Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03075 LG1 43483659 43486875 PREDICTED: transcription factor EGL1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   jasmonic acid mediated signaling pathway, trichome branching, positive regulation of anthocyanin biosynthetic process, positive regulation of anthocyanin biosynthetic process, trichome differentiation, epidermal cell fate specification, cell fate specification, trichome branching, epidermal cell fate specification, cell fate specification, jasmonic acid mediated signaling pathway, jasmonic acid mediated signaling pathway, epidermal cell fate specification, jasmonic acid mediated signaling pathway, trichome differentiation, trichome branching
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein dimerization activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/G 43484297 splice_region_variant&intron_variant
A/C 43484306 intron_variant
T/C 43484308 intron_variant
A/T 43484314 intron_variant
T/C 43484317 intron_variant
A/T 43484320 intron_variant
G/A 43484357 intron_variant
T/A 43484439 stop_gained p.Arg433*
G/A 43484547 missense_variant p.Pro397Ser
G/T 43484695 synonymous_variant p.Thr347Thr
G/A 43484706 missense_variant p.Leu344Phe
A/T 43484733 missense_variant p.Trp335Arg
A/T 43484737 missense_variant p.Asp333Glu
C/A 43484739 missense_variant p.Asp333Tyr
A/T 43484740 synonymous_variant p.Gly332Gly
G/A 43484745 stop_gained p.Arg331*
G/T 43484748 missense_variant p.Pro330Thr
C/T 43484761 missense_variant p.Met325Ile
T/A 43484763 missense_variant p.Met325Leu
G/A 43484776 synonymous_variant p.Cys320Cys
T/A 43484780 missense_variant p.Lys319Met
A/G 43484818 synonymous_variant p.Cys306Cys
G/T 43484825 missense_variant p.Pro304His
T/C 43484840 missense_variant p.Asn299Ser
A/T 43484905 missense_variant p.Ser277Arg
C/T 43485129 missense_variant p.Ala203Thr
G/A 43485319 missense_variant p.Thr171Ile
T/A 43485320 missense_variant p.Thr171Ser
A/G 43485373 splice_region_variant&intron_variant
T/C 43485377 intron_variant
C/G 43485533 intron_variant
C/G 43485679 intron_variant
A/T 43485740 intron_variant
C/A 43486070 intron_variant
G/C 43486311 missense_variant p.Ser72Arg
G/C 43486434 splice_region_variant&intron_variant
G/T 43486508 intron_variant
C/T 43486698 intron_variant
G/T 43486705 intron_variant
T/C 43486788 missense_variant p.Thr30Ala
T/A 43486853 missense_variant p.Lys8Ile
T/A 43486860 missense_variant p.Met6Leu
