Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02687 LG1 39846736 39848418 PREDICTED: two-component response regulator ARR14-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to cytokinin stimulus, regulation of root meristem growth, regulation of root meristem growth, axillary shoot meristem initiation, cytokinin-activated signaling pathway, maintenance of shoot apical meristem identity, regulation of root meristem growth, response to water deprivation, response to cytokinin, regulation of root meristem growth, regulation of cytokinin-activated signaling pathway, cytokinin-activated signaling pathway, regulation of cytokinin-activated signaling pathway, axillary shoot meristem initiation, shoot system development, regulation of chlorophyll biosynthetic process, cytokinin-activated signaling pathway, regulation of seed growth, cytokinin-activated signaling pathway, regulation of seed growth, response to water deprivation, regulation of seed growth, root development, response to water deprivation, response to cytokinin, cytokinin-activated signaling pathway, regulation of cytokinin-activated signaling pathway, response to cytokinin, response to cytokinin, regulation of root meristem growth, cytokinin-activated signaling pathway, cytokinin-activated signaling pathway, response to cytokinin, regulation of chlorophyll biosynthetic process, regulation of cytokinin-activated signaling pathway, response to water deprivation, regulation of cytokinin-activated signaling pathway, regulation of seed growth, regulation of cytokinin-activated signaling pathway, primary root development, primary root development, cellular response to cytokinin stimulus, regulation of root meristem growth, response to water deprivation, regulation of root meristem growth, response to water deprivation, regulation of root meristem growth, cytokinin-activated signaling pathway, shoot system development, regulation of chlorophyll biosynthetic process, regulation of cytokinin-activated signaling pathway, root development, response to water deprivation, regulation of cytokinin-activated signaling pathway, response to water deprivation, callus formation, regulation of root meristem growth, response to water deprivation, regulation of seed growth, regulation of cytokinin-activated signaling pathway, response to cytokinin, cellular response to cytokinin stimulus, response to water deprivation, response to water deprivation, response to cytokinin, response to cytokinin, response to water deprivation, regulation of anthocyanin metabolic process, regulation of cytokinin-activated signaling pathway
Cellular Component   located in   chloroplast, cytoplasm, nucleus, chloroplast, cytosol
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, phosphorelay response regulator activity, phosphorelay response regulator activity, transcription cis-regulatory region binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
T/A 39846769 missense_variant p.Leu12Met
A/G 39846877 upstream_gene_variant
T/A 39847070 upstream_gene_variant
