Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_02802 LG1 40902693 40905008 PREDICTED: cyclin-dependent kinase F-1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of cyclin-dependent protein serine/threonine kinase activity, protein phosphorylation, regulation of cyclin-dependent protein serine/threonine kinase activity, regulation of cyclin-dependent protein serine/threonine kinase activity, protein phosphorylation, protein phosphorylation, maintenance of root meristem identity, protein phosphorylation, maintenance of root meristem identity, protein phosphorylation, regulation of cyclin-dependent protein serine/threonine kinase activity, regulation of cyclin-dependent protein serine/threonine kinase activity, regulation of cyclin-dependent protein serine/threonine kinase activity, protein phosphorylation
Cellular Component   is active in   mediator complex, nucleus
Cellular Component   located in   nucleus, cytoplasm, cytoplasm, cytoplasm, cytoplasm
Molecular Function   enables   protein binding, protein serine/threonine kinase activity, cyclin-dependent protein kinase activating kinase activity, protein binding, protein binding, cyclin-dependent protein kinase activating kinase activity, cyclin-dependent protein serine/threonine kinase activity, cyclin-dependent protein kinase activating kinase activity, cyclin-dependent protein kinase activating kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein kinase activating kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, protein binding, cyclin-dependent protein kinase activating kinase activity, RNA polymerase II CTD heptapeptide repeat kinase activity, cyclin-dependent protein serine/threonine kinase activity, protein serine/threonine kinase activity, cyclin-dependent protein serine/threonine kinase activity, cyclin-dependent protein kinase activating kinase activity, protein binding, protein serine/threonine kinase activity, cyclin-dependent protein kinase activating kinase activity
SNP Position Effect Amino acid change
T/C 40902753 3_prime_UTR_variant
G/A 40902827 3_prime_UTR_variant
C/A 40902948 3_prime_UTR_variant
A/C 40902954 3_prime_UTR_variant
A/T 40902986 3_prime_UTR_variant
G/A 40902995 3_prime_UTR_variant
A/G 40903236 synonymous_variant p.Leu363Leu
A/C 40903260 synonymous_variant p.Pro355Pro
C/G 40903277 missense_variant p.Glu350Gln
C/G 40903378 missense_variant p.Arg316Thr
T/A 40903379 missense_variant p.Arg316Trp
T/G 40903381 missense_variant p.Asn315Thr
G/T 40903538 missense_variant p.Pro263Thr
A/T 40903754 missense_variant p.Cys191Ser
C/A 40903761 missense_variant p.Glu188Asp
A/G 40903923 upstream_gene_variant
G/A 40903969 upstream_gene_variant
A/G 40903975 upstream_gene_variant
A/G 40904039 upstream_gene_variant
A/G 40904054 upstream_gene_variant
C/G 40904055 upstream_gene_variant
G/A 40904076 upstream_gene_variant
C/T 40904133 upstream_gene_variant
T/A 40904150 upstream_gene_variant
A/G 40904250 upstream_gene_variant
A/C 40904372 upstream_gene_variant
G/A 40904404 upstream_gene_variant
G/A 40904471 missense_variant p.Leu155Phe
G/A 40904481 synonymous_variant p.Ser151Ser
