Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02680 LG1 39800211 39803220 PREDICTED: heat stress transcription factor A-8
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to heat, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, cellular response to heat, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, cellular response to heat
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 39800515 3_prime_UTR_variant
A/T 39800517 3_prime_UTR_variant
G/A 39800634 upstream_gene_variant
G/C 39800747 upstream_gene_variant
T/A 39800781 3_prime_UTR_variant
G/T 39800798 3_prime_UTR_variant
G/C 39800800 3_prime_UTR_variant
A/G 39800900 3_prime_UTR_variant
C/A 39801011 synonymous_variant p.Ser354Ser
G/T 39801025 synonymous_variant p.Arg350Arg
G/T 39801083 synonymous_variant p.Arg330Arg
T/A 39801176 synonymous_variant p.Pro299Pro
G/C 39801245 synonymous_variant p.Ser276Ser
A/T 39801272 missense_variant p.Asp267Glu
G/A 39801316 missense_variant p.Pro253Ser
G/T 39801335 synonymous_variant p.Leu246Leu
A/T 39801361 missense_variant p.Tyr238Asn
A/T 39801420 missense_variant p.Val218Glu
A/T 39801434 synonymous_variant p.Ser213Ser
C/A 39801736 missense_variant p.Asp113Tyr
A/T 39801774 stop_gained p.Leu100*
G/A 39801809 synonymous_variant p.Ala88Ala
T/A 39801836 missense_variant p.Lys79Asn
C/T 39801848 splice_acceptor_variant&intron_variant
G/A 39802023 upstream_gene_variant
G/C 39802061 upstream_gene_variant
A/T 39802073 upstream_gene_variant
T/C 39802163 upstream_gene_variant
T/C 39802285 upstream_gene_variant
T/A 39802293 upstream_gene_variant
G/A 39802311 upstream_gene_variant
T/G 39802336 upstream_gene_variant
C/T 39802352 upstream_gene_variant
A/C 39802358 upstream_gene_variant
C/A 39802359 upstream_gene_variant
T/C 39802414 upstream_gene_variant
T/A 39802533 upstream_gene_variant
T/A 39802547 upstream_gene_variant
A/T 39802632 upstream_gene_variant
T/C 39802642 upstream_gene_variant
A/G 39802685 upstream_gene_variant
A/T 39802742 upstream_gene_variant
T/G 39802748 upstream_gene_variant
G/A 39802792 upstream_gene_variant
C/T 39802796 upstream_gene_variant
A/T 39802871 upstream_gene_variant
T/A 39803072 missense_variant p.Tyr22Phe
C/G 39803131 synonymous_variant p.Val2Val
A/G 39803153 5_prime_UTR_variant
G/A 39803178 5_prime_UTR_variant
G/T 39803216 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02680.1
MVKSNENGSGSGAVPPFLKKCYDMVEDRNTDSVIRWSDGGDSFVISDTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKQLLKNIRRRKHPHVADQQKALPQNDNSDEPSQEVPHHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNVLDEDKQDDKPIASDGMIIKYKPPVGEKLKPVVPLPPAFEKQSEPELAADGFKDLCISSEFMKVLMDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFLGNIEDSNKESEERTDSGMEMEPIISETPNENSRTFESMIVEMEKTRE*


CDS Sequence:
>Vu_02680.1
