callose deposition in cell wall, regulation of transcription, DNA-templated, pollen development, positive regulation of anther dehiscence, auxin-activated signaling pathway, pollen wall assembly, positive regulation of anther dehiscence, positive regulation of anther dehiscence, positive regulation of anther dehiscence, regulation of transcription, DNA-templated, auxin-activated signaling pathway, anatomical structure morphogenesis, pollen wall assembly, adventitious root development, regulation of transcription, DNA-templated, auxin-activated signaling pathway, regulation of transcription, DNA-templated, positive regulation of anther dehiscence, regulation of transcription, DNA-templated, pollen wall assembly, regulation of transcription, DNA-templated, auxin-activated signaling pathway, positive regulation of anther dehiscence, positive regulation of anther dehiscence, adventitious root development, regulation of transcription, DNA-templated, positive regulation of anther dehiscence, pollen wall assembly, callose deposition in cell wall, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   double-stranded DNA binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
A/G 37015720 missense_variant p.Asn194Asp
G/T 37016787 upstream_gene_variant
G/T 37016862 upstream_gene_variant
C/A 37017529 missense_variant p.Pro372Thr
A/G 37018367 upstream_gene_variant
T/A 37018375 upstream_gene_variant
C/A 37018486 upstream_gene_variant
C/T 37018997 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02533.1
MPLPQSPPNPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHSLSPPFRSLPFVPCLVSSRDLLADPFSDEVFARLLLTPLPHPFHRNNQNDDSNIQSDDEERECQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDIHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNVSVGIRRATRFVSSSSPVEEEQPPAQGEGFPLYATGRVSPKAVKAAAECVSRNAPFEVVYYPRAGFADFVVSAEVVEDAMRCAWAGGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLALHTAFSPSKRFRADQGSGLFRDREGDPFFPMIGFPNSTMGNMDKKLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYLYMGSSSFGNNTVQSLGIVSTDLNISSSQSDDTSPHSQSSLHSFDTEFTGTRHCNTKVGSGSILLFGKIIQPAESPHDAADYIERDGSGGSKEIEDS*


CDS Sequence:
>Vu_02533.1
