Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02782 LG1 40742135 40745110 PREDICTED: leucine-rich repeat extensin-like protein 4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root development, organic hydroxy compound metabolic process, cell wall biogenesis, phyllome development, defense response, developmental growth, phyllome development, cell differentiation, lipid metabolic process, root development, plant-type cell wall organization or biogenesis, plant epidermis development
Cellular Component   located in   plant-type cell wall, extracellular region, plasmodesma, plant-type cell wall
Molecular Function   enables   structural constituent of cell wall
SNP Position Effect Amino acid change
C/A 40742281 3_prime_UTR_variant
G/A 40742299 3_prime_UTR_variant
G/A 40742310 3_prime_UTR_variant
T/C 40742324 3_prime_UTR_variant
C/T 40742329 3_prime_UTR_variant
C/G 40742495 3_prime_UTR_variant
G/C 40742581 3_prime_UTR_variant
C/A,T 40742582 3_prime_UTR_variant
C/G 40742587 3_prime_UTR_variant
G/A 40742655 synonymous_variant p.Tyr751Tyr
T/C 40742751 synonymous_variant p.Pro719Pro
G/T 40742855 missense_variant p.Pro685Thr
G/A 40742986 missense_variant p.Ser641Leu
G/A 40743065 missense_variant p.Pro615Ser
G/C 40743070 missense_variant p.Pro613Arg
G/T 40743090 synonymous_variant p.Pro606Pro
G/A 40743130 missense_variant p.Pro593Leu
C/A 40743147 synonymous_variant p.Pro587Pro
G/C 40743183 synonymous_variant p.Gly575Gly
C/A 40743299 missense_variant p.Val537Leu
C/T 40743372 synonymous_variant p.Ser512Ser
C/T,* 40743512 missense_variant p.Gly466Arg
C/T 40743549 synonymous_variant p.Gly453Gly
A/C,* 40743574 missense_variant p.Val445Gly
A/C,* 40743576 synonymous_variant p.Pro444Pro
A/*,G 40743590 missense_variant p.Ser440Pro
A/*,T 40743591 synonymous_variant p.Ser439Ser
T/A,* 40743597 synonymous_variant p.Pro437Pro
T/C,* 40743600 synonymous_variant p.Ser436Ser
G/A,* 40743613 missense_variant p.Pro432Leu
C/T,* 40743663 synonymous_variant p.Gly415Gly
A/C 40743678 synonymous_variant p.Ser410Ser
G/A 40743692 missense_variant p.Pro406Ser
T/A 40743722 missense_variant p.Thr396Ser
C/T 40743773 missense_variant p.Asp379Asn
G/T 40743870 synonymous_variant p.Leu346Leu
C/A 40744098 missense_variant p.Leu270Phe
A/G 40744100 synonymous_variant p.Leu270Leu
C/G 40744248 synonymous_variant p.Val220Val
A/G 40744257 synonymous_variant p.Asn217Asn
C/T 40744389 synonymous_variant p.Ala173Ala
G/A 40744390 missense_variant p.Ala173Val
G/C 40744488 synonymous_variant p.Leu140Leu
G/A 40744659 synonymous_variant p.Arg83Arg
A/T 40744822 missense_variant p.Leu29His
C/G 40744979 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02782.1