C/A 39847077 upstream_gene_variant
A/G 39847096 upstream_gene_variant
A/C 39847098 upstream_gene_variant
T/A 39847103 upstream_gene_variant
A/T 39847113 upstream_gene_variant
A/C 39847154 synonymous_variant p.Ser80Ser
C/G 39847163 missense_variant p.Phe83Leu
G/A 39847297 missense_variant p.Arg128Lys
G/C 39847427 stop_lost p.Ter171Tyrext*?
C/A 39847703 upstream_gene_variant
A/T 39847846 missense_variant p.Gln242Leu
C/A 39847848 missense_variant p.Gln243Lys
T/A 39848018 missense_variant p.Phe299Leu
C/T 39848025 missense_variant p.Pro302Ser
A/T 39848119 missense_variant p.Asn333Ile
G/T 39848379 stop_gained p.Gly392*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02687.1
MFLSSTVTSFFLISSRKHATSILMKFMVCSESLHAVNILQKGKTNIHLIVIEVYMPVMDGCEFLLFVKKEGIDVPVIVMSHDDSKHCMMKTIRLGACDYWKKPLKEDMLKDMWTHAFRKFVREHSTQKDIGRLDDDDKTRGTSHNSESASSILDTSKSNFREDDDLDESEYSSLTATGKDRIVWTPELHTKFLDALESVGPENIVPKKILKAMNMPKLKRGHVASHLQNYRNFLKEERKQQQQQQNEPNEMSLVSGNKKPKVQASEENNLQTSTHPDLTCNMGPTREKPYDLNVQVSEHFHEPTLAHDLSYSLATFPNISITNNFPQSSGYGLNNMQKPMMRPEIPPINLQPSSIIISDNSASVPPQSIPGFSNSGVRPFAASSDIDDQTIKKELDSKNNDHHKP*


CDS Sequence:
>Vu_02687.1
ATGTTCTTGTCATCGACAGTGACCTCATTTTTCTTGATTTCATCAAGAAAACATGCAACCAGTATTCTTATGAAGTTCATGGTATGTTCTGAATCTCTACATGCTGTCAATATTTTGCAAAAAGGAAAAACGAATATTCATTTGATAGTCATTGAAGTTTATATGCCTGTCATGGATGGCTGCGAATTCCTGCTATTTGTCAAGAAAGAAGGAATTGATGTTCCTGTCATAGTGATGTCTCATGATGATTCTAAGCATTGTATGATGAAGACTATTCGGCTTGGAGCTTGCGATTATTGGAAGAAACCCTTGAAGGAGGATATGTTAAAGGACATGTGGACACATGCTTTTAGAAAGTTTGTAAGGGAACATAGCACCCAAAAAGATATTGGCAGGTTGGATGATGATGATAAAACAAGAGGGACAAGTCATAATTCTGAATCTGCTTCATCCATTCTTGATACGAGCAAAAGTAATTTCAGAGAAGATGATGATCTTGATGAATCAGAATATAGTAGTCTAACTGCCACAGGGAAGGATCGCATAGTATGGACACCAGAACTGCATACTAAATTTCTTGATGCTCTTGAAAGTGTTGGACCCGAAAATATCGTGCCAAAGAAAATTCTGAAAGCCATGAACATGCCTAAATTGAAAAGAGGACATGTTGCTAGTCATCTGCAGAACTACAGAAATTTTTTGAAAGAGGAGCGAAAACAGCAACAACAACAACAGAATGAACCAAATGAGATGTCATTGGTTTCAGGTAATAAAAAACCAAAGGTGCAAGCATCAGAAGAAAACAACTTGCAAACTTCGACACATCCTGATCTGACATGTAACATGGGGCCAACAAGAGAGAAACCCTATGATCTAAATGTACAAGTTTCTGAACATTTTCATGAACCAACTTTGGCACATGATCTTTCTTATTCTTTGGCAACGTTTCCTAATATTTCCATTACTAACAATTTTCCTCAATCTTCTGGATATGGACTAAATAATATGCAGAAGCCAATGATGCGTCCTGAAATTCCTCCGATCAACTTGCAGCCATCCTCCATTATTATTTCAGATAATTCAGCTTCTGTTCCACCTCAATCAATACCAGGTTTCTCAAATAGTGGTGTGAGACCTTTTGCTGCCTCCTCAGATATTGATGATCAAACAATCAAGAAGGAGCTAGATTCTAAGAACAACGACCATCACAAGCCCTGA


Promoter Sequence:
>Vu_02687::LG1:39844736-39846736(+)
AGTTGTATTGATTATTACACCGTTCGATTATACTGTTGTGACGATCGTTCTTGTAATGTGACAATCGCTCTTGTATTGTGACGATCGCTTTGACTCAATGCATCGTTCAGTATCACTGACCTGAACCGCTCGAATGTGTTGATTTATTATATCCTTCGATCTCACTGACTTGCACTGGTTGGTTTACAGTTAGGTTTGTAGCTTATGCTATTCTGTTTAGTTTCTATTATTCTGTTTTAGTTTCTTTTCCTATATATTTTTGTATCTCTTTCAACAATTCAATAAACTTTCTATCTTTCTTGGCCTATTTTTCTCGGGCTTCTTCTCTCTTCTCTTTTCTCCCCTTTATCATCTTTCTTTTCCACTATTGGATAATAAATCTATGAGCTCCAACTAAATCAAATTAAAAGAATAAAGCATATTACATCATTCTACCACAACTAAAAATACTAAATAAGATTTAGACAAGCAGGAATCGTAATCCAACGTTCTTCATTCAAACCAGAAACACCAGCTCTTTGCCGGACCTAGACAACATTGCACCTAGAAATCGAGACCTCGCATTCCTTTCCAGCGACAAACCGAATGCACCAAAATCCAAAACACCAACAAATAGGAACATAAAACGGTAAACAAACATGAGCAAAATTATATATATCAATGGATTTTGGTATAATTTATTATGTATGCTGTTAACTACATGAAATTTCTAACCTTGTCGATCGGAGGTACCCCGATTCTCCTCTTCTACCACTCGATCGCCGCCGCCCCGCATTTATCACCCAGCGGACTGGTATGAGTGCCGCTGTCGAGCTCCACCGAAGACGGTGGCACGAATGCAAGGGTTATGTGACAAGTTTCAGAGATAATAAAAGTTCTAACTATCCTAACCTACTTCATGGAGACTTTGTATATACGTACATTTGCATGAGTAAGAAAATAAAAGAGACGAAAATAAAATTTATTTACTATATTTAATATTCTTTTATCCATTTCAATCTTTTTATATTTAATACTAAATCTAAATAATATTTGTTTAATTATCATTAGTTATTAAATAACATTATATTATTATTTAAAATGTGTAATATAAGGATAAAATGTAATTTTTATATATTAAAGCGTAGGGAAAGAAAATACTTTATGAGTGAATTTTATAAATATAAAATAATTCAAACAATTAAAAATAAGAAGAAAAAGTGTGTCAGAAAAGAAAAAAAAAAGATAGAGTATGAAACCAAAGACTAAAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTCCAAAACAAATATTTTACATAACAGAATCTAATACTTATTCCATTAATATCAGAACCAACTTTTCTATATATGTTAAAATTGTATGGTGTTAAAAAAACAAAATCAGAACATTAAGGTTGGAAAATGTTTTGTAAATTGATACTTTTAATAATATTTTTTTAACTTCAATCCAAATGTAGTTTTTTAATTTACAAATCTTAAATATTTTCTTACAAATAAGTATGTACGAATAAAACAGAAAAAAAACCTAAGAGGGAGAGATTTTCATCTATATTAAAAAATAGTTATTGTCTATCATTTATGTTATTTCCATGTAAATAAAAAGAAATAATTGTTTCTATTTTATGTAAAACATAGATTTAATACGATAGCAATGAGTAATTTATTTAGTTAATTTAATTTTATATAATGAAAATCACATTAAATAAAAACCCTAAATACATATAAAACCCTAAATCACATTAAATCATATTTATTTAATGTGTTGTGTGAAATATTACCTTAGACAGTTTACTTTTGTCAAAATCTTTATCAATTTAGAGAGGATTTGAAATTACCCACCCATTGTTAGTTAACAAAACATACCTTATATATATTTCTTTCTTTCAGTTGCTTTCTCAACAGTGTAAAGTGATGGCCGAAATTTCTTCTACTGACCTCCCTGAATTCCCATCAATTCTCAA


Gene Sequence:
>Vu_02687(+)
ATGTTCTTGTCATCGACAGTGACCTCATTTTTCTTGATTTCATCAAGAAAACATGCAACCAGTATTCTTATGAAGGTTAGATATACACCATTCTATTGATAATCCTTTGTTAAGAGAAAGATAGATTCTTTTCTTATCTTGATGCTTGTTTGGAGTTGTGTGCAGTTCATGGTATGTTCTGAATCTCTACATGCTGTCAATATTTTGCAAAAAGGAAAAACGAATATTCATTTGATAGTCATTGAAGTTTATATGCCTGTCATGGATGGCTGCGAATTCCTGCTATTTGTCAAGAAAGAAGGAATTGATGTTCCTGTCATAGGTATGTAAGTTGTGGTTTACAGTTTTACTCAAAGTTTTAAATTTTTGACTGATAAAGAATAACTTGAACTTGTTTTACAATCTGTAGTGATGTCTCATGATGATTCTAAGCATTGTATGATGAAGACTATTCGGCTTGGAGCTTGCGATTATTGGAAGAAACCCTTGAAGGAGGATATGTTAAAGGACATGTGGACACATGCTTTTAGAAAGTTTGTAAGGGAACATAGCACCCAAAAAGATATTGGCAGGTTGGATGATGATGATAAAACAAGAGGGACAAGTCATAATTCTGAATCTGCTTCATCCATTCTTGATACGAGCAAAAGTAATTTCAGAGAAGATGATGATCTTGATGAATCAGAATATAGTAGTCTAACTGCCACAGGGAAGGATCGCATAGTATGGACACCAGAACTGCATACTAAATTTCTTGATGCTCTTGAAAGTGTTGGACCCGAAAGTATGATTCCTGGGCAATTGTTTTATTTTTCTTCATTCATCGGATATTTCTTTTTAGGTGTATTGATCGACTTAATTATTTTTTTTAGATATCGTGCCAAAGAAAATTCTGAAAGCCATGAACATGCCTAAATTGAAAAGAGGACATGTTGCTAGTCATCTGCAGGTTAGTACATTTGATTTTCTAGATTTGATTATTACTTCAGTATTTATTGTTTAGTGTGTTTTTGTGTAGAAATACAGAAAATCTGATGTTGAATGGAAACTGAAATTTTGATTGACAGAACTACAGAAATTTTTTGAAAGAGGAGCGAAAACAGCAACAACAACAACAGAATGAACCAAATGAGATGTCATTGGTTTCAGGTAATAAAAAACCAAAGGTGCAAGCATCAGAAGAAAACAACTTGCAAACTTCGACACATCCTGATCTGACATGTAACATGGGGCCAACAAGAGAGAAACCCTATGATCTAAATGTACAAGTTTCTGAACATTTTCATGAACCAACTTTGGCACATGATCTTTCTTATTCTTTGGCAACGTTTCCTAATATTTCCATTACTAACAATTTTCCTCAATCTTCTGGATATGGACTAAATAATATGCAGAAGCCAATGATGCGTCCTGAAATTCCTCCGATCAACTTGCAGCCATCCTCCATTATTATTTCAGATAATTCAGCTTCTGTTCCACCTCAATCAATACCAGGTGAAAACAACATAGGTCAAGTTATTCAGTATCAGTACAACAACAGAGCTTTTATGTATTACTCACAGCCTCTAAATTGCAGGTTTCTCAAATAGTGGTGTGAGACCTTTTGCTGCCTCCTCAGATATTGATGATCAAACAATCAAGAAGGAGCTAGATTCTAAGAACAACGACCATCACAAGCCCTGA