C/T 43486866 missense_variant p.Glu4Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03075.1
MVPENMKKQLALSVRSIQWSYAILWTDSTTQPGVLRWGEGYYNGDIKTRKTSQGVELNSDQIGLQRSEQLRELFKSLKTTEITPQSKRPSAALSPEDLTDAEWYYLVCMSFVFNIGQGLPGRVLAKGQSIWLNNAHSADCKVFSRSLLAKSASIETVVCFPVMEGVIELGTTEHVSEDFSLIERIKTSFLNNFHVNDPIKSGTALKSRNQEDLAYVAFDNNVESIPEIGYEIASKTSPDGSSNAFQANQPLDETFMVERITSGTSQVQSWQVMDDEISNCVHNSMNSSDCISQTFASPENIPSSPKCNNPSDPFARDIQKCNNPKMTLVDPRGDDWHYQRVLSDLLKTSDQLLMKMHSQKFHQESSFVCWRPERATDCQWPRSGTSQKLLKKVLFEVPQMHMDGLHESQEENDYKEGMRLETDEIGMNHVMSERRRRAKLNERFLTLRSMVPSISKDDKVSILDDAIEYLKKLERRIKELEVQRGIANMEPGTRRSPQDMVERTSDHYFSKNNNGKKSVVKKRKVCGVDETGKEINSDALKGSYANDITVRTSDNEIVIEMKCPARAGKLLEIMEAVNSLSIDFNSVQSTEADGNLYLTIKSVLTGATIATTKRIKQALQKVASKF*


CDS Sequence:
>Vu_03075.1
ATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGTCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCAGGGGTATTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCACCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGTTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAAGTTTTTAGTCGTTCTCTGCTCGCAAAGAGTGCATCCATCGAGACGGTCGTGTGTTTTCCGGTTATGGAAGGAGTTATCGAGCTAGGTACCACTGAACATGTCTCAGAAGATTTCAGTCTAATCGAGCGGATCAAGACTTCTTTCTTGAATAATTTTCATGTCAACGATCCTATTAAGTCAGGAACTGCATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTACGAAATAGCCAGCAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATCTCACAAACTTTTGCCAGTCCTGAGAATATTCCTTCTTCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTAGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTATCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTTTGTTGGAGGCCAGAAAGGGCAACGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACATGGATGGTCTGCATGAATCTCAAGAAGAAAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGTTCAAAGAGGGATAGCAAATATGGAGCCGGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAACAACAACGGAAAGAAATCAGTTGTAAAAAAGAGAAAGGTCTGTGGCGTGGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCGCAAGAGCAGGAAAGCTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGCTCACAGGAGCAACTATTGCAACAACCAAAAGAATCAAACAAGCACTTCAAAAAGTGGCTTCGAAGTTCTGA


Promoter Sequence:
>Vu_03075::LG1:43486875-43488875(-)
TTTGTTTCCATTTCTTTATTTAAATTCTAAATTACTAAATATCAACTAAATACGTTCATGAAAATAATATTCCTACATAATATATTTTTAAGAATAAGATAATTTTGATAATTTGTTTATAAATATAAAAAAATTATCTCTAGATTTTAATTATGAATTTTCTTTATTATAGAATTCAAATTACTAACAAATTATATTTTTAAATATTTTTTTTTATGATTTAAAGAATTATTATCTGGTTAACTATTTTTATGCATATCTTTTACATTTTTCATTTGTTTTTTTATCATAATTTTTATTTTCAACTTTTTTGACATTAGGACTAAAATCCTTTTTATAATTAACATCAATGTTAAGAGAGATTATACTTGCTCTATCTTTTTATGACTATGTTATATGTAATTTTATTTATTAATGTTAATTTTTTCTTCTTATATATATCATTTAAAAAGATTTATATATTTTAATTGATACGATCTTTAGGTTTGTAATCAATTGTTTTGGGTTTAAATTAAGTTTGTAATATATTATCACGTGTGTTTCTACGAGGAACTGGGTTAATTTTTAAACAAAAATTATACACGATAGTTAAAATCAAAATCATGTTATAAAAATTATATACGAGGAACTGGACTCAAATTACATTTATAAGAAATGTTGATAATCAAGGATTTGATTTTGGGAGTTTATAAGAAATATTTTGGATTTCTGAAAGCCTAAAAAAAAGATTTGCTTAAAAACACACTTCAATCCAAGTAATAGAAGTTATTAATCACATTTATAGAATAAATTGATTGCTAGATGTGTGTGCAACGTGTGATATGCAAATTATGTGTATGGATTTGAGATATACGTAATTACATATACAAATTATGTTTCGAATCTGTTCTAAACAATCCTAGAATCGATTCTATCATCACCCACAATATATCCTTCTTCTTGTAAATAGGGAAGAACCGATTCGGTTTCCACCAGAATTGACTCCTAACATCAAATCTGCAACGTACAAATGAACAAATAATTAGGATAATTATTTTACCCAATTAACATAAAAATCAATAAATACAAATTCAATTTAGAAATATAAACATTTTGAATAATAAATTGATAAAAAGTCGGCCGAAAATAATCCAAATTTATAAGACAGTTAAAACATAATTAAACTTATATAAAACAATGAACGTGGGATTGTCTTAATTAAAAATTCAGTCATATCATAACATAAAGTCTGAGTTTCTTGTGCACATTTTTGTGTGCATAATAATAGCAACACTGCCATGGTCACTCTCTCTTTCTCGAGTCAACATCTGCAACACCGCACTTTTTGAGGCACAGTACTACCATCTACCTATCTTGTGGCACTCCAACAAACCCTACTTGCGGACTACATGTTTGGTGTCTTTGACTTCAATTATCTATTTCTCTTGGTTGTTGGTATGTATTTGTAATTTGGCTCTTTATAAGTGCTTAGATCCTAATAATTAGTGTTCTTTCTACAAAATCAGACTTAAAAAAAGCTATTTATGGATTGAATATAGTGCAAATCTATTTATCGTTTAAATCGGATAGCACAGTGAAATCTTTATCAGAAAAATGATTACCATTGACGGGAATGTAGGGACAACATTAGCAGTCCCATGTTAAAATCAATTACTTGTGGTGTTGTTTAAACCCTCAGAATTTCCTACCCAATGTACTGTGGATTTGCTCTTCTCTCATATTCAACTCCCATCATACACCCTGCTTGTTTTGTTTTTAATAGTTGAATATTATGACAAGGTTTTCTAGTCAGGGAACAAGGGTCATGGCAAGGAAGTAAATAAATCAAGAGATAGATAGATAGATAGATAGAGAGAGAGAGAGGTAGACAAGTCTAACAAACAAACTTCTCTTTCTTTAGCCATCTTATCACATAATACTGCAGATTTTTTGTGTGGTGTTCGTTCAGTAATTTTAATCTGTATGAGACAAGTTGTGTCTACTCTGCAAAGCCAGAAAAC


Gene Sequence:
>Vu_03075(-)
ATGGTGCCAGAGAACATGAAGAAACAACTTGCTTTGTCTGTGAGAAGCATCCAATGGAGCTATGCAATTCTCTGGACTGATTCAACCACCCAACCAGGGTACCAACCAACTATTCTATTCATATTTGCCTACTCTGTTCTATTTTCAATTGTTTGACTTTGATCTTTCTCCTTCTTCGATATTTTGCTTTCTCCAATACATACAAAATTTGCCATGATTGAGCCTCAGGATAGGATGCATCTTTTTCCTGTGTAGTTTGGGTTATGTTAATACAAGATAATAAGTAAATAAACAAACAATTGTAACCTGTCCATGTTTTCTCATCTATGGTGTATGGTTGACTAAATGGCAATTTGAAATTCTGAATCTACTGTTTGCATTTTCTTGTATTATTGCTTGTGAGGCATTTGGTTTGGGGGTGGTATTCAATTTTTTGTTTCTCACAGGGTATTGAGATGGGGGGAAGGGTATTACAATGGAGACATTAAGACAAGGAAAACAAGTCAAGGGGTGGAACTTAATTCTGACCAAATAGGGTTGCAGAGGAGTGAGCAGCTGCGAGAGCTATTCAAATCCCTCAAAACTACAGAAATCACCCCACAAAGCAAACGGCCTTCGGCAGCACTGTCCCCAGAAGATCTCACAGATGCTGAGTGGTATTACTTGGTTTGCATGTCCTTCGTATTCAACATTGGCCAAGGGTAAATAGTAAATCTCCCCTATTTTTCTTTCTTTCAAGATTTGGATCATCAAGATATGTTCCCAAAATCGGGTGTTTTACTGATTTATAATCTCAAGGGTTAGTGAATCTTAGTTATTCAAATCTTCGTGTTCTGGTAGGTTACCAGGAAGAGTTCTGGCAAAGGGTCAATCCATTTGGCTCAACAATGCGCATTCCGCTGACTGTAAAGTTTTTAGTCGTTCTCTGCTCGCAAAGGTGGATTCATTTTCTTGATTTCACTCGTTCTGTCATTCTTCTGCTTTTGGTTAAATCTTGAATTCTTGCACTCTGGCTGTCTACCATGCTTGAAATGACAGATGATCTGAATTTTCTTCTTTGTTTGGTTTTTGTTCCATGAATAAACCTGTGGCAATTCTCTCATGCTCAGAGTGCATCCATCGAGGTACTATCTTGTTTTTTATTTACTTAATCGTCCTTGTTTTTATAATCTTTTATGTGTAATTTTCAGTTAGTTGAGTGCCATCAAATATGATGTAGAGAAATTTAGATTTGTTAGAACTCAGAATAGATTTTCCTTTTGAAACCACTCTACAGTGTTTGATCCAGGCACTGCTGCAACGGTATCTATCTGTTATAGTTTCAAAGCATAGAAGTAAACCTGTAGTTTACTCTCTAAAATTGTTACTTGTTCCATGCACGTAGTTTTCTTCAACACAAGTAACTAGGATTCCAAATATAAGACTTTGAAACTAATTTGTGCCAAATTTAGTAGGCAAAGACTAATCAATGCACTGTGTAATTTGTTTCCTTAATCTCAACTTTCAGACGGTCGTGTGTTTTCCGGTTATGGAAGGAGTTATCGAGCTAGGTACCACTGAACATGTAAGTTTTTTCACCTTCATCTATCATTAACTAATATTACTGTTTTGTTATTCACCAAAATAATCATGTTACTGAAACTTGTTCTTCGTGTGAAGGTCTCAGAAGATTTCAGTCTAATCGAGCGGATCAAGACTTCTTTCTTGAATAATTTTCATGTCAACGATCCTATTAAGTCAGGAACTGCATTGAAATCAAGGAACCAGGAAGATCTTGCTTATGTAGCATTTGATAATAATGTTGAATCAATTCCAGAAATTGGGTACGAAATAGCCAGCAAAACCTCTCCTGATGGTAGTTCAAATGCATTCCAAGCCAATCAACCACTGGATGAAACTTTCATGGTTGAAAGGATAACCAGTGGCACTTCTCAAGTCCAAAGCTGGCAAGTTATGGATGATGAGATAAGTAACTGTGTCCATAACTCCATGAATTCCAGCGACTGTATCTCACAAACTTTTGCCAGTCCTGAGAATATTCCTTCTTCACCCAAGTGTAACAACCCTTCTGACCCTTTTGCCCGAGATATTCAAAAGTGCAACAACCCAAAAATGACGCTAGTAGATCCTCGAGGTGATGATTGGCATTATCAGAGAGTTCTATCTGACCTTTTAAAAACCTCTGATCAGTTACTCATGAAAATGCATTCACAAAAGTTTCATCAGGAATCAAGCTTTGTTTGTTGGAGGCCAGAAAGGGCAACGGATTGCCAATGGCCAAGATCAGGAACTTCACAGAAGTTATTGAAGAAGGTATTGTTTGAAGTTCCTCAAATGCACATGGATGGTCTGCATGAATCTCAAGAAGAAAATGACTATAAGGAGGGAATGAGACTAGAGACTGATGAAATTGGCATGAACCACGTAATGTCAGAAAGAAGGAGAAGAGCAAAACTAAATGAAAGGTTTTTAACCCTTAGGTCAATGGTCCCTTCAATCAGTAAGGTAATGTATATTTCACTGGTGCATTTATTTGCTTGATTGTCACTTATTGCTGAAATTAATGAAGTGTACAATTTTTTCAGGATGACAAAGTTTCAATACTTGATGATGCAATTGAATACCTTAAAAAGCTTGAGAGAAGGATAAAAGAGTTGGAAGTTCAAAGAGGGATAGCAAATATGGAGCCGGGGACTAGAAGATCACCTCAAGATATGGTAGAAAGGACTTCTGATCATTATTTTAGCAAAAACAACAACGGAAAGAAATCAGTTGTAAAAAAGAGAAAGGTCTGTGGCGTGGATGAGACAGGAAAAGAGATTAATTCAGATGCTTTAAAAGGAAGTTATGCTAATGATATTACTGTGAGAACTAGTGACAATGAAATTGTGATCGAAATGAAGTGCCCCGCAAGAGCAGGAAAGCTACTAGAAATTATGGAAGCAGTTAATAGTCTCAGTATAGATTTTAATTCGGTTCAGTCAACAGAGGCTGATGGAAATCTTTATCTGACCATTAAATCTGTGGTGAGCACTTCTGGTTTTATACTATTATGCATTCAGGAGAGCATAACTAGCTACGAAATGATCTTTTCTTATGCACCTAAATTGCCTTTTTCTAAAATTGGTCATCCTTCTATTTTCAGCTCACAGGAGCAACTATTGCAACAACCAAAAGAATCAAACAAGCACTTCAAAAAGTGGCTTCGAAGTTCTGA