ATGGTGAAATCGAACGAAAATGGTTCTGGTTCAGGTGCGGTGCCTCCGTTCTTGAAAAAGTGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGACGGCGGCGACAGTTTCGTCATATCTGACACCACGCAATTCTCCGTCACGCTACTTCCTACCTATTTCAAACACAACAATTTCTCCAGTTTTATTAGACAACTCAATATTTATGGTTTTAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAATTTTGTTAGGGGTCAAAAGCAATTGTTGAAAAATATACGCAGAAGAAAACATCCGCACGTTGCAGACCAACAAAAAGCATTGCCGCAGAATGACAATAGTGATGAACCATCCCAAGAGGTACCCCATCATGGCCTCTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTGACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAACAAGTTGCTGCTCCTGAGCGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCAAAGGAAAATAATTGGCGTTTGTCTGAATCATGGAATGTATTAGATGAAGATAAACAAGATGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATAAGCCACCTGTAGGTGAAAAACTCAAGCCTGTAGTTCCCCTACCTCCTGCTTTCGAAAAACAATCAGAACCTGAGCTGGCTGCCGATGGGTTCAAAGACTTGTGCATTAGTTCCGAGTTCATGAAAGTGCTTATGGATGAAAAATTGAGTCCACTAGAAAACCATTCTCCGTTTCTCCTACCAGATTTACCTGATGACGGTTCATGGGAACAGCTTTTCCTAGGCAGTCCTTTCCTGGGAAACATTGAAGATTCTAATAAAGAAAGTGAGGAGCGCACGGATAGTGGAATGGAAATGGAACCGATAATATCAGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGA


Promoter Sequence:
>Vu_02680::LG1:39803220-39805220(-)
CCGTTCTATAGAACCACATAAACTTTACGTGCATATAAGGGGGTGTTGAATTTGGATCCTTCCTATTCATGAGAAAATCCAATTTCTCCTTTTACTCTGTCTGAGGGCATCCATTAATGCTTTTCCAAAATGCTCATGGTTTAGCTAGTTCTTCCATATATTCCGCTGCCAGCATTTTGCTTATTCCTTCTGTATCAAGCTGTTTGTGGAATGGTATCTCGTATGGAGATGTATTGGTCGCTCTGGGTAATAATCTAAATCCCTTTGTTTTATATGTATGGTACCCATTTGTTGTTGCAACTGCTACAAATCTTTGCTAGAAGAAACTCTTCGAAGGATGGTTCAATCTCCAAATCTTTACTATTGTTACTAGTGAAACCCAGCTCATCACACAGTAAAACATGTCTACGGTACCTATGTTTTCTTAACTTTTTCCTTGTCTCTGTAGATGTAAAAACAAACATAACAACAAACAGAATAATGTCTGTCAGAAAAACAAAGAAACTTAAATAATGATGGCTTGACTTGCCTGTTGACCTGAATACTTCACAATTTGCCAGATCAATAAAATATTTTTGGCACATTCCTTTTAAAATATTTTTTATCAATAAATTGTGTGTGTTTTTATTAAAATAGCGGAAACTCAAGATTTTTAAAAATATCAGTATGGAACTTAACTTATCTAATATTATAGAAGATGTAATGTGAAATAGTAAGTTGGAAACATTTTTATTTACAAATTAGTACAATTAATTATTTATAGATTCAATCATTCTCAAAAAAGAAAATTATTATGCCTTTGATTATTTCTATTGATTAAACAAATGGTAAGGTATAACAAAATAAATAGTTAAAGTAAACAAAAACAAAATAGGAAATAACATTTCATGATTAAAATGGTTGAACTTTTTATAATGAATTAAATTAAACAGTTAAAGGGTCATCAATGAATTCACCAACAAATGCCACATTTTATGACCTAAAATTAAATTTGATGTTTGGGTGAACAAATTTATTATGTCATTAAGTCGCTCTTGCTCCCACTTCTTTCTTTTAATGAATTTTTTCTCCAATATTAAATAACTGGCTAACTTTTTTCTTAGGAAGCAAAGGAAATTAATTTATTATTCAGCTAAACCATAATTCATTAACAAAATAAGTTAGATTTTTGTTCACAAAATTTACATGCTTCAGTATAATTTAACCAAAAATATAAGTAGAAATCAAAATTGTTGAAATGATAGCTTGAAATACTGTAGGACTGATCAAATTTAACATATCGCACGTTTAGTGTTAAATAATTTTGAAGCTAAACATATTAGAAAAATCTTCATTTGTCAGTCATAAAAAAATGAAATCATGCTTGAAGAAAGGCTTGACCTAACATAAAAATTTATAAATAATGTTCCGAACAAACCCTATTGAAAAATAACTTTATTTTGACATAATAACAATACTTACATATTGTATCATAAGTAGGTTTTTAATACAAAATTATTCACACTGGAAGCATGTAGAGTATTTAATAAAATGTAAACTTTAAAACTAAAACTTCAACTAACTATATCTGTAATACCATTATACAATATGTAAATTTTTTTAGCAAGGTTAGTCTGTAATGCATTTCCAAATTCAATTTTAAAATTTCAGTGAATGACACATTAAAATATTTTTATATATTTTAAAAAAATTTAATTTATGTAATTGGACCGTTTCAGTTGGAACGAGAAGGATGACTCCTCCTGCAAGTAATACAGAAACGACATACTTGAATTCCGAGTAGGGAGAGTTGAACCGAACCGCATTAAAATATTGGAATAGTAAATTAAAATATAATAAAAAAAGACCAAACATAGTGAAAAAGATATACCAATATTAATTTTTAATTTATATTTAAATAAAATATCTGAGGTGTGGGTCTGATTCGAAAACCCCCAAAAAAGAAAAAGGTTGGAAAGTGCTGTGACGGTACATAAGGAGCCGCATGGAAATTTCATTTC


Gene Sequence:
>Vu_02680(-)