MKKKQGHSFNLRLLLVGFFLATCANASPLTPTQSRHLLYYRDEFGDRGENVTVDPSLAFQNDRLRNAYIALQAWKLAILSDPRNQTTDWVGSDVCSYTGVYCAQALDNPSVRTVAGIDLNHQDIAGYLPEELGLLVDLALFHINSNRFCGTVPHTFRKLVLLYELDLSNNRFAGRFPEVVLRLPSLKFLDLRFNEFEGAVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPHSLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPSAVGNAVSLEQLNVAHNLLSGQIPPSICMLPHLLNFTYSFNFFTGEPPACLALPAFDDRINCLPARPVQRPPAQCQAFLSKPVDCNSFNCKPFVPSPLSPTTPATPSPPSPGTPSPPSPGTPSPVTPSPPSPGTPSPVTPSPPSSGTPPVTPSPPSPGTPSPGTPSPPSPGTPLPVTPSPPSPGSPSPVTPSPPSPGTPSPVNPSPLPSPTTPSPPSPAAPSPLPSPTTPSPLPTPPSEPPVVGHSPPPRPVAPSPLPPIHTPPSPVYLPPPHSSPAPPGYSSQPPPPSQLPPPSYTPPSPVTPFPTPTPPNGVHSPPPPAPTFSTPPPSHNYGSSPPPTPHHSPSPHPYPYLSPPPPPYPVRVPPPPPPCTELLPPPPQSTPSPTPYLPPPSPSHPPYHPPPSPSPSPTPPVQYSSPPPPPPPPAVSPPPPVVYQNPPPAPVYEGPLPPIVGLPYASPPPPPFY*


CDS Sequence:
>Vu_02782.1
ATGAAGAAGAAACAAGGACACTCCTTTAATCTCAGACTCCTCCTCGTTGGCTTCTTTCTGGCCACATGTGCCAATGCCTCCCCTCTCACGCCAACTCAATCGCGCCATCTTCTGTACTACAGAGACGAGTTTGGAGACAGAGGGGAGAATGTCACCGTAGACCCTTCCCTTGCTTTCCAAAATGACCGTCTCAGAAACGCTTACATAGCTCTGCAAGCTTGGAAGCTCGCCATTTTATCTGATCCCCGCAACCAGACAACCGACTGGGTAGGATCCGACGTTTGTAGCTACACCGGTGTATACTGTGCACAAGCGCTCGACAACCCCTCCGTCCGTACAGTCGCCGGCATTGATCTCAACCATCAGGACATTGCCGGCTATTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTCTTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACACGTTCCGGAAGTTGGTACTCCTCTACGAGCTGGATCTCAGTAACAACCGCTTTGCGGGGAGGTTCCCCGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTTAGGTTCAACGAATTCGAAGGAGCTGTGCCCCGGGAATTGTTCGACAAAGATCTCGACGCCATTTTCATCAACGACAATCGTTTCGTGTTTGACCTTCCAGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGATTCCACGGCTGCATTCCCCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAATCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTCGGCCCCTTACCAAGCGCCGTTGGAAATGCCGTCAGCTTGGAGCAGCTCAACGTGGCCCACAACTTACTCTCCGGTCAAATTCCTCCCAGTATATGTATGTTGCCTCACCTTCTCAACTTCACTTACTCCTTTAACTTCTTCACCGGCGAGCCTCCTGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGATCAACTGCTTGCCGGCGAGGCCCGTTCAGAGGCCTCCGGCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAACTGCAAGCCATTTGTTCCTTCACCTCTTTCCCCCACAACACCTGCAACTCCTTCACCACCATCTCCTGGGACACCTTCTCCTCCATCACCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCAGGGACACCTTCACCTGTAACTCCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTTACCTGTAACTCCTTCGCCACCATCTCCTGGGTCACCCTCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCCGTAAATCCTTCGCCGTTACCTTCACCTACAACACCTTCGCCTCCTTCGCCTGCCGCACCTTCCCCATTACCTTCACCTACGACACCTTCACCACTACCTACACCTCCTTCGGAACCACCGGTGGTGGGACATTCCCCTCCACCCCGGCCAGTGGCACCTTCTCCACTACCACCAATTCACACTCCTCCTTCACCGGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGGCTACTCTTCACAACCTCCTCCACCTTCGCAATTGCCGCCTCCATCATACACTCCGCCTTCTCCAGTGACACCTTTTCCTACTCCAACGCCACCCAATGGTGTCCACTCTCCACCGCCACCGGCTCCTACATTCTCGACACCACCACCTTCACATAATTATGGCTCATCGCCACCTCCTACACCTCATCACTCACCATCGCCTCATCCTTACCCTTATTTATCACCCCCACCACCTCCTTATCCTGTTCGTGTCCCACCTCCACCACCACCTTGTACAGAACTTCTTCCACCCCCTCCGCAATCAACACCTTCTCCCACACCTTACCTCCCACCACCATCCCCATCTCACCCACCTTATCACCCGCCACCATCCCCTTCTCCCTCTCCAACTCCACCGGTTCAATACAGTTCGCCTCCCCCGCCGCCTCCTCCACCGGCAGTTTCTCCACCGCCACCTGTTGTATACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATAGTGGGACTCCCATACGCATCGCCTCCGCCTCCACCCTTTTATTGA