ATGCCTCTGCCGCAGTCTCCACCCAACCCTCGCCGCGTCGATCCCAAAATCTGGCGGGCATGCGCCGGGGCCGCTGTGCACATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGCCACATGGAGCACGCTTCTCCGTCACATTCTCTCTCCCCTCCCTTCCGTTCCCTCCCCTTCGTTCCCTGCCTTGTGTCCTCCCGTGATTTGCTTGCTGATCCATTCTCCGACGAGGTCTTCGCCAGGCTCCTCCTCACTCCACTCCCTCACCCGTTTCACCGAAACAACCAGAACGACGACAGCAACATCCAAAGCGACGACGAAGAGCGCGAGTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACACCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGTGCGGACTCTGTCTTCCCTCCGCTCGATTTCCGCGCCGATCCTCCGGTCCAGCTCCTCTCCGTCACTGACATCCACGGCGTCGCGTGGCGTTTTCGCCACATCTACCGTGGTACACCACGTCGGCACCTCTTCACAACTGGCTGGAGCAAGTTTGTCAACCACAAGAAGCTCATAGCCGGCGATTCCGTTGTCTTTGTCAAGGACTCCGACGGGAACGTCTCGGTCGGGATCCGCCGTGCGACGCGGTTCGTCTCCTCATCCTCTCCTGTAGAGGAGGAGCAGCCGCCAGCGCAGGGAGAGGGGTTTCCGCTGTACGCGACCGGGAGAGTATCGCCGAAGGCAGTGAAGGCCGCAGCGGAGTGCGTGTCGCGGAACGCGCCGTTTGAGGTGGTGTATTATCCGAGGGCGGGTTTTGCGGATTTCGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAGGTGCGCGTGGGCTGGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCGTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTACAAAATGCAAAACGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCACTTCATACAGCGTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGATCTGGACTGTTTCGTGATAGGGAGGGAGACCCCTTCTTTCCTATGATAGGTTTCCCTAACTCAACAATGGGAAATATGGATAAAAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAACGATAACTCTTATCTGTACATGGGTAGTAGTTCCTTTGGGAACAATACAGTGCAAAGTTTGGGAATTGTTTCTACGGATCTAAACATTAGCAGTTCTCAATCAGATGACACGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACCAGGCATTGCAACACCAAAGTTGGTTCTGGTTCAATCCTCTTATTTGGTAAGATCATACAGCCTGCTGAAAGTCCGCATGATGCTGCTGATTACATAGAACGTGATGGTAGCGGGGGCAGCAAAGAAATCGAAGACAGTTGA


Promoter Sequence:
>Vu_02533::LG1:37012971-37014971(+)
AGACAGAGAGAGACGAGGAAGAATCAAAGCACGATCTACACCCACACCGAAGAGGGCTCCAGAGACCAACACCCACACCGAAGATGGCTCCACAGAAGGACACCGAACTGAGACCGAAGATGGTTCGAAAGAGAAAGGAAAGCATGATGGTTCGATAGAGAAGAAATCTCGAGGGTTCGACAAAGAGAGGAAAGCTCGAGGTTGAGAAATGACACCCAGCTTCCACTTAATCAGAAATATATTTTTTTAAAATAATTATTTCCCTGATCCGTATATACTATCTGTAGATAACACCTGATTCTAACTACAAACGGATAATACAACTTATATACGGATCCCATCCTTGGATAATTTTTCCGCTATCACGCGCCAACCTTATATATGGAATTTATAACCATATATAATATCCGAATATAACATTTTTTCTAAATTCCGTATATAAATTCCGTATATAATATCTGCCTTATATACGGATTTAAATCCCGTATATAAACTTCTGTATATAAATCCATTATTTCTTGTAGTGAATTTTTTCTTGTGATTTTTTATCTTCTCTTATGACAATTAAGCCTTTTTTTAATTAAAAATATAACTAATTAAATTTTTTATCTTCTCTTAGAATACAACTTTATTAAATAGAACAATATTGTTTCTTTTAATACGTGCACTGACGCAATAACTTTTATGTCGATTCTTAATAAATTTTATATTGATTAAAGAATTGATCTAGATATAAATCACATATAAATTAAATAATAAGCATTTTAAGTTATATTTTGTTTGTCGGTTAATTGTTAGAATTGTAATGGTGAGATTAGGACGATCTTCCAATGACATTCTTACAATAGTTATCTCGAGTGATTTTTTTTTTTGTAATAAATCATAACACAACAATAATTTGTCTTTATATGCAAAATTTATTAAAAATAAAAAATAAAGATAAAAAACACATCAAGTACAAACCAAATTATGTAATAAAAAATTATAACGTTCTAAACATAGATAAATAAAACCTATAATGAAAAATCTCAAATTGTAATCTATATGATGGTATTGAGTTATATCATTTATACAAAATTTGGTTTTAAGTAACCAGTTTCTCCAAACATTTAAATTTGCAAGCATTTAAATTCCATATTTTTATAAATTTTCAAACATTTTCCCACCGTCCTTTACCATATCATTCCAACCACAACTAACCAATTTACAATATACAAGTGTCAAGATACCACCAATGCGTTTCTCGTAAAGAGATTTTTCACTCCAATAGAAGAAGAAAATTAACCAATGAATTTTTCCATACTATCTCTAAACAACCCTTCACATGCAACGTTCCATCTGCACCCACTAACGGTCTCATCTGTGATGATCTTAATCCACATAACAATCGAAAAACTCTCGAACACTTATGAAATATAAGCTTCCCCAATCTAGTATTAATATAAAACAAATTCAAAACAGCAAAATCAATCATATTATTATTCATACCAATTTTATAACTTTTCCCAATCAACTGAACATAATACCTTATAGTCTATATAGCAACCTGAATAAAAATGCTGCATTGAAATCTTTCATGATTTTTCCTCCTCCATACCATCCACACACTGAAAAGTCACACCCGCGATTAGTTCTAATAAAGCACTATTAGGAAGCTTAAAAAAAGAAATTAAATTATTCATGGAAGATCAACTCAGAGCAATTAACTCAAACGCTATAAAATTTATTATTTTTATATTGATTAAAGTAACTATAATTATTTCAAATGTTATATAATTTTAGCAATTATATGTTAATTGCTTTGAGCTGTGTTAGTTTTTTGGGAAAGAGATTAATTGATTTCAAAAATGAATTATCATTTTAAAAATATATTAAGTTTGCAGATAAATTAATTTATTTAGTATGTAAGAAACTAAAAGGAAAGAAATTAGAAGCCATAAAATGCAGTATGTACTTTAACTTTTTCTCTAATAAATGAAAACATAACCGACTACCGAGAA


Gene Sequence:
>Vu_02533(+)
ATCGTTCGTTCCGAATTCGATAGACAACTGCTGCTGGAGAGAGAGAAAAGCGCGGACAGTTGCAATATTGGCAGTGGCAGTGGCACACTCCCTCACTCTCTTATTCCCCTTCTCATGTCTCAAAAGTTAAACCCTACTCCGACCTCACTTTCTCTCTAGTTCAATTCAACATGCCTCTGCCGCAGTCTCCACCCAACCCTCGCCGCGTCGATCCCAAAATCTGGCGGGCATGCGCCGGGGCCGCTGTGCACATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCGCAGGGCCACATGGAGCACGCTTCTCCGTCACATTCTCTCTCCCCTCCCTTCCGTTCCCTCCCCTTCGTTCCCTGCCTTGTGTCCTCCCGTGATTTGCTTGCTGATCCATTCTCCGACGAGGTCTTCGCCAGGCTCCTCCTCACTCCACTCCCTCACCCGTTTCACCGAAACAACCAGAACGACGACAGCAACATCCAAAGCGACGACGAAGAGCGCGAGTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACACCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGTGCGGACTCTGTCTTCCCTCCGCTCGATTTCCGCGCCGATCCTCCGGTCCAGCTCCTCTCCGTCACTGACATCCACGGCGTCGCGTGGCGTTTTCGCCACATCTACCGTGGTACACCACGTCGGCACCTCTTCACAACTGGCTGGAGCAAGTTTGTCAACCACAAGAAGCTCATAGCCGGCGATTCCGTTGTCTTTGTCAAGGACTCCGACGGGAACGTCTCGGTCGGGATCCGCCGTGCGACGCGGTTCGTCTCCTCATCCTCTCCTGTAGAGGAGGAGCAGCCGCCAGCGCAGGGAGAGGGGTTTCCGCTGTACGCGACCGGGAGAGTATCGCCGAAGGCAGTGAAGGCCGCAGCGGAGTGCGTGTCGCGGAACGCGCCGTTTGAGGTGGTGTATTATCCGAGGGCGGGTTTTGCGGATTTCGTGGTGAGTGCTGAGGTTGTGGAGGACGCGATGAGGTGCGCGTGGGCTGGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCGTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTATTTTTGTTTGCATTGTGCTTTGTGATTGAGGAATTGCATGAGTTAAATGTGTGACTGGGCCGATTTCGATAAATTTGTTGGAGAATAAAATAAAATAATCAAGGAAATAGGATGAGTTAAATGTTTTTGTGAGTTAAATTTTACTTATGCACTCGAGCATTTTTGGAAGTTCATTCATGATTCTCAGGTTAGCAATCATATACTTATACCAATTGAAAGGTTTCCTTAAGTTAGAAGTTGATCCGGACAGGGTCTTTCCTGTGCTGAAAGAAAGGATGGGATTATGCAGTGTGCTCTCGAAGTTTTTCCAAATACTAGCAACTGGTCTTTATTTGGAAAACAAAAAATGGATAGTTTATGTTAGATAAACATGCGTTTATTATGTAAAAAATATAAAAAAAGTATTTATTACTTACCATAATAGTATTTAAAGTGTTATATTTAATGTGCTCTCAGGATATATGGTTTATGAAGCTGTATAATGAAATCTTGGGATTTTGATAACTTATTGTTTGGAATGAACTTACGAGTTTTATTTTAAAAGTTTTTTTGGAGAGGGTTAATTGTTTTGCTTTATACCCAATGTGATTATCACTCAATGCACATGGGCATGATTCTATTATTGAGGGTAAGCAAATTACATCTTTTCTTATGATCGATTCTGAATAATAGCGCTTCGTGGCTACAGGAGGACAGATTTAGGGTAAGGGCAATGCAGAAAATATTCGCCCTTCAGTATTAATGAAAAGAGAAAATAGAAGCGTGATAGTACCTAATGTTGGGACAGTTTCTATTTACCTTGTTCATAAATAGGTTGAGCTGAGAAAATGGAAAACCTGCTGTACTTCAAGTTTATTAAGATATATTATATCTGTGTTTTTACTACGACTAAGGGTAAGATGTAACATTTTCTCATTTGAATCTATAAATGTATTAGGTTTTTTTTTTCTTTGTATCTAAATATTCTCCTCTGGGGTTTAGTCCGTGATAATTGAGCTATACTTAAGCTCTGCCTCTAAAGGTGATATTGTTTTGTTTAACTGGTAGTTTCTTTTCTTTTTCAAATACAGATTGCTATTATCTCCATTTATATTTTGAGTTCTTTTTCTCCTGTAATATTTTGTCAACGGATCCTGGTATTATGTCATTTGTGATGGCATACTCTTTTAATTGATAAGAAACCTTTGTCTTAGAAAATTTTGTTTTATGATTGATCTATCTGAAATGACTGCTGTCGCCTTCTTACCATTTTCTATGATCTCAACATCATAGGTTAACTGGGATGAACCTGAAGTCTTACAAAATGCAAAACGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCACTTCATACAGCGTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGATCTGGACTGTTTCGTGATAGGGAGGGAGACCCCTTCTTTCCTATGATAGGTTTCCCTAACTCAACAATGGGAAATATGGATAAAAAATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAACGATAACTCTTATCTGTACATGGGTAGTAGTTCCTTTGGGAACAATACAGTGCAAAGTTTGGGAATTGTTTCTACGGATCTAAACATTAGCAGTTCTCAATCAGATGACACGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACCAGGCATTGCAACACCAAAGTTGGTTCTGGTTCAATCCTCTTATTTGGTAAGATCATACAGCCTGCTGAAAGTCCGCATGATGCTGCTGATTACATAGAACGTGATGGTAGCGGGGGCAGCAAAGAAATCGAAGACAGTTGAGGCTTTCTATTTGTGAAAGTAGTTATGCAACAGATAAATACATGTAAAGGTATGCTATTATATCTGATTGATTTAATTCAGTGATATATTCAAGCTATTGTTGCTTTTATTGACAAAGTTTGTATTGAAGAAATGGATTATTTATCTCTATATGGCTTTTGTTGAACTGTCTCAAATCCTGGTTGAGGTATGCCTCATTGTATGATGGAGGAGTAGTTTTAATTGCTCACCAAGTTCTAGGTAATATGATTCTTCAAATAGTATTGCAATTTGATTTATTGATATCATAGATCTTATATTTCCGGGTAATTGTTATATATTGACTTCAATTAATATTTCTTTTGTTGGCTTTAGCTGGACCATCCTTTACAATTTTTTGGTATTAAAACATGGGATCTTAACATTTTGATCAAATGTATCAAACCTGTCATAATTCATCCTATACTGCAAATATTATTGATTGGAAATTATCGTATTTCATCTTGTTTAGGTCATGATAGTCGATGCTTCATTATGCATAATACAAACTTATTATCATTGTGAATTGGTTCATGATATACTCCTTTGTAAATAGTTTTTTAGTGTAATGCATCGTATTTCTGGAACTAGTGTTGGGTCATTGTGTGTGTGGTACAAGGTGCAGCTTGTAGTTGCATTGACTTCAATTGCCAAAATGAGAATTTCTGTTACCAAAATGATAGCTGTGTATACTATGAGTAGCTTATCCTGGCTAGCTTGATTTGTTGTTTGATTCATTGATTCTCTGGTTATGGTACCAAAATTCATGTATAAATTAATTTGTGCTCGTATGTGATGGCCTCTATCGCAGGCAATCAAGGCAGGCTGGTAAAGAGGAAGCTGTCCACTCTTTTGGCCTTGTTTGTGGTGGTGAAACTAATGTTTTCGAGCTATCTTTATATTTCGTATTGCTACAACTTGAATGATGAAACTAAATTCACAATATTCGATCAATTGTATGATATATTAATATCGGACATATGGTGTGTAAATATACATGTTCCTCTTTC