G/C 40904482 missense_variant p.Ser151Cys
G/A 40904490 synonymous_variant p.Leu148Leu
T/C 40904542 missense_variant p.Asp131Gly
G/A 40904547 synonymous_variant p.Gly129Gly
G/A 40904562 synonymous_variant p.Ile124Ile
G/A 40904601 synonymous_variant p.Asn111Asn
C/G 40904606 missense_variant p.Asp110His
C/G 40904607 missense_variant p.Lys109Asn
G/A 40904691 synonymous_variant p.Tyr81Tyr
A/G 40904703 synonymous_variant p.Val77Val
T/C 40904711 missense_variant p.Ile75Val
G/A 40904868 synonymous_variant p.Tyr22Tyr
A/G 40904956 5_prime_UTR_variant
T/A 40904975 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_02802.1
MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLQGFPNIVVMHEYFWRDDEDAVLVLEFLRTDLATVIADAAKDNQPLPAGQLKRWMIQILSGVDACHRNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDDSNKHEEYSRDIDNEDTCTNTHDGNATCTTSDINREDEENELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESVWVGCSKLPDYGIISFSKVENPAGIEACLPNRSPDEVALVKRLVCYDPAKRATAMELLNDKYFNEEPLPVPISELPVPLNRNGQDEDSPGGWGDLDGMESDSDFDEFGPLNITRTGTGFSIQFP*


CDS Sequence:
>Vu_02802.1
ATGGAGATGGATCCCCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCGGGGGCTTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGATGGCCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAATCTGCTTTCCGAGAAATCGACGCGTTGCAACTCCTCCAGGGATTCCCAAACATCGTCGTTATGCACGAATACTTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGACAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGGTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGTCATCGCAACATGGTCCTCCACCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAATGGCCTCCTCAAGATCGCCGATTTCGGACAGGCAAGAATTCTTACGGAGCCTGGATTTGATGATTCTAATAAGCATGAAGAGTATTCTAGAGACATTGATAATGAGGATACTTGTACTAATACTCACGATGGAAATGCAACATGCACCACAAGTGACATAAACAGGGAAGATGAAGAGAACGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATTAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTAATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCTATTTCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTTGGCCCGCTCAATATTACTAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA


Promoter Sequence:
>Vu_02802::LG1:40905008-40907008(-)
ATTTATAAGTGACATTCTTTTACTCAATATAACAATATAACTGATACACATCATTAATATATTTTCCTTTTGAAGTTAAAAATTCTCTTCGTTTATCTTTTTCTCAAAATTTTAACTAATGCAAATATCATTGGAACATGATCGACTTAATTCAGGTTCCTTGACCTTTAGAGTAGGTGTGCTTCCATATATGGATTATTTGAGTAGATGTGTGAAAATATATTTTTTATTCGCTTTGCGTTTATTTTTGTGTATGTGAGGAAATTTGAAAGCATTGATTTATGGGAGAGAGAGTGGGAGTGATTCAGATAGATTGCATAGATTTATTGAAGGTGGACTATGAATACCAAAATATATTTGCTTTATTTAGAACATTCAAACTTGGTAACCAATTTTCTAGGAGATAGGTCCCAAGTTTTCATGGTATATGGTGGTTCATATACCCGAATATAAATTATCTACCTAATCATATAAAATATCAATTTTGAGGTGATTGGAGAATATAAAGATAGAACAGAATCTTTAGACTTATAAATGAAATAAATGGAATATAAGTATATGCGAAAGTTTTGATTTAATTAATAGATTTTATAATTGGTAAATATTTTAATAAAAGATAAAAAAAATTATATTTCAATATTATCTTAGAAATATATGATTTGTAAATGAAACATTTATAAATAAAAATATAAATCCAAAATTTAGAGAATTTTAAAAATATGGTTAACTTTTGAGTGATTCTCCTTTTATCTTATCACATCTTGCATCTCCTTATTCTTTTATAATTTTAACTGTGTCCCTGTCAGAACTTTACTTTCGTATTGCATACACCCCTTTCTTCTCTCTTCTGGCATGGAGTGCTCCTCCCATCTCCCCTCCTTCCTCACTCGTTGTCATTTGTTGGATGAGATGAAAGTCGATGTTGTAACTGCACAAGTTGGAAAAGGAGGTGCAAAGCTCTCCGAAAAAAGGATTGTAGAGTTCTCCGCACTTAGAAGTGTGGTTGAGGAACAGTTTGAAATGCAATCTAATTGTGGTTGGAAATGCGGTTCATATAACATCGTAATTGGAAATGCGGTTTCACACTTTGCCGCACCTTGAACTACGGTCAAGCTTTTCCTACTTTTTCATTGCTTTATTATTGTTTTCTGAATTTGGAAGACTGAAGCATTAGACCGCATCAGGGTGTGTCTTTCTTCCGTAAGTTTATTCTCAAAGCTGCTAGGATGAGATCTTCTTAGAAAAAGATCTAATTGAGGAGAAATGTCAACCTTGCCTGAGCAATCAACTATAAAAAGCATAAAATAACATAAAATTATTTATTAACTAAAAAACAACATACAACTAAAACACCTAAATAAAAGCATACAACTAAAACATCATACAACTAAAACAACATAAAATTAAATTTAAAAACAGCATATAACATATTATATAAATAGAAACATCTTATAAATTAAATTAAAAGTTAAAATAATTAACACTTAAAAAATGTATATAATAAATACAAAATAACAAAAATAATTTAATAACAAAAAATTAACAAATAAAATAAGATTGAAAGTAATGCACAAGCTTAAGAGTGAAGAAATGAGATGAGTGCATCCTAGAGTTACATTACAATAGTATATAAATAAAGATTGTTGGTATTTAAAAAATCATTAAATCATCATTACACTTTTTAGATTTTATTAAATGAAGGATATAAATGTGAGAATCGAAACAAATGAGATGTACGGAGCAACACTCTTAATTTTTTTATATATTCCAAGTTCTTAGTACTTTTCTTCCATAACTGTCATGTGTATGTAGCACACGTGTCACATAATAATTGGTCCAACAATAAAACGTGGCGATTGGCTGTCGAATTCTGAGGAACTAACTACTAATATAATCATTCACGTATCATTTAAACATTTTTACTCTGTCTCGCATTTTACTAATAATAATAACCAATCAATACGTTTTATATCTAAGAAAACAAATTCATAGATTTAATT


Gene Sequence:
>Vu_02802(-)
GAAGGCTTAAAACCTTATCATAGCAGAAAAGGTAGGAGAGACAGGCATCGAGTAGTGTTAGTGAGAGTGTGTGCGATGGAGATGGATCCCCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCGGGGGCTTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGATGGCCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAATCTGCTTTCCGAGAAATCGACGCGTTGCAACTCCTCCAGGGATTCCCAAACATCGTCGTTATGCACGAATACTTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGACAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGGTGGATGATCCAGATTCTCTCTGGCGTCGACGCCTGTCATCGCAACATGGTCCTCCACCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAATGGCCTCCTCAAGATCGCCGATTTCGGACAGGTAATCTCTTCTCATTGTCGACAACCACAAAACCCTAACCCCGACTTTTCAAATGTCTGAGCGCTTGATTGATCGGGTGTTTGCAAAACTGACTTTTAGTTCAAATTGTTTTTGAAGTTATGTGATTACTTTTCAATGCTTTTGTTTTAAAATCAAGTCAGTAGGTTAATAAAAACACAAATGTGAAGATGTTTTAACTCAAAATCAACACCAAAAACTCAGTGTATGTTTAGTCACACGTTCGATTATCCAGAAGTAATCATTAATGTGTTCTTTTGTACACTTTTACATATCAAGTTTTAGCTTGAGCAGTTGATTCCTGAGTTAACGAAACTTAAATGGCTTCTGTATTAAATAATGAAAATTTACAGTGAGTTAGCTACTAATTTGTTTTAGAATAAATCATTTTTACTTCAATTTTCATCAAAACTAACTTCACATAAAATCAATTTCGTAACACTCACCCAAATACATACACACACTCAATTCCTCAAAATTGAAACCAAACACATGAACACTTATAAAATTTGGTTAACTAGCGTAGCAACGAAATTCTGGATGACTCAATGGGAATCCAATTACGTACTGAATTGATGGCTATTTTTTCAGGCAAGAATTCTTACGGAGCCTGGATTTGATGATTCTAATAAGCATGAAGAGTATTCTAGAGACATTGATAATGAGGATACTTGTACTAATACTCACGATGGAAATGCAACATGCACCACAAGTGACATAAACAGGGAAGATGAAGAGAACGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATTAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTAATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCTATTTCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTTGGCCCGCTCAATATTACTAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGAAGAATTCAAGGTACATCGTATCCTTGGAACCTGCCTTTACCTTTTGTGTGGTGCTGTTCAAATGGTAATTATTTGGTGAGAATATTTATGAGAAATATTTTTCGGATTTGATGTGAACAGAGAGATAAACTATTGAAAAAAACTTGATGGACTGTGTTAACATGAATTCATAGTTGACCATGACACTCATAGTTGTTGTAATAATGGACTTGTATCTTGTCATATTTACAGATAGAACGTATTAGTAACTAGTTATTTCTTGTGTTTATTCCGGTCATGTCATGACCTGGTAAACAACTTACAGCAAGAGGATTTATATCTATAGAACAACACCATAAACATAGACTATACATGAGTGGAACTGGCAGGTTCTGCATTCCAGCTATATGAGCATGCCTCTTTGTG