Promoter Sequence:
>Vu_02782::LG1:40745110-40747110(-)
TTTTCAGTGAGGTTATTTTTGTAAAACCAAATATTTCACATACAAGAGGATGACATCATGGACTAATCTTGCATTCATCTATAAATCACTTTAAACAAACACAAAGAAACATAACAAATCCACGTTTTTTATTATATTTAAACAGTAAATCCTCATAAAATAACACAATTTAAACATTTTAGACATTTCATTTAACACAATCTCAACACAAATACAAATAATGATAATGATCACACATGATAATTACTTCCTACAAGTTATTTTTAGTATTGAAATATATATATGTTTTTGGAATTATATAACGAGAGTGGAAATGTAAAACTTAACAACTTTGTTTTTATATTATGAATTGTATATATCTTAATTTTCAATTGAAATTTCTTGTCATGTTAATTATATATTTGTTCTTACCATCTTTCTATGCGCCTTTTTGTCATGTTTTAATTAAGCTGAGATTAAAAATAAATAAATACTCATTTATCAATTTTATGTATCTTTTAAAAATAAAATTATGATAAAACACATATTTCAATATACCTCAAATAAAAAAGAATTAACTCTAACTATATTAATCGAAAATTTAAGATCAAAACAGTATTTTTTTAGTGTTATCTCACATATTTTAAACTTTATTTACTATATATGTATTTGAAATGAAAACTTGATAGATATTTTTCATTAACATAAATTTTAGAAAACTATTCAAAAGTCAAATTCATTCAAATAAAGTTTTAAAAATTAAGTTTATTATCCATCCCATCCAATAAATTATGTTTGGCATTAGAAAAAGATAAGGTAGAAAAATTAGATTTTAGTTAAATTTTGATATATAATAGTGTAAAATATTTTAGTAAAGTTGTGAGGGTGATATCGGAAAAGGGTGGAAGGAGCTAACGGTGAAGCGCGTGGGTCCCAATAGGACAGTTTGAGCGGATGTCGTTTTGCGTCGCGCAGGGGACAGGTTTCTTCCGCCATCTTGAGTGGGTCCCAATCCCAAAGGCGAGAGTCCACAGTAGTGTGATGTGGACGCGCATCACGTCACGTTATGTTATGGAGATGCAGGAGAAACAAGAAAGTGGGATTCAATCTAAAGTGACACAGCAAAGGAGCATGAATGAACTGGTCAAGGACAAATTCACTCATGCTTCTCCTGTTAGCTTAGCTGTCATTAAATCTTCTCTTATTTCTCTTTGTTGCTTATTATTCCATACAAAACAACTATTAATAACCTTTATTTATTCATACATCCTTTAATATATATCAGTTTCTTATAATTTTATCAAATTTATCAATTAAAGATTAAAACTAAAACATACAGTAATCATTATTAACCTATTACATCTCTCCATCGTTGATTGGCTTAAATGTTTGATAATAATAATAAAAATGTTTACTTTCTAGATTTGATATCAATAAGAGAATAGTAATTGGTATAAGAAATTATAATATTATTAAAATAGATATAGTATAGTTTTTTAAAATAAGTGAAATTAGTGACGGAGTATTACATTTTTTAAGCATTATAAGAAAACGTAATTAAATTTGAGTTGAAGAAATAATATAATTACATGGTGCAAATAAAAGAAAATGTGAGGAGTAATGTGCGGTCAGGTTTGGAAAGAAGGTGGTGGAAAGTAACGTAACGAATTTATAGCGTTTGGCGGGGACGTAGAAGTGGAACTCTGTACAGACCCATTCGCTTTCTTATGCGACCAACCATACATAAATTTCATAATTCAAATAATTAAATAAATAAATTCACTGGATTCAAGTTAATTACGCTTAAAACTACACTTAACATACGTTTAAATATATCCTAATTAATTAATATATTAATATTTTAAATATTAACACTGCAGGGTGAACAGAGAGAATCAATTCAATATCGAGGACTGGCAGAGTACGTGTCCATAGATTTAAAACCACACCACCAATAAACTCTGATACGGTTATCTGCGTTTTCAGGTATTAATAATGATAATATTATTAATTTTAAAACG


Gene Sequence:
>Vu_02782(-)