ATTTCGTTTGGAGTTTACAACTTTGAACTCATCTCCTCAGTTCCCTTTTCTCGCTCTTCTCTTCTCTTGTTTGTTGTATTAGCGATGGTGAAATCGAACGAAAATGGTTCTGGTTCAGGTGCGGTGCCTCCGTTCTTGAAAAAGTGTTACGATATGGTGGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGACGGCGGCGACAGTTTCGTCATATCTGACACCACGCAATTCTCCGTCACGCTACTTCCTACCTATTTCAAACACAACAATTTCTCCAGTTTTATTAGACAACTCAATATTTATGTTTGTCTCTTTCACTCTTTTCTTCAGCTCAATTCTGTATTAGTTGCTTGTTTCTCTTAGTTATCTGAAGATGAATACATAAATAAAGAAATAAATTATTATTTGGTATGTTTATGATTCGTTTTTGTCTGATTGTGTGATTCGTAAATTGGCTGCAATTTCAATGTTCTTACAGAGTGCCTGAAATTGTTGGTGGTGTTAAAAAAATTAGGTTATGGTTGTGATGTAGAAACTCGCTGTTTGATGTATATAACTCTTGCATGCACTTGAAACCCTTTCTGTAGGGTGAGCCTTTGAAATTGTGTCGGCAACTAGATGGAAAATAAATTGGTGTTTGTTCGGATGAGTTTTACCCGCTTGACAAATCGTTCTGTGCTCATAAGATATTATTTGAGTACTGTTCGTACTGTTCGTTTATTTGATTATTCATTCTTTTTTACCTTACATTTTAGAATAGTGTTCATATTTCTCATACAAGTTACTTTTGTCCAGTTAACACAATTTGGATATGGTTGCCTATTCACACTTAATTTTAACTTGAACCAGTGTTTTGTAAAGCGATATCAAGTTTGCTTATTCGAATTCAAAACCATTTTTGGACATCTATTAGCGAAGACGAGAAACATAAATTTCTATCTTTTAGGTTGAATTTGGATTTAGATCATTGCAGTTGATAGCCAAACACACTATCAATTTGGAGAATTAGATTGCTTTAAACTTAAGTTTACAAACTTTAATTCAATGCACAATCTTAGAAGAAATGTTCTGATCCATTCCCTTATTACTGGCTTTATAACTAATTAGTTGTTAATTTCTGAATTGGCCTCGATATTTCATATCAACCTAGTCACTGGGGCGGGCTCCTTGTTGACTGATAAATTAAAAGCACTTTAAATAACACCTGACTTTGTGAAATGGTACAACATCTCAAGAGTATCGGCTTGTTTATATTGATGTGCATGTTTGTTGCCTCTATTGGTTTGTTCCTTTATATCTATGTCATTTGTTATGGTTGAGGAGAGAGTCTTTTACTGTAACTAATTGGTAACTGAAATATCTAACAGGGTTTTAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAATTTTGTTAGGGGTCAAAAGCAATTGTTGAAAAATATACGCAGAAGAAAACATCCGCACGTTGCAGACCAACAAAAAGCATTGCCGCAGAATGACAATAGTGATGAACCATCCCAAGAGGTACCCCATCATGGCCTCTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTGACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAACAAGTTGCTGCTCCTGAGCGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCAAAGGAAAATAATTGGCGTTTGTCTGAATCATGGAATGTATTAGATGAAGATAAACAAGATGACAAGCCAATTGCTTCTGATGGGATGATAATAAAGTATAAGCCACCTGTAGGTGAAAAACTCAAGCCTGTAGTTCCCCTACCTCCTGCTTTCGAAAAACAATCAGAACCTGAGCTGGCTGCCGATGGGTTCAAAGACTTGTGCATTAGTTCCGAGTTCATGAAAGTGCTTATGGATGAAAAATTGAGTCCACTAGAAAACCATTCTCCGTTTCTCCTACCAGATTTACCTGATGACGGTTCATGGGAACAGCTTTTCCTAGGCAGTCCTTTCCTGGGAAACATTGAAGATTCTAATAAAGAAAGTGAGGAGCGCACGGATAGTGGAATGGAAATGGAACCGATAATATCAGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAAAACTCGAGAATGAGTTGGAATTTGGAGGGGCCAGAGTTTGGAATCTCATACTGAGCTAATGGAGCTTTTGTTTCTGAAACTAACAATATATAGGGAAGGAAGTATTAATGTCCATTATTTTTCAGCTGGGCTGTCTTCACAAATTGCTTGGCGCTATAATTATATTATAGTATTAAGTCGCAATTATTATCTCTCCTATCTTTCATGGTAGAGATCCTCATCTCGAATCCGTGTAAGCCTGCTCTCATTTATCTGTTGAGATGCTAGATATGCATGTTATTTTTGTGTGTGTGTGTGTTTTTTTGGATAGATGCTTAAACATACTTTAAGAGTTTGAAGGTTCTGTCGATATTGTGCTGTCAGTAAGGTTCAGTTTGTATCTGAAAACTAATCCTGATTTTCCTCGTGGACAGGTTTTACCATCTTGATAGATGTGAGAATGGGAGATGTCTGGTAGTGCGGCTGCCTATTTATGATGGATCGAATGTTTCTTACTTGGAGAATTATAAGGGAGAACGGCACCTTTATTTTTTGCATGTTATTGGACATGCCTTCATATATAAAATTTCATATGATGCATGCATACTACTTTTGCATATTATTGCAGAAGCCAGTGCTTCTGACATGCTGTTTGCTACCTACCTGTATAGTTCTCATGCCTCTGAACCATGTTTGTGTTTGATATGGCGGCCAAGAGATTCTGTTGCCCCCACAAAAAGTGACATCATAGTATGACATCTTTTTTTTTTCTTTGCTAAATTAAGGATCAGGGCTAACTTC