AGAGGGGAAAATGGAAGTGAATAATTAAAAGAAAAATAAACAGGGAAGAGAGAATCTGGTGTGGTTTGAGCTGTGGCATAGCTGTCCCTTGGATGAATTATTTTTGAGACGTTATCTGCTCATAAAAAAGAGGCAGTGAGTTCAAAAATCCCTGGGACAAACCCTTTTCTGGCACCCTCTTCCTCTCTTCTGCCTCATGTGAGATGAAGAAGAAACAAGGACACTCCTTTAATCTCAGACTCCTCCTCGTTGGCTTCTTTCTGGCCACATGTGCCAATGCCTCCCCTCTCACGCCAACTCAATCGCGCCATCTTCTGTACTACAGAGACGAGTTTGGAGACAGAGGGGAGAATGTCACCGTAGACCCTTCCCTTGCTTTCCAAAATGACCGTCTCAGAAACGCTTACATAGCTCTGCAAGCTTGGAAGCTCGCCATTTTATCTGATCCCCGCAACCAGACAACCGACTGGGTAGGATCCGACGTTTGTAGCTACACCGGTGTATACTGTGCACAAGCGCTCGACAACCCCTCCGTCCGTACAGTCGCCGGCATTGATCTCAACCATCAGGACATTGCCGGCTATTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTCTTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACACGTTCCGGAAGTTGGTACTCCTCTACGAGCTGGATCTCAGTAACAACCGCTTTGCGGGGAGGTTCCCCGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTTAGGTTCAACGAATTCGAAGGAGCTGTGCCCCGGGAATTGTTCGACAAAGATCTCGACGCCATTTTCATCAACGACAATCGTTTCGTGTTTGACCTTCCAGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGATTCCACGGCTGCATTCCCCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAATCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTCGGCCCCTTACCAAGCGCCGTTGGAAATGCCGTCAGCTTGGAGCAGCTCAACGTGGCCCACAACTTACTCTCCGGTCAAATTCCTCCCAGTATATGTATGTTGCCTCACCTTCTCAACTTCACTTACTCCTTTAACTTCTTCACCGGCGAGCCTCCTGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGATCAACTGCTTGCCGGCGAGGCCCGTTCAGAGGCCTCCGGCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAACTGCAAGCCATTTGTTCCTTCACCTCTTTCCCCCACAACACCTGCAACTCCTTCACCACCATCTCCTGGGACACCTTCTCCTCCATCACCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCAGGGACACCTTCACCTGTAACTCCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTTACCTGTAACTCCTTCGCCACCATCTCCTGGGTCACCCTCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCCGTAAATCCTTCGCCGTTACCTTCACCTACAACACCTTCGCCTCCTTCGCCTGCCGCACCTTCCCCATTACCTTCACCTACGACACCTTCACCACTACCTACACCTCCTTCGGAACCACCGGTGGTGGGACATTCCCCTCCACCCCGGCCAGTGGCACCTTCTCCACTACCACCAATTCACACTCCTCCTTCACCGGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGGCTACTCTTCACAACCTCCTCCACCTTCGCAATTGCCGCCTCCATCATACACTCCGCCTTCTCCAGTGACACCTTTTCCTACTCCAACGCCACCCAATGGTGTCCACTCTCCACCGCCACCGGCTCCTACATTCTCGACACCACCACCTTCACATAATTATGGCTCATCGCCACCTCCTACACCTCATCACTCACCATCGCCTCATCCTTACCCTTATTTATCACCCCCACCACCTCCTTATCCTGTTCGTGTCCCACCTCCACCACCACCTTGTACAGAACTTCTTCCACCCCCTCCGCAATCAACACCTTCTCCCACACCTTACCTCCCACCACCATCCCCATCTCACCCACCTTATCACCCGCCACCATCCCCTTCTCCCTCTCCAACTCCACCGGTTCAATACAGTTCGCCTCCCCCGCCGCCTCCTCCACCGGCAGTTTCTCCACCGCCACCTGTTGTATACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATAGTGGGACTCCCATACGCATCGCCTCCGCCTCCACCCTTTTATTGATTCTTTTGAGGACTTTTTCCCTCGTCGGGCAACAAGAGTCACGCTTTTTTTTATTATTGCGGCCGTTTCTTCTGTGTTGATACCCTCGAATGTCATGCGACTCTCGTCGCTTATGAAGGAAACTTCGCAGGAGACAACCACAAGATCTAGCGAAACAGCTTTTTGTTCTTTATATCTATCGACAATAGAAACAGAGAAGAGGTTGCAGCAAAACGGGGTTTATAAGAGGAGAAATTAATTCTCTTTCCTTATTGACTTGAATTATTATGAATATTGCAGTCGAGAAATAAGAATGGCAGAAAAAGAGTAGGTCGCAGAGCAAATGCATGTATAGGGATGAATGGGAGAGCATAAGTTATGGCTGCAAAGGCAGTTGCATTGCAGTTGCACTTTGTGCTGCCGCTGATGGTTACTAGTGTATCGTTATTGTCTCTATTATATCACACTACTTTTATTTATTTATTTATAAATTTTGTTTCTTTTGCTTGCT